Rmu_co8401939.1_g000001

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8401939.1
OG0013620
Physical Location & Seq
Reverse (-)
728 .. 1072
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8401939.1_g000001.1.cds

Sequence Viewer

Length: 345 bp
atggctgaagctgctgctgcaactggattggcaggtgggaccaccggcgcggccgctacttcagctgctactaccgccaaatcatcatctatgagtaaggggaaaaagtcacgacaaaaccactatgtcacagtgagttgcaagaagaaaagaaaactcatcatgaccgacgacagtacgagtactgcagcacctagcatatattacaagagaaatgataaacagctctgtaatttcaagcaggtagctgcttctccaccatcagcactatttcctcgagatgttgaagaagctgctatcctgctaatggacctatcttctggcctaagtatgaaccactcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001101 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010114 GO:0010151 GO:0010167 GO:0010187 GO:0010380 GO:0010467 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043610 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090056 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902326 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

114

Amino Acids

11.9

Weight (kDa)

9.65

Isoelectric Point (pI)

50.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31930
malus_domestica MD08G1061600.v1.1 MD15G1060100.v1.1
prunus_persica Prupe.1G412000_v2.0.a1
pyrus_communis pycom08g05110 pycom15g05640
rosa_chinensis RchiOBHm_Chr6g0310911
rosa_laevigata RLG00000010451
rosa_multiflora Rmu_co8401939.1_g000001
rosa_roxburghii Rroxscaffold_7G00158190
rosa_rugosa Rorug06G0383900
rosa_samantha Rh6AG497800 Rh6BG507900 Rh6BG508000 Rh6CG514000 Rh6CG514100 Rh6DG500500
rosa_wichuraiana Rw6G043360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 23
Acc36I ACCTGC 2 cut(s) 23, 232
AccII CGCG 1 cut(s) 50
AciI CCGC 3 cut(s) 50, 54, 75
AcoI YGGCCR 1 cut(s) 51
AcuI CTGAAG 2 cut(s) 27, 45
AfaI GTAC 2 cut(s) 178, 184
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 2 cut(s) 238, 287
AluBI AGCT 5 cut(s) 11, 65, 226, 248, 293
AluI AGCT 5 cut(s) 11, 65, 226, 248, 293
Ama87I CYCGRG 1 cut(s) 276
AoxI GGCC 2 cut(s) 51, 322
ApeKI GCWGC 7 cut(s) 11, 14, 17, 65, 188, 248, 293
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 39, 310
AvaI CYCGRG 1 cut(s) 276
AvaII GGWCC 2 cut(s) 39, 310
BbvI GCAGC 5 cut(s) 4, 52, 200, 235, 280
BccI CCATC 1 cut(s) 268
BfaI CTAG 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 186
BfuAI ACCTGC 2 cut(s) 23, 232
BisI GCNGC 9 cut(s) 12, 15, 18, 51, 54, 66, 189, 249, 294
BlsI GCNGC 9 cut(s) 13, 16, 19, 52, 55, 67, 190, 250, 295
BmcAI AGTACT 1 cut(s) 184
Bme18I GGWCC 2 cut(s) 39, 310
BmeT110I CYCGRG 1 cut(s) 276
BmgT120I GGNCC 2 cut(s) 39, 310
BmiI GGNNCC 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 28
BseLI CCNNNNNNNGG 1 cut(s) 307
BseNI ACTGG 1 cut(s) 28
BseX3I CGGCCG 1 cut(s) 51
BseXI GCAGC 5 cut(s) 4, 52, 200, 235, 280
Bsh1236I CGCG 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 2 cut(s) 53, 324
BsiEI CGRYCG 1 cut(s) 54
BsiHKCI CYCGRG 1 cut(s) 276
BsiSI CCGG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 52
BsnI GGCC 2 cut(s) 53, 324
BsoBI CYCGRG 1 cut(s) 276
BspACI CCGC 3 cut(s) 50, 54, 75
BspANI GGCC 2 cut(s) 53, 324
BspFNI CGCG 1 cut(s) 50
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 40
BspMAI CTGCAG 1 cut(s) 190
BspMI ACCTGC 2 cut(s) 23, 232
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 44
Bst4CI ACNGT 2 cut(s) 133, 176
BstDEI CTNAG 1 cut(s) 326
BstFNI CGCG 1 cut(s) 50
BstHHI GCGC 1 cut(s) 50
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 4 cut(s) 11, 17, 62, 74
BstSFI CTRYAG 1 cut(s) 186
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 5 cut(s) 4, 52, 200, 235, 280
BstZI CGGCCG 1 cut(s) 51
BsuRI GGCC 2 cut(s) 53, 324
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 2 cut(s) 23, 232
CciI TCATGA 1 cut(s) 162
CciNI GCGGCCGC 1 cut(s) 51
CfoI GCGC 1 cut(s) 50
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 39, 310
Csp6I GTAC 2 cut(s) 177, 183
CviAII CATG 1 cut(s) 163
CviJI RGCY 8 cut(s) 5, 11, 53, 65, 226, 248, 293, 324
CviKI_1 RGCY 8 cut(s) 5, 11, 53, 65, 226, 248, 293, 324
CviQI GTAC 2 cut(s) 177, 183
DdeI CTNAG 1 cut(s) 326
EaeI YGGCCR 1 cut(s) 51
EagI CGGCCG 1 cut(s) 51
EclXI CGGCCG 1 cut(s) 51
Eco47I GGWCC 2 cut(s) 39, 310
Eco52I CGGCCG 1 cut(s) 51
Eco57I CTGAAG 2 cut(s) 27, 45
Eco88I CYCGRG 1 cut(s) 276
FaeI CATG 1 cut(s) 166
FaiI YATR 6 cut(s) 92, 126, 164, 200, 202, 332
FaqI GGGAC 1 cut(s) 52
FatI CATG 1 cut(s) 162
Fnu4HI GCNGC 9 cut(s) 12, 15, 18, 51, 54, 66, 189, 249, 294
Fsp4HI GCNGC 9 cut(s) 12, 15, 18, 51, 54, 66, 189, 249, 294
FspBI CTAG 1 cut(s) 195
GlaI GCGC 1 cut(s) 49
GluI GCNGC 9 cut(s) 12, 15, 18, 51, 54, 66, 189, 249, 294
HaeIII GGCC 2 cut(s) 53, 324
HapII CCGG 1 cut(s) 45
HhaI GCGC 1 cut(s) 50
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HpaII CCGG 1 cut(s) 45
Hpy188III TCNNGA 4 cut(s) 111, 163, 278, 342
Hpy99I CGWCG 1 cut(s) 173
HpyCH4III ACNGT 2 cut(s) 133, 176
HpyCH4V TGCA 3 cut(s) 20, 141, 188
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 17, 62, 74
HpyF3I CTNAG 1 cut(s) 326
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 1 cut(s) 48
LpnPI CCDG 6 cut(s) 9, 18, 58, 227, 306, 314
Lsp1109I GCAGC 5 cut(s) 4, 52, 200, 235, 280
MaeI CTAG 1 cut(s) 195
MaeIII GTNAC 2 cut(s) 108, 127
MboII GAAGA 3 cut(s) 157, 299, 309
MluCI AATT 1 cut(s) 232
MnlI CCTC 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 1 cut(s) 45
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 4 cut(s) 11, 17, 62, 74
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 2 cut(s) 108, 127
NotI GCGGCCGC 1 cut(s) 51
PaeR7I CTCGAG 1 cut(s) 276
PagI TCATGA 1 cut(s) 162
PaqCI CACCTGC 1 cut(s) 23
PkrI GCNGC 9 cut(s) 13, 16, 19, 52, 55, 67, 190, 250, 295
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 2 cut(s) 39, 310
PstI CTGCAG 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 2 cut(s) 178, 184
RsaNI GTAC 2 cut(s) 177, 183
SatI GCNGC 9 cut(s) 12, 15, 18, 51, 54, 66, 189, 249, 294
Sau96I GGNCC 2 cut(s) 39, 310
ScaI AGTACT 1 cut(s) 184
SetI ASST 9 cut(s) 13, 37, 67, 196, 228, 246, 250, 295, 315
SfcI CTRYAG 1 cut(s) 186
Sfr274I CTCGAG 1 cut(s) 276
SgrAI CRCCGGYG 1 cut(s) 44
SinI GGWCC 2 cut(s) 39, 310
SlaI CTCGAG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 276
SmoI CTYRAG 1 cut(s) 276
Sse9I AATT 1 cut(s) 232
SsiI CCGC 3 cut(s) 50, 54, 75
SspMI CTAG 1 cut(s) 195
TaaI ACNGT 2 cut(s) 133, 176
TaqI TCGA 1 cut(s) 277
TaqII GACCGA 1 cut(s) 182
TasI AATT 1 cut(s) 232
TatI WGTACW 1 cut(s) 182
TauI GCSGC 2 cut(s) 53, 56
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 2 cut(s) 108, 127
TseI GCWGC 7 cut(s) 11, 14, 17, 65, 188, 248, 293
Tsp45I GTSAC 2 cut(s) 108, 127
TspRI CASTG 1 cut(s) 138
VpaK11BI GGWCC 2 cut(s) 39, 310
XhoI CTCGAG 1 cut(s) 276
XspI CTAG 1 cut(s) 195
ZrmI AGTACT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.