RLG00000010451

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013620
Physical Location & Seq
Forward (+)
1724590 .. 1726224
1635 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010451

Sequence Viewer

Length: 1098 bp
ATGAGGAGTACTCCAACATATCTGAACCCACCATCCTTTCCTTTCTCCCTTGAAAATTTTGTAGCAGATCAAGCAGCACAGGATCAACGCCTAAAACTCTTCATCTCATCATCACTACCATATGGCGGTGCTTCTTGTTCTCTCTCATTTCCTGCTTTCTTTGACTCCCTTACTGATCAGTCGGGGATCTCTAGTACGAGTATTACTGTTGGAGATCAAGCCCTACTATATAAGGGGCAAAGGGCAAATAAGAGCATATGGCAAGGTGAAACAAGTTATGATCAAGTATGCTCATCCTCTTCTTTAGTTCATCCTGTGTCCGATGTTAGCAACGAGGAGTACCGTAAGTTTTCTGTATCCACTGATCAAATAATTGAGAATAATGAAGACCATGAGAGTAACACTAATAGGCCAGTAAAGTGGACACCCTTGACGATGAAGTTGATGCAAAAGATGACCCATGAACCGGATCAAGTGCCTGAAAAAATTCCCCTTACTTATAAGTTCCAAAGTGCTCGTCGTGATGATCAGCATCGAGAAACTAATACTGGCGAAACCAGCAGCTGCAGCAGCAGCAGCTTAACAATTTCCATTAGCAGGAGTAGTAGCAGTATAGTGTCTGCCGTTAGGGTTTGTTCGGATTGCAGCACCAACACAACCCCACTTTGGAGGAGTGGTCCTCGAGGTCCCAAGTCACTATGCAATGCGTGTGGAATTCGACAGAGGAAAGCGAGAAGATCCATGGCTGAAGCTGCTGCTGCTGCAACTGGATTGGCAGGTGGCACCACCGGCCCGGCCGCTACTTCAGCTGCTACTACCGCCAAATCATCATCTATGAGTAAGGGTAAGGGGAAAAAGTCACGACAAAACCACTATGTCACAGTGAGTTGCAAGAAGAAAAGAAACCTCATCATGACCGACGACAATACTAGTACTGCAGCACCTAGCATATATTACAAGAGAAATGATAAACAGCTCTGTAATTTCAAGCAGGTAGCTGCTTATTCTCCACCATCAGCACTATTTCCTCGAGATGTTGAAGAAGCTGCTATCCTGCTAATGGACCTATCTTCTGGCCTAAGTATGAACCACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001101 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010114 GO:0010151 GO:0010167 GO:0010187 GO:0010380 GO:0010467 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043610 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090056 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902326 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

366

Amino Acids

39.7

Weight (kDa)

9.13

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 212 - 246 2.6e-15 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31930
malus_domestica MD08G1061600.v1.1 MD15G1060100.v1.1
prunus_persica Prupe.1G412000_v2.0.a1
pyrus_communis pycom08g05110 pycom15g05640
rosa_chinensis RchiOBHm_Chr6g0310911
rosa_laevigata RLG00000010451
rosa_multiflora Rmu_co8401939.1_g000001
rosa_roxburghii Rroxscaffold_7G00158190
rosa_rugosa Rorug06G0383900
rosa_samantha Rh6AG497800 Rh6BG507900 Rh6BG508000 Rh6CG514000 Rh6CG514100 Rh6DG500500
rosa_wichuraiana Rw6G043360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 501
AarI CACCTGC 1 cut(s) 767
AbsI CCTCGAGG 1 cut(s) 681
Acc36I ACCTGC 2 cut(s) 767, 982
AccB1I GGYRCC 1 cut(s) 782
AciI CCGC 3 cut(s) 126, 798, 819
AclWI GGATC 4 cut(s) 90, 194, 477, 732
AcoI YGGCCR 1 cut(s) 795
AcsI RAATTY 3 cut(s) 55, 486, 714
AcuI CTGAAG 2 cut(s) 768, 789
AfaI GTAC 4 cut(s) 10, 196, 341, 934
AfiI CCNNNNNNNGG 5 cut(s) 125, 466, 597, 666, 1060
AgsI TTSAA 3 cut(s) 53, 988, 1040
AhlI ACTAGT 1 cut(s) 929
AloI GAACNNNNNNTCC 2 cut(s) 17, 49
AluBI AGCT 7 cut(s) 564, 579, 752, 809, 976, 998, 1046
AluI AGCT 7 cut(s) 564, 579, 752, 809, 976, 998, 1046
Alw21I GWGCWC 1 cut(s) 517
AlwI GGATC 4 cut(s) 90, 194, 477, 732
AlwNI CAGNNNCTG 1 cut(s) 564
Ama87I CYCGRG 2 cut(s) 681, 1029
AoxI GGCC 4 cut(s) 410, 790, 795, 1075
ApoI RAATTY 3 cut(s) 55, 486, 714
ArsI GACNNNNNNTTYG 2 cut(s) 502, 534
Asp700I GAANNNNTTC 1 cut(s) 486
AspS9I GGNCC 4 cut(s) 677, 686, 791, 1063
AsuC2I CCSGG 1 cut(s) 794
AsuHPI GGTGA 1 cut(s) 278
AvaI CYCGRG 2 cut(s) 681, 1029
AvaII GGWCC 3 cut(s) 677, 686, 1063
BanI GGYRCC 1 cut(s) 782
BbsI GAAGAC 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 517
BccI CCATC 2 cut(s) 40, 1021
BceAI ACGGC 1 cut(s) 608
BciVI GTATCC 1 cut(s) 367
BclI TGATCA 4 cut(s) 175, 280, 364, 526
BcnI CCSGG 1 cut(s) 794
BcuI ACTAGT 1 cut(s) 929
BfaI CTAG 3 cut(s) 192, 930, 945
BfmI CTRYAG 2 cut(s) 565, 936
BfuAI ACCTGC 2 cut(s) 767, 982
BfuI GTATCC 1 cut(s) 367
BmcAI AGTACT 2 cut(s) 10, 934
Bme1390I CCNGG 1 cut(s) 794
Bme18I GGWCC 3 cut(s) 677, 686, 1063
BmeT110I CYCGRG 2 cut(s) 681, 1029
BmgT120I GGNCC 4 cut(s) 677, 686, 791, 1063
BmiI GGNNCC 2 cut(s) 688, 784
BmrFI CCNGG 1 cut(s) 794
BmsI GCATC 2 cut(s) 435, 541
BpiI GAAGAC 1 cut(s) 393
BplI GAGNNNNNCTC 3 cut(s) 27, 664, 696
BpuMI CCSGG 1 cut(s) 794
BsaBI GATNNNNATC 1 cut(s) 531
BsaJI CCNNGG 1 cut(s) 741
BsaWI WCCGGW 1 cut(s) 466
BsaXI ACNNNNNCTCC 2 cut(s) 661, 691
Bsc4I CCNNNNNNNGG 5 cut(s) 125, 466, 597, 666, 1060
Bse118I RCCGGY 1 cut(s) 788
Bse1I ACTGG 3 cut(s) 413, 553, 772
Bse3DI GCAATG 1 cut(s) 709
Bse8I GATNNNNATC 1 cut(s) 531
BseDI CCNNGG 1 cut(s) 741
BseGI GGATG 3 cut(s) 32, 293, 310
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 5 cut(s) 125, 466, 597, 666, 1060
BseMI GCAATG 1 cut(s) 709
BseNI ACTGG 3 cut(s) 413, 553, 772
BseRI GAGGAG 3 cut(s) 19, 350, 685
BseX3I CGGCCG 1 cut(s) 795
Bsh1285I CGRYCG 1 cut(s) 798
BshFI GGCC 4 cut(s) 412, 792, 797, 1077
BshNI GGYRCC 1 cut(s) 782
BsiEI CGRYCG 1 cut(s) 798
BsiHKAI GWGCWC 1 cut(s) 517
BsiHKCI CYCGRG 2 cut(s) 681, 1029
BsiSI CCGG 3 cut(s) 467, 789, 794
BslFI GGGAC 1 cut(s) 672
BslI CCNNNNNNNGG 5 cut(s) 125, 466, 597, 666, 1060
BsmFI GGGAC 1 cut(s) 672
BsnI GGCC 4 cut(s) 412, 792, 797, 1077
BsoBI CYCGRG 2 cut(s) 681, 1029
Bsp1286I GDGCHC 1 cut(s) 517
Bsp19I CCATGG 1 cut(s) 741
BspACI CCGC 3 cut(s) 126, 798, 819
BspANI GGCC 4 cut(s) 412, 792, 797, 1077
BspHI TCATGA 1 cut(s) 912
BspLI GGNNCC 2 cut(s) 688, 784
BspMAI CTGCAG 2 cut(s) 569, 940
BspMI ACCTGC 2 cut(s) 767, 982
BspPI GGATC 4 cut(s) 90, 194, 477, 732
BspT107I GGYRCC 1 cut(s) 782
BsrDI GCAATG 1 cut(s) 709
BsrFI RCCGGY 1 cut(s) 788
BsrI ACTGG 3 cut(s) 413, 553, 772
BssAI RCCGGY 1 cut(s) 788
BssECI CCNNGG 1 cut(s) 741
BssT1I CCWWGG 1 cut(s) 741
Bst4CI ACNGT 3 cut(s) 208, 344, 883
Bst6I CTCTTC 2 cut(s) 104, 304
BstDEI CTNAG 1 cut(s) 1079
BstDSI CCRYGG 1 cut(s) 741
BstF5I GGATG 3 cut(s) 32, 293, 310
BstMCI CGRYCG 1 cut(s) 798
BstSCI CCNGG 1 cut(s) 792
BstSFI CTRYAG 2 cut(s) 565, 936
BstV2I GAAGAC 1 cut(s) 393
BstX2I RGATCY 2 cut(s) 186, 737
BstXI CCANNNNNNTGG 1 cut(s) 420
BstYI RGATCY 2 cut(s) 186, 737
BstZI CGGCCG 1 cut(s) 795
BsuI GTATCC 1 cut(s) 367
BsuRI GGCC 4 cut(s) 412, 792, 797, 1077
BtgI CCRYGG 1 cut(s) 741
BtsCI GGATG 3 cut(s) 32, 293, 310
BtsIMutI CAGTG 2 cut(s) 360, 888
BveI ACCTGC 2 cut(s) 767, 982
CaiI CAGNNNCTG 1 cut(s) 564
CciI TCATGA 1 cut(s) 912
Cfr10I RCCGGY 1 cut(s) 788
Cfr13I GGNCC 4 cut(s) 677, 686, 791, 1063
Csp6I GTAC 4 cut(s) 9, 195, 340, 933
CspCI CAANNNNNGTGG 2 cut(s) 691, 726
CviAII CATG 4 cut(s) 392, 461, 742, 913
CviQI GTAC 4 cut(s) 9, 195, 340, 933
DdeI CTNAG 1 cut(s) 1079
EaeI YGGCCR 1 cut(s) 795
EagI CGGCCG 1 cut(s) 795
Eam1104I CTCTTC 2 cut(s) 104, 304
EarI CTCTTC 2 cut(s) 104, 304
EclXI CGGCCG 1 cut(s) 795
Eco130I CCWWGG 1 cut(s) 741
Eco47I GGWCC 3 cut(s) 677, 686, 1063
Eco52I CGGCCG 1 cut(s) 795
Eco57I CTGAAG 2 cut(s) 768, 789
Eco88I CYCGRG 2 cut(s) 681, 1029
EcoO109I RGGNCCY 1 cut(s) 686
EcoRI GAATTC 1 cut(s) 714
EcoT14I CCWWGG 1 cut(s) 741
ErhI CCWWGG 1 cut(s) 741
FaeI CATG 4 cut(s) 395, 464, 745, 916
FaqI GGGAC 1 cut(s) 672
FatI CATG 4 cut(s) 391, 460, 741, 912
FauNDI CATATG 2 cut(s) 121, 257
FbaI TGATCA 4 cut(s) 175, 280, 364, 526
FokI GGATG 3 cut(s) 19, 280, 297
FspBI CTAG 3 cut(s) 192, 930, 945
HaeIII GGCC 4 cut(s) 412, 792, 797, 1077
HapII CCGG 3 cut(s) 467, 789, 794
Hin1II CATG 4 cut(s) 395, 464, 745, 916
HinfI GANTC 1 cut(s) 164
HpaII CCGG 3 cut(s) 467, 789, 794
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 423
Hpy188I TCNGA 3 cut(s) 24, 322, 640
Hpy188III TCNNGA 6 cut(s) 521, 536, 861, 913, 1031, 1095
Hpy8I GTNNAC 1 cut(s) 423
Hpy99I CGWCG 2 cut(s) 522, 923
HpyCH4III ACNGT 3 cut(s) 208, 344, 883
HpyCH4V TGCA 7 cut(s) 448, 567, 645, 702, 764, 891, 938
HpyF3I CTNAG 1 cut(s) 1079
Hsp92II CATG 4 cut(s) 395, 464, 745, 916
Ksp22I TGATCA 4 cut(s) 175, 280, 364, 526
LweI GCATC 2 cut(s) 435, 541
MaeI CTAG 3 cut(s) 192, 930, 945
MaeIII GTNAC 4 cut(s) 398, 693, 858, 877
MboII GAAGA 7 cut(s) 91, 291, 398, 747, 907, 1052, 1062
MflI RGATCY 2 cut(s) 186, 737
MhlI GDGCHC 1 cut(s) 517
MluCI AATT 6 cut(s) 55, 372, 486, 585, 714, 982
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 2 cut(s) 38, 190
MnlI CCTC 8 cut(s) 307, 328, 663, 677, 690, 717, 917, 1038
MroXI GAANNNNTTC 1 cut(s) 486
MseI TTAA 1 cut(s) 581
MspA1I CMGCKG 2 cut(s) 564, 809
MspI CCGG 3 cut(s) 467, 789, 794
MspR9I CCNGG 1 cut(s) 794
NciI CCSGG 1 cut(s) 794
NcoI CCATGG 1 cut(s) 741
NdeI CATATG 2 cut(s) 121, 257
NlaIII CATG 4 cut(s) 395, 464, 745, 916
NlaIV GGNNCC 2 cut(s) 688, 784
NmuCI GTSAC 3 cut(s) 693, 858, 877
PaeR7I CTCGAG 2 cut(s) 681, 1029
PagI TCATGA 1 cut(s) 912
PaqCI CACCTGC 1 cut(s) 767
PdmI GAANNNNTTC 1 cut(s) 486
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PpuMI RGGWCCY 1 cut(s) 686
PsiI TTATAA 1 cut(s) 501
Psp5II RGGWCCY 1 cut(s) 686
PspN4I GGNNCC 2 cut(s) 688, 784
PspPI GGNCC 4 cut(s) 677, 686, 791, 1063
PspPPI RGGWCCY 1 cut(s) 686
PspXI VCTCGAGB 1 cut(s) 681
PstI CTGCAG 2 cut(s) 569, 940
PstNI CAGNNNCTG 1 cut(s) 564
PsuI RGATCY 2 cut(s) 186, 737
PvuII CAGCTG 2 cut(s) 564, 809
RsaI GTAC 4 cut(s) 10, 196, 341, 934
RsaNI GTAC 4 cut(s) 9, 195, 340, 933
SaqAI TTAA 1 cut(s) 581
Sau96I GGNCC 4 cut(s) 677, 686, 791, 1063
ScaI AGTACT 2 cut(s) 10, 934
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 794
SduI GDGCHC 1 cut(s) 517
SfaNI GCATC 2 cut(s) 435, 541
SfcI CTRYAG 2 cut(s) 565, 936
Sfr274I CTCGAG 2 cut(s) 681, 1029
SinI GGWCC 3 cut(s) 677, 686, 1063
SlaI CTCGAG 2 cut(s) 681, 1029
SmlI CTYRAG 2 cut(s) 681, 1029
SmoI CTYRAG 2 cut(s) 681, 1029
SpeI ACTAGT 1 cut(s) 929
Sse9I AATT 6 cut(s) 55, 372, 486, 585, 714, 982
SsiI CCGC 3 cut(s) 126, 798, 819
SspMI CTAG 3 cut(s) 192, 930, 945
StyD4I CCNGG 1 cut(s) 792
StyI CCWWGG 1 cut(s) 741
TaaI ACNGT 3 cut(s) 208, 344, 883
TaqI TCGA 4 cut(s) 535, 682, 718, 1030
TaqII GACCGA 1 cut(s) 932
TasI AATT 6 cut(s) 55, 372, 486, 585, 714, 982
TatI WGTACW 2 cut(s) 8, 932
TauI GCSGC 1 cut(s) 800
Tru1I TTAA 1 cut(s) 581
Tru9I TTAA 1 cut(s) 581
TscAI CASTG 2 cut(s) 367, 888
TseFI GTSAC 3 cut(s) 693, 858, 877
Tsp45I GTSAC 3 cut(s) 693, 858, 877
TspDTI ATGAA 5 cut(s) 91, 299, 399, 452, 477
TspRI CASTG 2 cut(s) 367, 888
VpaK11BI GGWCC 3 cut(s) 677, 686, 1063
XapI RAATTY 3 cut(s) 55, 486, 714
XhoI CTCGAG 2 cut(s) 681, 1029
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 3 cut(s) 192, 930, 945
ZrmI AGTACT 2 cut(s) 10, 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.