Prupe.1G412000_v2.0.a1

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013620
Physical Location & Seq
Forward (+)
35956602 .. 35958525
1924 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G412000.1

Sequence Viewer

Length: 1014 bp
ATGATGACACCAGTGTATCTGAACCCAGCATCCTCTCCTTTCTCCATGGTGGAGCAAGCAGAAGATCAACGCCTAAAGCTCTTTATATCACCACCCTATGATGAAGCTGCTTCATGTACGTCTTTCCCATTTCCTACTTTCTTCGACTCCTTGCAAGATCAAACACCTGGGACTACTTTTACTTCTCTTGCTCATCATCAATCACAACTATATCATCACAAGGATAAGAACATTTGGGATTGTGGAACAAGTTACGATCAAGCATCCCCATCATCTTCTTTAGTTCAAGCTCATGTGGTGGACGCCATAAGCGACAAGGACCGCAGATTGTCCAGATGTGGTGATCATGAAAGAGAGACCAATAATATTGGAGGAGAAGGAGGAGGAGAAGAGGAAGGTAGAAGTAGTAATTATATCACAAGGCCAAAGTCAGTGAAGTGGATGTCCTCCAAGATGAGGTTGATGCAAAAGATGACCAGCAACAACCCTGATCTCCCACCTGGTACCACTGATCATATACCAGCTGAGATTTCTGAGCATAAATTCCAAATTCATGCTCAGCCTCGAGAAATTAGCGAAACCAGCTTTTCCAGTAATGGCAACAACACTGCGACTGTTAGGGTTTGTTCTGATTGTCACACCAACTCAACCCCACTTTGGAGGAGCGGCCCTCTCGGTCCCAAGTCACTGTGCAATGCATGTGGCATTCGGCAGAGGAAAGCGAGACGAGCCATGGCAGAGGCTGCGGCTGCGGCTGCAAACCGGTTTGCTGTTGGCAGCGCCGACACTTCATCTCCAAAGGGTAAGGTGGCCAAGGAGAAGAAATCGCGGGGCAGCCATAAGAACAAGATCAGCAAGCTCGTCATCACCGACAATGCATCAATATCTCACAATAACAAGAAGAAGATTTGTTTCAAGGCTTTGGATTTTCAACGAGTGTTTCCTCAGGATGTTGCTGAAGCTGCAATGCTATTAATGGAACTCTCTTGTGGCCTAATCAATAATCACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001101 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010114 GO:0010151 GO:0010167 GO:0010187 GO:0010380 GO:0010467 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043610 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090056 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902326 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

338

Amino Acids

37.08

Weight (kDa)

8.79

Isoelectric Point (pI)

57.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013620)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g31930
malus_domestica MD08G1061600.v1.1 MD15G1060100.v1.1
prunus_persica Prupe.1G412000_v2.0.a1
pyrus_communis pycom08g05110 pycom15g05640
rosa_chinensis RchiOBHm_Chr6g0310911
rosa_laevigata RLG00000010451
rosa_multiflora Rmu_co8401939.1_g000001
rosa_roxburghii Rroxscaffold_7G00158190
rosa_rugosa Rorug06G0383900
rosa_samantha Rh6AG497800 Rh6BG507900 Rh6BG508000 Rh6CG514000 Rh6CG514100 Rh6DG500500
rosa_wichuraiana Rw6G043360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 503
AccB1I GGYRCC 1 cut(s) 503
AccBSI CCGCTC 1 cut(s) 666
AccII CGCG 1 cut(s) 829
AciI CCGC 5 cut(s) 322, 666, 746, 752, 829
AcoI YGGCCR 1 cut(s) 810
AcsI RAATTY 2 cut(s) 542, 549
AcuI CTGAAG 1 cut(s) 978
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 2 cut(s) 118, 505
AfiI CCNNNNNNNGG 2 cut(s) 456, 657
AgeI ACCGGT 1 cut(s) 762
AgsI TTSAA 3 cut(s) 287, 916, 932
AjnI CCWGG 2 cut(s) 166, 499
AloI GAACNNNNNNTCC 2 cut(s) 14, 46
AluBI AGCT 7 cut(s) 79, 107, 290, 524, 585, 859, 962
AluI AGCT 7 cut(s) 79, 107, 290, 524, 585, 859, 962
Alw26I GTCTC 2 cut(s) 350, 718
AlwNI CAGNNNCTG 1 cut(s) 743
Ama87I CYCGRG 1 cut(s) 564
AoxI GGCC 4 cut(s) 422, 667, 810, 991
ApeKI GCWGC 7 cut(s) 107, 743, 749, 755, 777, 834, 962
ApoI RAATTY 2 cut(s) 542, 549
AseI ATTAAT 1 cut(s) 974
AsiGI ACCGGT 1 cut(s) 762
Asp718I GGTACC 1 cut(s) 503
AspLEI GCGC 1 cut(s) 782
AspS9I GGNCC 3 cut(s) 319, 668, 677
AsuHPI GGTGA 3 cut(s) 81, 353, 859
AvaI CYCGRG 1 cut(s) 564
AvaII GGWCC 2 cut(s) 319, 677
AxyI CCTNAGG 1 cut(s) 945
BaeI ACNNNNGTAYC 1 cut(s) 32
BalI TGGCCA 1 cut(s) 812
BanI GGYRCC 1 cut(s) 503
BbvI GCAGC 7 cut(s) 94, 730, 736, 742, 789, 846, 949
BccI CCATC 1 cut(s) 277
BciT130I CCWGG 2 cut(s) 168, 501
BclI TGATCA 2 cut(s) 343, 511
BcoDI GTCTC 2 cut(s) 350, 718
BfoI RGCGCY 1 cut(s) 783
BlpI GCTNAGC 1 cut(s) 558
Bme1390I CCNGG 2 cut(s) 168, 501
Bme18I GGWCC 2 cut(s) 319, 677
BmeT110I CYCGRG 1 cut(s) 564
BmgT120I GGNCC 3 cut(s) 319, 668, 677
BmiI GGNNCC 2 cut(s) 505, 679
BmrFI CCNGG 2 cut(s) 168, 501
BmsI GCATC 4 cut(s) 38, 272, 453, 887
BplI GAGNNNNNCTC 2 cut(s) 655, 687
Bpu1102I GCTNAGC 1 cut(s) 558
BsaHI GRCGYC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 4 cut(s) 45, 167, 732, 813
BsaWI WCCGGW 1 cut(s) 762
BsaXI ACNNNNNCTCC 2 cut(s) 778, 808
Bsc4I CCNNNNNNNGG 2 cut(s) 456, 657
Bse118I RCCGGY 1 cut(s) 762
Bse1I ACTGG 2 cut(s) 11, 591
Bse21I CCTNAGG 1 cut(s) 945
Bse3DI GCAATG 2 cut(s) 700, 972
BseBI CCWGG 2 cut(s) 168, 501
BseDI CCNNGG 4 cut(s) 45, 167, 732, 813
BseGI GGATG 4 cut(s) 29, 263, 447, 955
BseLI CCNNNNNNNGG 2 cut(s) 456, 657
BseMI GCAATG 2 cut(s) 700, 972
BseMII CTCAG 4 cut(s) 516, 525, 572, 959
BseNI ACTGG 2 cut(s) 11, 591
BseRI GAGGAG 4 cut(s) 387, 396, 399, 676
BseXI GCAGC 7 cut(s) 94, 730, 736, 742, 789, 846, 949
BseYI CCCAGC 1 cut(s) 25
Bsh1236I CGCG 1 cut(s) 829
BshFI GGCC 4 cut(s) 424, 669, 812, 993
BshNI GGYRCC 1 cut(s) 503
BshTI ACCGGT 1 cut(s) 762
BsiHKCI CYCGRG 1 cut(s) 564
BsiSI CCGG 1 cut(s) 763
BslFI GGGAC 2 cut(s) 184, 663
BslI CCNNNNNNNGG 2 cut(s) 456, 657
BsmAI GTCTC 2 cut(s) 350, 718
BsmBI CGTCTC 1 cut(s) 718
BsmFI GGGAC 2 cut(s) 184, 663
BsmI GAATGC 1 cut(s) 705
BsnI GGCC 4 cut(s) 424, 669, 812, 993
Bso31I GGTCTC 1 cut(s) 350
BsoBI CYCGRG 1 cut(s) 564
Bsp143I GATC 7 cut(s) 64, 157, 256, 343, 490, 511, 849
Bsp1720I GCTNAGC 1 cut(s) 558
Bsp19I CCATGG 2 cut(s) 45, 732
BspACI CCGC 5 cut(s) 322, 666, 746, 752, 829
BspANI GGCC 4 cut(s) 424, 669, 812, 993
BspCNI CTCAG 4 cut(s) 517, 526, 571, 958
BspFNI CGCG 1 cut(s) 829
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 2 cut(s) 505, 679
BspT107I GGYRCC 1 cut(s) 503
BspTNI GGTCTC 1 cut(s) 350
BsrBI CCGCTC 1 cut(s) 666
BsrDI GCAATG 2 cut(s) 700, 972
BsrFI RCCGGY 1 cut(s) 762
BsrI ACTGG 2 cut(s) 11, 591
BssAI RCCGGY 1 cut(s) 762
BssECI CCNNGG 4 cut(s) 45, 167, 732, 813
BssMI GATC 7 cut(s) 64, 157, 256, 343, 490, 511, 849
BssNI GRCGYC 1 cut(s) 303
BssT1I CCWWGG 3 cut(s) 45, 732, 813
Bst2UI CCWGG 2 cut(s) 168, 501
Bst4CI ACNGT 2 cut(s) 616, 690
Bst6I CTCTTC 1 cut(s) 384
BstACI GRCGYC 1 cut(s) 303
BstAPI GCANNNNNTGC 1 cut(s) 743
BstC8I GCNNGC 2 cut(s) 57, 857
BstDEI CTNAG 4 cut(s) 525, 534, 558, 945
BstDSI CCRYGG 2 cut(s) 45, 732
BstF5I GGATG 4 cut(s) 29, 263, 447, 955
BstFNI CGCG 1 cut(s) 829
BstH2I RGCGCY 1 cut(s) 783
BstHHI GCGC 1 cut(s) 782
BstKTI GATC 7 cut(s) 67, 160, 259, 346, 493, 514, 852
BstMAI GTCTC 2 cut(s) 350, 718
BstMBI GATC 7 cut(s) 64, 157, 256, 343, 490, 511, 849
BstMWI GCNNNNNNNGC 7 cut(s) 582, 728, 743, 749, 752, 755, 962
BstNI CCWGG 2 cut(s) 168, 501
BstNSI RCATGY 1 cut(s) 702
BstSCI CCNGG 2 cut(s) 166, 499
BstUI CGCG 1 cut(s) 829
BstV1I GCAGC 7 cut(s) 94, 730, 736, 742, 789, 846, 949
Bsu36I CCTNAGG 1 cut(s) 945
BsuRI GGCC 4 cut(s) 424, 669, 812, 993
BtgI CCRYGG 2 cut(s) 45, 732
BtsCI GGATG 4 cut(s) 29, 263, 447, 955
BtsI GCAGTG 1 cut(s) 606
BtsIMutI CAGTG 5 cut(s) 18, 438, 507, 606, 686
Cac8I GCNNGC 2 cut(s) 57, 857
CaiI CAGNNNCTG 1 cut(s) 743
CciI TCATGA 1 cut(s) 346
CfoI GCGC 1 cut(s) 782
Cfr10I RCCGGY 1 cut(s) 762
Cfr13I GGNCC 3 cut(s) 319, 668, 677
CseI GACGC 1 cut(s) 311
CsiI ACCWGGT 1 cut(s) 499
Csp6I GTAC 2 cut(s) 117, 504
CspAI ACCGGT 1 cut(s) 762
CspCI CAANNNNNGTGG 2 cut(s) 682, 717
CviAII CATG 7 cut(s) 46, 114, 293, 347, 554, 699, 733
CviQI GTAC 2 cut(s) 117, 504
DdeI CTNAG 4 cut(s) 525, 534, 558, 945
DpnI GATC 7 cut(s) 66, 159, 258, 345, 492, 513, 851
DpnII GATC 7 cut(s) 64, 157, 256, 343, 490, 511, 849
EaeI YGGCCR 1 cut(s) 810
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Eco130I CCWWGG 3 cut(s) 45, 732, 813
Eco31I GGTCTC 1 cut(s) 350
Eco47I GGWCC 2 cut(s) 319, 677
Eco57I CTGAAG 1 cut(s) 978
Eco81I CCTNAGG 1 cut(s) 945
Eco88I CYCGRG 1 cut(s) 564
EcoRII CCWGG 2 cut(s) 166, 499
EcoT14I CCWWGG 3 cut(s) 45, 732, 813
EcoT22I ATGCAT 2 cut(s) 700, 880
ErhI CCWWGG 3 cut(s) 45, 732, 813
Esp3I CGTCTC 1 cut(s) 718
FaeI CATG 7 cut(s) 49, 117, 296, 350, 557, 702, 736
FaqI GGGAC 2 cut(s) 184, 663
FatI CATG 7 cut(s) 45, 113, 292, 346, 553, 698, 732
FauI CCCGC 1 cut(s) 822
FbaI TGATCA 2 cut(s) 343, 511
FokI GGATG 4 cut(s) 16, 250, 454, 962
GlaI GCGC 1 cut(s) 781
GsaI CCCAGC 1 cut(s) 29
HaeII RGCGCY 1 cut(s) 783
HaeIII GGCC 4 cut(s) 424, 669, 812, 993
HapII CCGG 1 cut(s) 763
HgaI GACGC 1 cut(s) 311
HhaI GCGC 1 cut(s) 782
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 7 cut(s) 49, 117, 296, 350, 557, 702, 736
Hin6I GCGC 1 cut(s) 780
HinP1I GCGC 1 cut(s) 780
HinfI GANTC 1 cut(s) 146
HpaII CCGG 1 cut(s) 763
HphI GGTGA 3 cut(s) 81, 353, 859
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 3 cut(s) 21, 535, 631
Hpy188III TCNNGA 5 cut(s) 333, 347, 566, 947, 1011
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 2 cut(s) 371, 389
HpyCH4III ACNGT 2 cut(s) 616, 690
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 7 cut(s) 154, 466, 693, 698, 758, 878, 965
HpyF10VI GCNNNNNNNGC 7 cut(s) 582, 728, 743, 749, 752, 755, 962
HpyF3I CTNAG 4 cut(s) 525, 534, 558, 945
HpySE526I ACGT 1 cut(s) 119
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 7 cut(s) 49, 117, 296, 350, 557, 702, 736
HspAI GCGC 1 cut(s) 780
KpnI GGTACC 1 cut(s) 507
Ksp22I TGATCA 2 cut(s) 343, 511
Kzo9I GATC 7 cut(s) 64, 157, 256, 343, 490, 511, 849
LmnI GCTCC 2 cut(s) 52, 663
Lsp1109I GCAGC 7 cut(s) 94, 730, 736, 742, 789, 846, 949
LweI GCATC 4 cut(s) 38, 272, 453, 887
MabI ACCWGGT 1 cut(s) 499
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 3 cut(s) 251, 635, 684
MalI GATC 7 cut(s) 66, 159, 258, 345, 492, 513, 851
MbiI CCGCTC 1 cut(s) 666
MboI GATC 7 cut(s) 64, 157, 256, 343, 490, 511, 849
MboII GAAGA 7 cut(s) 74, 133, 267, 401, 832, 913, 916
MlsI TGGCCA 1 cut(s) 812
MluCI AATT 4 cut(s) 409, 542, 549, 570
MluNI TGGCCA 1 cut(s) 812
MlyI GAGTC 1 cut(s) 140
Mox20I TGGCCA 1 cut(s) 812
Mph1103I ATGCAT 2 cut(s) 700, 880
MscI TGGCCA 1 cut(s) 812
MseI TTAA 1 cut(s) 974
Msp20I TGGCCA 1 cut(s) 812
MspA1I CMGCKG 1 cut(s) 524
MspI CCGG 1 cut(s) 763
MspR9I CCNGG 2 cut(s) 168, 501
Mva1269I GAATGC 1 cut(s) 705
MvaI CCWGG 2 cut(s) 168, 501
MvnI CGCG 1 cut(s) 829
MwoI GCNNNNNNNGC 7 cut(s) 582, 728, 743, 749, 752, 755, 962
NcoI CCATGG 2 cut(s) 45, 732
NdeII GATC 7 cut(s) 64, 157, 256, 343, 490, 511, 849
NlaIII CATG 7 cut(s) 49, 117, 296, 350, 557, 702, 736
NlaIV GGNNCC 2 cut(s) 505, 679
NmuCI GTSAC 2 cut(s) 635, 684
NsiI ATGCAT 2 cut(s) 700, 880
NspI RCATGY 1 cut(s) 702
PaeR7I CTCGAG 1 cut(s) 564
PagI TCATGA 1 cut(s) 346
PcsI WCGNNNNNNNCGW 2 cut(s) 309, 867
PctI GAATGC 1 cut(s) 705
PinAI ACCGGT 1 cut(s) 762
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PshBI ATTAAT 1 cut(s) 974
Psp6I CCWGG 2 cut(s) 166, 499
PspFI CCCAGC 1 cut(s) 25
PspGI CCWGG 2 cut(s) 166, 499
PspN4I GGNNCC 2 cut(s) 505, 679
PspPI GGNCC 3 cut(s) 319, 668, 677
PstNI CAGNNNCTG 1 cut(s) 743
PvuII CAGCTG 1 cut(s) 524
RsaI GTAC 2 cut(s) 118, 505
RsaNI GTAC 2 cut(s) 117, 504
SaqAI TTAA 1 cut(s) 974
Sau3AI GATC 7 cut(s) 64, 157, 256, 343, 490, 511, 849
Sau96I GGNCC 3 cut(s) 319, 668, 677
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 2 cut(s) 168, 501
SexAI ACCWGGT 1 cut(s) 499
SfaNI GCATC 4 cut(s) 38, 272, 453, 887
Sfr274I CTCGAG 1 cut(s) 564
SinI GGWCC 2 cut(s) 319, 677
SlaI CTCGAG 1 cut(s) 564
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
Sse9I AATT 4 cut(s) 409, 542, 549, 570
SsiI CCGC 5 cut(s) 322, 666, 746, 752, 829
SspI AATATT 1 cut(s) 367
StyD4I CCNGG 2 cut(s) 166, 499
StyI CCWWGG 3 cut(s) 45, 732, 813
TaaI ACNGT 2 cut(s) 616, 690
TaiI ACGT 1 cut(s) 122
TaqI TCGA 2 cut(s) 144, 565
TaqII GACCGA 1 cut(s) 665
TasI AATT 4 cut(s) 409, 542, 549, 570
TauI GCSGC 3 cut(s) 669, 749, 755
Tru1I TTAA 1 cut(s) 974
Tru9I TTAA 1 cut(s) 974
TscAI CASTG 5 cut(s) 18, 438, 514, 613, 693
TseFI GTSAC 2 cut(s) 635, 684
TseI GCWGC 7 cut(s) 107, 743, 749, 755, 777, 834, 962
Tsp45I GTSAC 2 cut(s) 635, 684
TspDTI ATGAA 5 cut(s) 102, 117, 363, 542, 780
TspRI CASTG 5 cut(s) 18, 438, 514, 613, 693
VpaK11BI GGWCC 2 cut(s) 319, 677
VspI ATTAAT 1 cut(s) 974
XapI RAATTY 2 cut(s) 542, 549
XceI RCATGY 1 cut(s) 702
XhoI CTCGAG 1 cut(s) 564
Zsp2I ATGCAT 2 cut(s) 700, 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.