Rh6CG514100

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013620
Physical Location & Seq
Reverse (-)
67224536 .. 67226326
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG514100.1

Sequence Viewer

Length: 846 bp
ATGAGGAGTACTCCAACATATCTGAACCCACCATCCTTTCCTTTCTCCCTTGAAAATTTTGTAGCAGATCAAGCAGCACAGGATCAACGCCTAAAACTCTTCATCTCATCATCACTACCATATGGCGGTGCTTCTTGTTCTCTCTCATTTCCTGCTTTCTTTGACTCCCTTACTGATCAGTCGGGGATCTCTAGTACGAGTATTACTGTTGGAGATCAAGCCCTACTATATAAGGGGCAAAGGGCGAATAAGAGCATATGGCAAGGTGAAACAAGTTATGATCAAGTATGCTCATCATCTTCTTTAGTTCATCCTGTGTCCGATGTTAGCAACGAGGAGTGCCGTAAGTTATCTGTATCCACTGATCAAATAATTGAGAATAATGAAGACCATGAGAGTAACACTAATAGGCCAGTAAAGTGGACACCCTTGACGATGAAGTTGATGCAAAAGATGACCCATGAACCGGATCAAGTGCCTGAAAAAATTCCCCTTACTTATAAGTTCCAAAGTGCTCGTCTTGATGATCAGCATCGAGAAACTAATACTGGCGAAACCAGCAGCAGCAGCAGCTTAACAATTTCCAATAACAAGAGTAGTAGCAGTATAGTGTCTGCCGTTAGGGTTTGTTCGGATTGCAGCACCAACACAACCCCACTTTGGAGGAGTGGTCATCGAGGTCCCAAGTCACTATGCAATGCGTGTGGAATTCGACAGAGGAAAGCGAGAAGATCCATGGCTGAAGCTGCTGCTGCTGCAACCGGATTGGCAGGTGGCACCACCGGCCCGGCCGCTACTACAGCTGCTACTACCGCCAAATCATCATCTATATATGAGATCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001101 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010114 GO:0010151 GO:0010167 GO:0010187 GO:0010380 GO:0010467 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043610 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090056 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902326 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

281

Amino Acids

30.37

Weight (kDa)

6.95

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 210 - 244 4.2e-14 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31930
malus_domestica MD08G1061600.v1.1 MD15G1060100.v1.1
prunus_persica Prupe.1G412000_v2.0.a1
pyrus_communis pycom08g05110 pycom15g05640
rosa_chinensis RchiOBHm_Chr6g0310911
rosa_laevigata RLG00000010451
rosa_multiflora Rmu_co8401939.1_g000001
rosa_roxburghii Rroxscaffold_7G00158190
rosa_rugosa Rorug06G0383900
rosa_samantha Rh6AG497800 Rh6BG507900 Rh6BG508000 Rh6CG514000 Rh6CG514100 Rh6DG500500
rosa_wichuraiana Rw6G043360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 501
AarI CACCTGC 1 cut(s) 761
Acc36I ACCTGC 1 cut(s) 761
AccB1I GGYRCC 1 cut(s) 776
AciI CCGC 3 cut(s) 126, 792, 813
AclWI GGATC 4 cut(s) 90, 194, 477, 726
AcoI YGGCCR 1 cut(s) 789
AcsI RAATTY 3 cut(s) 55, 486, 708
AcuI CTGAAG 1 cut(s) 762
AfaI GTAC 2 cut(s) 10, 196
AfiI CCNNNNNNNGG 3 cut(s) 125, 466, 660
AgsI TTSAA 1 cut(s) 53
AloI GAACNNNNNNTCC 2 cut(s) 17, 49
AluBI AGCT 3 cut(s) 573, 746, 803
AluI AGCT 3 cut(s) 573, 746, 803
Alw21I GWGCWC 1 cut(s) 517
AlwI GGATC 4 cut(s) 90, 194, 477, 726
AoxI GGCC 3 cut(s) 410, 784, 789
ApoI RAATTY 3 cut(s) 55, 486, 708
ArsI GACNNNNNNTTYG 2 cut(s) 502, 534
Asp700I GAANNNNTTC 1 cut(s) 486
AspS9I GGNCC 2 cut(s) 680, 785
AsuC2I CCSGG 1 cut(s) 788
AsuHPI GGTGA 1 cut(s) 278
AvaII GGWCC 1 cut(s) 680
BanI GGYRCC 1 cut(s) 776
BbsI GAAGAC 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 517
BccI CCATC 1 cut(s) 40
BceAI ACGGC 2 cut(s) 327, 602
BciVI GTATCC 1 cut(s) 367
BclI TGATCA 4 cut(s) 175, 280, 364, 526
BcnI CCSGG 1 cut(s) 788
BfaI CTAG 1 cut(s) 192
BfmI CTRYAG 1 cut(s) 798
BfuAI ACCTGC 1 cut(s) 761
BfuI GTATCC 1 cut(s) 367
BmcAI AGTACT 1 cut(s) 10
Bme1390I CCNGG 1 cut(s) 788
Bme18I GGWCC 1 cut(s) 680
BmgT120I GGNCC 2 cut(s) 680, 785
BmiI GGNNCC 2 cut(s) 682, 778
BmrFI CCNGG 1 cut(s) 788
BmsI GCATC 2 cut(s) 435, 541
BpiI GAAGAC 1 cut(s) 393
BplI GAGNNNNNCTC 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 788
BsaBI GATNNNNATC 1 cut(s) 531
BsaJI CCNNGG 1 cut(s) 735
BsaWI WCCGGW 2 cut(s) 466, 761
BsaXI ACNNNNNCTCC 2 cut(s) 655, 685
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 466, 660
Bse118I RCCGGY 1 cut(s) 782
Bse1I ACTGG 2 cut(s) 413, 553
Bse3DI GCAATG 1 cut(s) 703
Bse8I GATNNNNATC 1 cut(s) 531
BseDI CCNNGG 1 cut(s) 735
BseGI GGATG 2 cut(s) 32, 310
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 3 cut(s) 125, 466, 660
BseMI GCAATG 1 cut(s) 703
BseNI ACTGG 2 cut(s) 413, 553
BseRI GAGGAG 3 cut(s) 19, 350, 679
BseX3I CGGCCG 1 cut(s) 789
Bsh1285I CGRYCG 1 cut(s) 792
BshFI GGCC 3 cut(s) 412, 786, 791
BshNI GGYRCC 1 cut(s) 776
BsiEI CGRYCG 1 cut(s) 792
BsiHKAI GWGCWC 1 cut(s) 517
BsiSI CCGG 4 cut(s) 467, 762, 783, 788
BslFI GGGAC 1 cut(s) 666
BslI CCNNNNNNNGG 3 cut(s) 125, 466, 660
BsmFI GGGAC 1 cut(s) 666
BsnI GGCC 3 cut(s) 412, 786, 791
Bsp1286I GDGCHC 1 cut(s) 517
Bsp19I CCATGG 1 cut(s) 735
BspACI CCGC 3 cut(s) 126, 792, 813
BspANI GGCC 3 cut(s) 412, 786, 791
BspLI GGNNCC 2 cut(s) 682, 778
BspMI ACCTGC 1 cut(s) 761
BspPI GGATC 4 cut(s) 90, 194, 477, 726
BspT107I GGYRCC 1 cut(s) 776
BsrDI GCAATG 1 cut(s) 703
BsrFI RCCGGY 1 cut(s) 782
BsrI ACTGG 2 cut(s) 413, 553
BssAI RCCGGY 1 cut(s) 782
BssECI CCNNGG 1 cut(s) 735
BssT1I CCWWGG 1 cut(s) 735
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 104
BstDSI CCRYGG 1 cut(s) 735
BstF5I GGATG 2 cut(s) 32, 310
BstMCI CGRYCG 1 cut(s) 792
BstSCI CCNGG 1 cut(s) 786
BstSFI CTRYAG 1 cut(s) 798
BstV2I GAAGAC 1 cut(s) 393
BstX2I RGATCY 2 cut(s) 186, 731
BstXI CCANNNNNNTGG 1 cut(s) 420
BstYI RGATCY 2 cut(s) 186, 731
BstZI CGGCCG 1 cut(s) 789
BsuI GTATCC 1 cut(s) 367
BsuRI GGCC 3 cut(s) 412, 786, 791
BtgI CCRYGG 1 cut(s) 735
BtsCI GGATG 2 cut(s) 32, 310
BtsIMutI CAGTG 1 cut(s) 360
BveI ACCTGC 1 cut(s) 761
Cfr10I RCCGGY 1 cut(s) 782
Cfr13I GGNCC 2 cut(s) 680, 785
Csp6I GTAC 2 cut(s) 9, 195
CspCI CAANNNNNGTGG 2 cut(s) 685, 720
CviAII CATG 3 cut(s) 392, 461, 736
CviJI RGCY 8 cut(s) 221, 412, 573, 740, 746, 786, 791, 803
CviKI_1 RGCY 8 cut(s) 221, 412, 573, 740, 746, 786, 791, 803
CviQI GTAC 2 cut(s) 9, 195
EaeI YGGCCR 1 cut(s) 789
EagI CGGCCG 1 cut(s) 789
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
EclXI CGGCCG 1 cut(s) 789
Eco130I CCWWGG 1 cut(s) 735
Eco47I GGWCC 1 cut(s) 680
Eco52I CGGCCG 1 cut(s) 789
Eco57I CTGAAG 1 cut(s) 762
EcoO109I RGGNCCY 1 cut(s) 680
EcoRI GAATTC 1 cut(s) 708
EcoT14I CCWWGG 1 cut(s) 735
ErhI CCWWGG 1 cut(s) 735
FaeI CATG 3 cut(s) 395, 464, 739
FaqI GGGAC 1 cut(s) 666
FatI CATG 3 cut(s) 391, 460, 735
FauNDI CATATG 2 cut(s) 121, 257
FbaI TGATCA 4 cut(s) 175, 280, 364, 526
FokI GGATG 2 cut(s) 19, 297
FspBI CTAG 1 cut(s) 192
HaeIII GGCC 3 cut(s) 412, 786, 791
HapII CCGG 4 cut(s) 467, 762, 783, 788
Hin1II CATG 3 cut(s) 395, 464, 739
HinfI GANTC 1 cut(s) 164
HpaII CCGG 4 cut(s) 467, 762, 783, 788
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 423
Hpy188I TCNGA 3 cut(s) 24, 322, 634
Hpy188III TCNNGA 2 cut(s) 521, 536
Hpy8I GTNNAC 1 cut(s) 423
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 4 cut(s) 448, 639, 696, 758
Hsp92II CATG 3 cut(s) 395, 464, 739
Ksp22I TGATCA 4 cut(s) 175, 280, 364, 526
LweI GCATC 2 cut(s) 435, 541
MaeI CTAG 1 cut(s) 192
MaeIII GTNAC 2 cut(s) 398, 687
MboII GAAGA 4 cut(s) 91, 291, 398, 741
MflI RGATCY 2 cut(s) 186, 731
MhlI GDGCHC 1 cut(s) 517
MluCI AATT 5 cut(s) 55, 372, 486, 579, 708
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 2 cut(s) 38, 190
MnlI CCTC 4 cut(s) 328, 657, 671, 711
MroXI GAANNNNTTC 1 cut(s) 486
MseI TTAA 1 cut(s) 575
MspA1I CMGCKG 1 cut(s) 803
MspI CCGG 4 cut(s) 467, 762, 783, 788
MspR9I CCNGG 1 cut(s) 788
NciI CCSGG 1 cut(s) 788
NcoI CCATGG 1 cut(s) 735
NdeI CATATG 2 cut(s) 121, 257
NlaIII CATG 3 cut(s) 395, 464, 739
NlaIV GGNNCC 2 cut(s) 682, 778
NmuCI GTSAC 1 cut(s) 687
PaqCI CACCTGC 1 cut(s) 761
PdmI GAANNNNTTC 1 cut(s) 486
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PpuMI RGGWCCY 1 cut(s) 680
PsiI TTATAA 1 cut(s) 501
Psp5II RGGWCCY 1 cut(s) 680
PspN4I GGNNCC 2 cut(s) 682, 778
PspPI GGNCC 2 cut(s) 680, 785
PspPPI RGGWCCY 1 cut(s) 680
PsuI RGATCY 2 cut(s) 186, 731
PvuII CAGCTG 1 cut(s) 803
RsaI GTAC 2 cut(s) 10, 196
RsaNI GTAC 2 cut(s) 9, 195
SaqAI TTAA 1 cut(s) 575
Sau96I GGNCC 2 cut(s) 680, 785
ScaI AGTACT 1 cut(s) 10
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 788
SduI GDGCHC 1 cut(s) 517
SetI ASST 6 cut(s) 268, 575, 682, 748, 775, 805
SfaNI GCATC 2 cut(s) 435, 541
SfcI CTRYAG 1 cut(s) 798
SinI GGWCC 1 cut(s) 680
Sse9I AATT 5 cut(s) 55, 372, 486, 579, 708
SsiI CCGC 3 cut(s) 126, 792, 813
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 786
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 1 cut(s) 208
TaqI TCGA 4 cut(s) 535, 676, 712, 840
TasI AATT 5 cut(s) 55, 372, 486, 579, 708
TatI WGTACW 1 cut(s) 8
TauI GCSGC 1 cut(s) 794
Tru1I TTAA 1 cut(s) 575
Tru9I TTAA 1 cut(s) 575
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 1 cut(s) 687
Tsp45I GTSAC 1 cut(s) 687
TspDTI ATGAA 5 cut(s) 91, 299, 399, 452, 477
TspRI CASTG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 680
XapI RAATTY 3 cut(s) 55, 486, 708
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 1 cut(s) 192
ZrmI AGTACT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.