Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013621

Physical Location & Seq

Genomic Coordinates Forward (+)

24597531 .. 24599029

Gene Structure 1499 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g32450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCGTTTCCAGCGTCTCTTTCATCGCCTTCGTCTTCAACCCCAAAATTTCCGCTTAATCTCTCTAAACCCAAAACCTCCCAACCCCAAAAATGCTTAATATTACGTCTCCCTCACAAACCCTTCCAGACAAGTTGTGCCAAAGTAGTGTCAATGTCCCAATTTGGTGAACCAAATAAGGGACACAATCAAGCTCTTGAAATCAAGGTTGTGAAGGAGAAGCTTCTGGAGGCCATACCCGTCACAGTTAAAGAGCTTCCATGGAAGAGAGCAGCAGACATTGCGCTGAAGCAGATGCTTTGTCTTGGGGAGAAGGCACTCAAATGGTGCCTTGTTGCTTTTTTTGTGTTGAGCTTCTTTTCAGATGTTATATTTTCGATCTCCAGGAACAGAGAACTAGTCATACCCTTTGGTCTCTTTGTGGGGTGCTTCGTTACTGAGATTTTGAAGGAGGCATTGCAGCTGGTGCTTCCCGTTTCCGAGGAGAAGGGATTCGAAAAGCACCTTATCGGAATCGGCTGCCTCTTTGCTGCTGTCAAGTTCATCTCGTATGGTCTCCCAATACAGGCGCAGGTGATAGTTCTCAATGTTGCAAATGGTGGGTTCCTGCAAGTTTTGTGGCTCTGGAGAGGTTTGTTTAACAGAAGTGATGTTGGTAATAGTGCCATGGATGTGACAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

25.14

Weight (kDa)

9.37

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013621)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32450
malus_domestica	MD08G1076300.v1.1 MD15G1063400.v1.1
prunus_persica	Prupe.1G417600_v2.0.a1
pyrus_communis	pycom15g06020
rosa_chinensis	RchiOBHm_Chr6g0310221
rosa_laevigata	RLG00000010498
rosa_multiflora	Rmu_sc0001772.1_g000051 Rmu_sc0002348.1_g000028
rosa_roxburghii	Rroxscaffold_7G00158730 Rroxscaffold_7G00158740
rosa_rugosa	Rorug06G0378300
rosa_samantha	Rh6AG492400 Rh6BG502100 Rh6CG507000 Rh6DG137000 Rh6DG493200
rosa_wichuraiana	Rw6G042850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	562
Acc36I	ACCTGC	1 cut(s)	562
AccB1I	GGYRCC	1 cut(s)	327
AciI	CCGC	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	308
AfiI	CCNNNNNNNGG	2 cut(s)	179, 565
AgsI	TTSAA	3 cut(s)	39, 200, 448
AhlI	ACTAGT	1 cut(s)	397
AjnI	CCWGG	1 cut(s)	383
AluBI	AGCT	5 cut(s)	194, 223, 256, 354, 463
AluI	AGCT	5 cut(s)	194, 223, 256, 354, 463
Alw26I	GTCTC	4 cut(s)	21, 113, 419, 560
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	4 cut(s)	272, 460, 519, 530
ApoI	RAATTY	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	491
AspLEI	GCGC	2 cut(s)	286, 571
AsuHPI	GGTGA	2 cut(s)	179, 586
AsuII	TTCGAA	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	4 cut(s)	284, 472, 506, 517
BciT130I	CCWGG	1 cut(s)	385
BcoDI	GTCTC	4 cut(s)	21, 113, 419, 560
BcuI	ACTAGT	1 cut(s)	397
BfaI	CTAG	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	562
BisI	GCNGC	4 cut(s)	273, 461, 520, 531
BlsI	GCNGC	4 cut(s)	274, 462, 521, 532
Bme1390I	CCNGG	1 cut(s)	385
BmiI	GGNNCC	2 cut(s)	329, 605
BmrFI	CCNGG	1 cut(s)	385
BmsI	GCATC	1 cut(s)	285
BpiI	GAAGAC	1 cut(s)	27
BpmI	CTGGAG	3 cut(s)	248, 367, 646
Bpu14I	TTCGAA	1 cut(s)	495
BsaI	GGTCTC	2 cut(s)	419, 560
BsaJI	CCNNGG	3 cut(s)	260, 480, 666
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 565
Bse3DI	GCAATG	2 cut(s)	279, 455
BseBI	CCWGG	1 cut(s)	385
BseDI	CCNNGG	3 cut(s)	260, 480, 666
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	2 cut(s)	179, 565
BseMI	GCAATG	2 cut(s)	279, 455
BseMII	CTCAG	1 cut(s)	429
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	4 cut(s)	284, 472, 506, 517
BshFI	GGCC	1 cut(s)	233
BshNI	GGYRCC	1 cut(s)	327
BslFI	GGGAC	2 cut(s)	142, 195
BslI	CCNNNNNNNGG	2 cut(s)	179, 565
BsmAI	GTCTC	4 cut(s)	21, 113, 419, 560
BsmBI	CGTCTC	2 cut(s)	21, 113
BsmFI	GGGAC	2 cut(s)	142, 195
BsnI	GGCC	1 cut(s)	233
Bso31I	GGTCTC	2 cut(s)	419, 560
Bsp119I	TTCGAA	1 cut(s)	495
Bsp143I	GATC	1 cut(s)	378
Bsp19I	CCATGG	2 cut(s)	260, 666
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	1 cut(s)	430
BspLI	GGNNCC	2 cut(s)	329, 605
BspMI	ACCTGC	1 cut(s)	562
BspT104I	TTCGAA	1 cut(s)	495
BspT107I	GGYRCC	1 cut(s)	327
BspTNI	GGTCTC	2 cut(s)	419, 560
BsrDI	GCAATG	2 cut(s)	279, 455
BssECI	CCNNGG	3 cut(s)	260, 480, 666
BssMI	GATC	1 cut(s)	378
BssT1I	CCWWGG	2 cut(s)	260, 666
Bst2UI	CCWGG	1 cut(s)	385
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	260
BstAPI	GCANNNNNTGC	2 cut(s)	281, 466
BstBI	TTCGAA	1 cut(s)	495
BstDEI	CTNAG	1 cut(s)	438
BstDSI	CCRYGG	2 cut(s)	260, 666
BstF5I	GGATG	1 cut(s)	676
BstHHI	GCGC	2 cut(s)	286, 571
BstKTI	GATC	1 cut(s)	381
BstMAI	GTCTC	4 cut(s)	21, 113, 419, 560
BstMBI	GATC	1 cut(s)	378
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 281, 466
BstNI	CCWGG	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	383
BstV1I	GCAGC	4 cut(s)	284, 472, 506, 517
BstV2I	GAAGAC	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	233
BtgI	CCRYGG	2 cut(s)	260, 666
BtgZI	GCGATG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	676
BveI	ACCTGC	1 cut(s)	562
CfoI	GCGC	2 cut(s)	286, 571
CseI	GACGC	1 cut(s)	3
CspCI	CAANNNNNGTGG	2 cut(s)	599, 634
CviAII	CATG	2 cut(s)	261, 667
CviJI	RGCY	8 cut(s)	194, 223, 233, 256, 354, 463, 519, 622
CviKI_1	RGCY	8 cut(s)	194, 223, 233, 256, 354, 463, 519, 622
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	1 cut(s)	380
DpnII	GATC	1 cut(s)	378
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	2 cut(s)	260, 666
Eco31I	GGTCTC	2 cut(s)	419, 560
Eco57I	CTGAAG	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	383
EcoT14I	CCWWGG	2 cut(s)	260, 666
ErhI	CCWWGG	2 cut(s)	260, 666
Esp3I	CGTCTC	2 cut(s)	21, 113
FaeI	CATG	2 cut(s)	264, 670
FaiI	YATR	6 cut(s)	236, 262, 371, 404, 552, 668
FaqI	GGGAC	2 cut(s)	142, 195
FatI	CATG	2 cut(s)	260, 666
Fnu4HI	GCNGC	4 cut(s)	273, 461, 520, 531
Fsp4HI	GCNGC	4 cut(s)	273, 461, 520, 531
FspBI	CTAG	1 cut(s)	398
GlaI	GCGC	2 cut(s)	285, 570
GluI	GCNGC	4 cut(s)	273, 461, 520, 531
GsuI	CTGGAG	3 cut(s)	248, 367, 646
HaeIII	GGCC	1 cut(s)	233
HgaI	GACGC	1 cut(s)	3
HhaI	GCGC	2 cut(s)	286, 571
Hin1II	CATG	2 cut(s)	264, 670
Hin6I	GCGC	2 cut(s)	284, 569
HinP1I	GCGC	2 cut(s)	284, 569
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	2 cut(s)	492, 513
HphI	GGTGA	2 cut(s)	179, 586
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	3 cut(s)	364, 481, 512
Hpy188III	TCNNGA	4 cut(s)	127, 197, 227, 625
Hpy8I	GTNNAC	1 cut(s)	170
HpyAV	CCTTC	6 cut(s)	39, 133, 208, 307, 442, 481
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	3 cut(s)	460, 593, 610
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 281, 466
HpyF3I	CTNAG	1 cut(s)	438
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	2 cut(s)	264, 670
HspAI	GCGC	2 cut(s)	284, 569
Kzo9I	GATC	1 cut(s)	378
Lsp1109I	GCAGC	4 cut(s)	284, 472, 506, 517
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	3 cut(s)	241, 433, 673
MalI	GATC	1 cut(s)	380
MboI	GATC	1 cut(s)	378
MboII	GAAGA	2 cut(s)	27, 277
MluCI	AATT	2 cut(s)	47, 161
MnlI	CCTC	7 cut(s)	88, 123, 223, 445, 475, 533, 623
MroXI	GAANNNNTTC	1 cut(s)	491
MseI	TTAA	4 cut(s)	57, 98, 249, 639
MslI	CAYNNNNRTG	2 cut(s)	322, 671
MspA1I	CMGCKG	1 cut(s)	463
MspR9I	CCNGG	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	385
MwoI	GCNNNNNNNGC	3 cut(s)	11, 281, 466
NcoI	CCATGG	2 cut(s)	260, 666
NdeII	GATC	1 cut(s)	378
NlaIII	CATG	2 cut(s)	264, 670
NlaIV	GGNNCC	2 cut(s)	329, 605
NmuCI	GTSAC	2 cut(s)	241, 673
NspV	TTCGAA	1 cut(s)	495
PaqCI	CACCTGC	1 cut(s)	562
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	2 cut(s)	492, 513
PfoI	TCCNGGA	1 cut(s)	383
PkrI	GCNGC	4 cut(s)	274, 462, 521, 532
Psp6I	CCWGG	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	383
PspN4I	GGNNCC	2 cut(s)	329, 605
PsrI	GAACNNNNNNTAC	2 cut(s)	387, 419
PvuII	CAGCTG	1 cut(s)	463
RseI	CAYNNNNRTG	2 cut(s)	322, 671
SaqAI	TTAA	4 cut(s)	57, 98, 249, 639
SatI	GCNGC	4 cut(s)	273, 461, 520, 531
Sau3AI	GATC	1 cut(s)	378
ScrFI	CCNGG	1 cut(s)	385
SfaNI	GCATC	1 cut(s)	285
SfuI	TTCGAA	1 cut(s)	495
SmiMI	CAYNNNNRTG	2 cut(s)	322, 671
SpeI	ACTAGT	1 cut(s)	397
Sse9I	AATT	2 cut(s)	47, 161
SsiI	CCGC	1 cut(s)	53
SspI	AATATT	1 cut(s)	102
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	383
StyI	CCWWGG	2 cut(s)	260, 666
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	2 cut(s)	377, 495
TasI	AATT	2 cut(s)	47, 161
TfiI	GAWTC	2 cut(s)	492, 513
Tru1I	TTAA	4 cut(s)	57, 98, 249, 639
Tru9I	TTAA	4 cut(s)	57, 98, 249, 639
TseFI	GTSAC	2 cut(s)	241, 673
TseI	GCWGC	4 cut(s)	272, 460, 519, 530
Tsp45I	GTSAC	2 cut(s)	241, 673
TspDTI	ATGAA	2 cut(s)	12, 532
XapI	RAATTY	1 cut(s)	47
XmnI	GAANNNNTTC	1 cut(s)	491
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.