Rw6G042850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013621
Physical Location & Seq
Reverse (-)
66249536 .. 66250324
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G042850.1

Sequence Viewer

Length: 675 bp
ATGGCGTTTCCAGCGTCTCTTTCATCGCCTTCGTCTTCAACCCCAAAATTTCCGATTAATCTCTCTAAACCCAAACCCTCTCAACCCCAGAAATGCTTGATCTTACGTCTCCGTCACAAACCCTTCCAGACAAGTTGTACCAAAGTAGTATCAATGGCCCAATTCGATGAACCAAATAAGGGTCACAATCCGGGTCTGCGAATCAAGGTTGTGAAGGAGATGCTTATGGAAACCATACCTGACCCAGTTAAAGAGCTTCCATGGAAGAGAGCAGCAGACATTGCTCTGAAGCAGCTGCTTTTTCTTGGGGAGAAGGCACTCAAATGGTGCCTCATTGCTTTCTTTGTGTTGAGCTTCTTTTCAGATGTCATATTTTCGATCTCCAAGAACAGAGAACTGGTTATACCTTTTGGTCTCTTTGTTGGGTGCTTAGTTACCGACATTTTGAAAGAGACATTGCAACAAGTGATCCCATTTCAGAGGAGAAGGGATTCGAAAAGCACCTTATCGGAATCGGCTGCCTCTTTGCTGCTGTTAATGTTTCTTCTAAATGTGGCAAATGGCGGGTTCCTGCAAGTTTTGTGGCTCTGGAGGGGTTTGTTGAACAAAAGTGACGAAGAAGATGATGTTGGTAATAGTACCGATACTTCATTGGTCATGGATGGGAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

25.14

Weight (kDa)

9.32

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 327
AciI CCGC 1 cut(s) 564
AclWI GGATC 1 cut(s) 463
AcsI RAATTY 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 308
AfaI GTAC 2 cut(s) 139, 640
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 3 cut(s) 39, 448, 604
AjuI GAANNNNNNNTTGG 2 cut(s) 612, 644
AluBI AGCT 3 cut(s) 256, 295, 354
AluI AGCT 3 cut(s) 256, 295, 354
Alw26I GTCTC 4 cut(s) 21, 113, 419, 446
AlwI GGATC 1 cut(s) 463
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 5 cut(s) 272, 292, 295, 518, 529
ApoI RAATTY 1 cut(s) 47
AseI ATTAAT 1 cut(s) 57
Asp700I GAANNNNTTC 1 cut(s) 490
AspS9I GGNCC 1 cut(s) 157
AsuC2I CCSGG 1 cut(s) 192
AsuII TTCGAA 1 cut(s) 494
BanI GGYRCC 1 cut(s) 327
BarI GAAGNNNNNNTAC 2 cut(s) 631, 663
BbsI GAAGAC 1 cut(s) 27
BbvI GCAGC 5 cut(s) 282, 284, 304, 505, 516
BccI CCATC 1 cut(s) 656
BcnI CCSGG 1 cut(s) 192
BcoDI GTCTC 4 cut(s) 21, 113, 419, 446
BisI GCNGC 5 cut(s) 273, 293, 296, 519, 530
BlsI GCNGC 5 cut(s) 274, 294, 297, 520, 531
Bme1390I CCNGG 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 2 cut(s) 329, 569
BmrFI CCNGG 1 cut(s) 192
BmrI ACTGGG 1 cut(s) 239
BmsI GCATC 1 cut(s) 210
BmuI ACTGGG 1 cut(s) 239
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 610
Bpu14I TTCGAA 1 cut(s) 494
BpuMI CCSGG 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse1I ACTGG 2 cut(s) 245, 402
Bse3DI GCAATG 3 cut(s) 279, 333, 455
BseDI CCNNGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 667
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMI GCAATG 3 cut(s) 279, 333, 455
BseNI ACTGG 2 cut(s) 245, 402
BseRI GAGGAG 1 cut(s) 496
BseXI GCAGC 5 cut(s) 282, 284, 304, 505, 516
BshFI GGCC 1 cut(s) 158
BshNI GGYRCC 1 cut(s) 327
BsiSI CCGG 1 cut(s) 191
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 4 cut(s) 21, 113, 419, 446
BsmBI CGTCTC 2 cut(s) 21, 113
BsnI GGCC 1 cut(s) 158
Bso31I GGTCTC 1 cut(s) 419
Bsp119I TTCGAA 1 cut(s) 494
Bsp143I GATC 3 cut(s) 99, 378, 468
Bsp19I CCATGG 1 cut(s) 260
BspACI CCGC 1 cut(s) 564
BspANI GGCC 1 cut(s) 158
BspLI GGNNCC 2 cut(s) 329, 569
BspPI GGATC 1 cut(s) 463
BspT104I TTCGAA 1 cut(s) 494
BspT107I GGYRCC 1 cut(s) 327
BspTNI GGTCTC 1 cut(s) 419
BsrDI GCAATG 3 cut(s) 279, 333, 455
BsrI ACTGG 2 cut(s) 245, 402
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 3 cut(s) 99, 378, 468
BssT1I CCWWGG 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 260
BstAPI GCANNNNNTGC 1 cut(s) 281
BstBI TTCGAA 1 cut(s) 494
BstDEI CTNAG 1 cut(s) 430
BstDSI CCRYGG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 667
BstKTI GATC 3 cut(s) 102, 381, 471
BstMAI GTCTC 4 cut(s) 21, 113, 419, 446
BstMBI GATC 3 cut(s) 99, 378, 468
BstMWI GCNNNNNNNGC 2 cut(s) 11, 281
BstSCI CCNGG 1 cut(s) 190
BstV1I GCAGC 5 cut(s) 282, 284, 304, 505, 516
BstV2I GAAGAC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 158
BtgI CCRYGG 1 cut(s) 260
BtgZI GCGATG 1 cut(s) 9
BtsCI GGATG 1 cut(s) 667
Cfr13I GGNCC 1 cut(s) 157
CseI GACGC 1 cut(s) 3
Csp6I GTAC 2 cut(s) 138, 639
CspCI CAANNNNNGTGG 2 cut(s) 563, 598
CviAII CATG 2 cut(s) 261, 658
CviJI RGCY 6 cut(s) 158, 256, 295, 354, 518, 586
CviKI_1 RGCY 6 cut(s) 158, 256, 295, 354, 518, 586
CviQI GTAC 2 cut(s) 138, 639
DdeI CTNAG 1 cut(s) 430
DpnI GATC 3 cut(s) 101, 380, 470
DpnII GATC 3 cut(s) 99, 378, 468
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 260
Eco31I GGTCTC 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 260
Esp3I CGTCTC 2 cut(s) 21, 113
FaeI CATG 2 cut(s) 264, 661
FaiI YATR 6 cut(s) 227, 236, 262, 371, 404, 659
FatI CATG 2 cut(s) 260, 657
FauI CCCGC 1 cut(s) 557
Fnu4HI GCNGC 5 cut(s) 273, 293, 296, 519, 530
Fsp4HI GCNGC 5 cut(s) 273, 293, 296, 519, 530
GluI GCNGC 5 cut(s) 273, 293, 296, 519, 530
GsuI CTGGAG 1 cut(s) 610
HaeIII GGCC 1 cut(s) 158
HapII CCGG 1 cut(s) 191
HgaI GACGC 1 cut(s) 3
Hin1II CATG 2 cut(s) 264, 661
HinfI GANTC 3 cut(s) 201, 491, 512
HpaII CCGG 1 cut(s) 191
Hpy188I TCNGA 5 cut(s) 54, 288, 364, 480, 511
Hpy188III TCNNGA 2 cut(s) 127, 589
HpyAV CCTTC 5 cut(s) 39, 133, 208, 307, 480
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 2 cut(s) 460, 574
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 281
HpyF3I CTNAG 1 cut(s) 430
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 2 cut(s) 264, 661
Kzo9I GATC 3 cut(s) 99, 378, 468
LpnPI CCDG 9 cut(s) 24, 101, 140, 204, 252, 258, 383, 574, 584
Lsp1109I GCAGC 5 cut(s) 282, 284, 304, 505, 516
LweI GCATC 1 cut(s) 210
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 4 cut(s) 113, 182, 433, 611
MalI GATC 3 cut(s) 101, 380, 470
MboI GATC 3 cut(s) 99, 378, 468
MboII GAAGA 5 cut(s) 27, 277, 536, 629, 632
MluCI AATT 2 cut(s) 47, 161
MnlI CCTC 5 cut(s) 88, 341, 474, 532, 585
MroXI GAANNNNTTC 1 cut(s) 490
MseI TTAA 3 cut(s) 57, 249, 536
MslI CAYNNNNRTG 1 cut(s) 322
MspA1I CMGCKG 1 cut(s) 295
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 11, 281
NciI CCSGG 1 cut(s) 192
NcoI CCATGG 1 cut(s) 260
NdeII GATC 3 cut(s) 99, 378, 468
NlaIII CATG 2 cut(s) 264, 661
NlaIV GGNNCC 2 cut(s) 329, 569
NmuCI GTSAC 3 cut(s) 113, 182, 611
NspV TTCGAA 1 cut(s) 494
PdmI GAANNNNTTC 1 cut(s) 490
PfeI GAWTC 3 cut(s) 201, 491, 512
PkrI GCNGC 5 cut(s) 274, 294, 297, 520, 531
PshBI ATTAAT 1 cut(s) 57
PspN4I GGNNCC 2 cut(s) 329, 569
PspPI GGNCC 1 cut(s) 157
PsrI GAACNNNNNNTAC 2 cut(s) 387, 419
PvuII CAGCTG 1 cut(s) 295
RsaI GTAC 2 cut(s) 139, 640
RsaNI GTAC 2 cut(s) 138, 639
RseI CAYNNNNRTG 1 cut(s) 322
SaqAI TTAA 3 cut(s) 57, 249, 536
SatI GCNGC 5 cut(s) 273, 293, 296, 519, 530
Sau3AI GATC 3 cut(s) 99, 378, 468
Sau96I GGNCC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 192
SetI ASST 8 cut(s) 109, 210, 241, 258, 297, 356, 409, 506
SfaNI GCATC 1 cut(s) 210
SfuI TTCGAA 1 cut(s) 494
SmiMI CAYNNNNRTG 1 cut(s) 322
Sse9I AATT 2 cut(s) 47, 161
SsiI CCGC 1 cut(s) 564
StyD4I CCNGG 1 cut(s) 190
StyI CCWWGG 1 cut(s) 260
TaiI ACGT 1 cut(s) 109
TaqI TCGA 3 cut(s) 165, 377, 494
TasI AATT 2 cut(s) 47, 161
TfiI GAWTC 3 cut(s) 201, 491, 512
Tru1I TTAA 3 cut(s) 57, 249, 536
Tru9I TTAA 3 cut(s) 57, 249, 536
TseFI GTSAC 3 cut(s) 113, 182, 611
TseI GCWGC 5 cut(s) 272, 292, 295, 518, 529
Tsp45I GTSAC 3 cut(s) 113, 182, 611
TspDTI ATGAA 3 cut(s) 12, 183, 639
TspGWI ACGGA 1 cut(s) 101
VspI ATTAAT 1 cut(s) 57
XapI RAATTY 1 cut(s) 47
XmnI GAANNNNTTC 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.