Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013621

Physical Location & Seq

Genomic Coordinates Forward (+)

4372207 .. 4373087

Gene Structure 881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1063400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAAAAAAAGCGGCAGATACAGCGCCGGAGCAGCTACTTTTGCTTGGGAAAAAAGCATATATATGGTTATTTGTTACTTTGGGCATCCCTGCTTCTTATCAGACATCATATTTTCCATCTCCAGAAACTATGAATTGGTGATACCATTTGGTCTGTTTGTTGGGTGCTTCTTGACTGATGTTTTGGAAGAGGCATTGCTGCAATTGCTTCCCAGCTCAGAGGAGAATGCCACCAATGGGATCGAAAAGTACTTATTTGGTATAAGCTACTTTTTAGCTGCTGTTAAATTTGTCTCTGCTGGTCTCCCAATGCAGGCAAGGGGGTTTCTTCTGCACGTTGTGGTTGCGGAGAGGTTTGTTCAACAGAAACAGATGAAGATGATGTCGATAATCGCAATTCTTCACTGGTCATGGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.74

Weight (kDa)

7.72

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013621)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32450
malus_domestica	MD08G1076300.v1.1 MD15G1063400.v1.1
prunus_persica	Prupe.1G417600_v2.0.a1
pyrus_communis	pycom15g06020
rosa_chinensis	RchiOBHm_Chr6g0310221
rosa_laevigata	RLG00000010498
rosa_multiflora	Rmu_sc0001772.1_g000051 Rmu_sc0002348.1_g000028
rosa_roxburghii	Rroxscaffold_7G00158730 Rroxscaffold_7G00158740
rosa_rugosa	Rorug06G0378300
rosa_samantha	Rh6AG492400 Rh6BG502100 Rh6CG507000 Rh6DG137000 Rh6DG493200
rosa_wichuraiana	Rw6G042850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	12, 347
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	287
AdeI	CACNNNGTG	1 cut(s)	340
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	237, 313
AgsI	TTSAA	1 cut(s)	362
AjiI	CACGTC	1 cut(s)	417
AluBI	AGCT	4 cut(s)	35, 216, 267, 278
AluI	AGCT	4 cut(s)	35, 216, 267, 278
Alw26I	GTCTC	2 cut(s)	298, 308
AlwI	GGATC	1 cut(s)	248
ApeKI	GCWGC	3 cut(s)	32, 199, 278
ApoI	RAATTY	1 cut(s)	287
ArsI	GACNNNNNNTTYG	2 cut(s)	166, 198
AspLEI	GCGC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	151
BbvI	GCAGC	3 cut(s)	44, 186, 265
BccI	CCATC	1 cut(s)	125
BcoDI	GTCTC	2 cut(s)	298, 308
BfoI	RGCGCY	1 cut(s)	27
BisI	GCNGC	4 cut(s)	13, 33, 200, 279
BlsI	GCNGC	4 cut(s)	14, 34, 201, 280
BmcAI	AGTACT	1 cut(s)	251
BmgBI	CACGTC	1 cut(s)	417
BmsI	GCATC	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	2 cut(s)	237, 313
Bse1I	ACTGG	1 cut(s)	410
Bse3DI	GCAATG	1 cut(s)	194
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	2 cut(s)	237, 313
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	410
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	3 cut(s)	44, 186, 265
BseYI	CCCAGC	1 cut(s)	212
BsgI	GTGCAG	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	237, 313
BsmAI	GTCTC	2 cut(s)	298, 308
BsmI	GAATGC	1 cut(s)	232
Bso31I	GGTCTC	1 cut(s)	308
Bsp143I	GATC	1 cut(s)	240
BspACI	CCGC	2 cut(s)	12, 347
BspCNI	CTCAG	1 cut(s)	230
BspPI	GGATC	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	410
BssMI	GATC	1 cut(s)	240
Bst6I	CTCTTC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	85
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	1 cut(s)	243
BstMAI	GTCTC	2 cut(s)	298, 308
BstMBI	GATC	1 cut(s)	240
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 32, 41, 205
BstV1I	GCAGC	3 cut(s)	44, 186, 265
BtrI	CACGTC	1 cut(s)	417
BtsCI	GGATG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	315
CfoI	GCGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	1 cut(s)	411
CviJI	RGCY	4 cut(s)	35, 216, 267, 278
CviKI_1	RGCY	4 cut(s)	35, 216, 267, 278
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	1 cut(s)	217
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
DraIII	CACNNNGTG	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	308
FaeI	CATG	1 cut(s)	414
FaiI	YATR	8 cut(s)	59, 61, 63, 65, 110, 132, 263, 412
FatI	CATG	1 cut(s)	410
Fnu4HI	GCNGC	4 cut(s)	13, 33, 200, 279
FokI	GGATG	1 cut(s)	72
Fsp4HI	GCNGC	4 cut(s)	13, 33, 200, 279
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	4 cut(s)	13, 33, 200, 279
GsaI	CCCAGC	1 cut(s)	216
GsuI	CTGGAG	1 cut(s)	106
HaeII	RGCGCY	1 cut(s)	27
HapII	CCGG	1 cut(s)	27
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	414
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	103, 220
Hpy188III	TCNNGA	2 cut(s)	123, 172
HpyCH4IV	ACGT	2 cut(s)	336, 416
HpyCH4V	TGCA	3 cut(s)	202, 313, 334
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 32, 41, 205
HpyF3I	CTNAG	1 cut(s)	217
HpySE526I	ACGT	2 cut(s)	336, 416
Hsp92II	CATG	1 cut(s)	414
HspAI	GCGC	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	7 cut(s)	40, 103, 136, 226, 285, 299, 391
Lsp1109I	GCAGC	3 cut(s)	44, 186, 265
LweI	GCATC	1 cut(s)	94
MaeII	ACGT	2 cut(s)	336, 416
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	1 cut(s)	242
MboI	GATC	1 cut(s)	240
MboII	GAAGA	4 cut(s)	200, 320, 388, 392
MfeI	CAATTG	1 cut(s)	203
MluCI	AATT	4 cut(s)	134, 203, 287, 396
MnlI	CCTC	3 cut(s)	184, 214, 345
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	2 cut(s)	62, 415
MspI	CCGG	1 cut(s)	27
MunI	CAATTG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	232
MwoI	GCNNNNNNNGC	4 cut(s)	21, 32, 41, 205
NdeII	GATC	1 cut(s)	240
NlaIII	CATG	1 cut(s)	414
PctI	GAATGC	1 cut(s)	232
PkrI	GCNGC	4 cut(s)	14, 34, 201, 280
PspFI	CCCAGC	1 cut(s)	212
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
RseI	CAYNNNNRTG	2 cut(s)	62, 415
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	4 cut(s)	13, 33, 200, 279
Sau3AI	GATC	1 cut(s)	240
ScaI	AGTACT	1 cut(s)	251
SetI	ASST	7 cut(s)	37, 218, 269, 280, 339, 356, 419
SfaNI	GCATC	1 cut(s)	94
SmiMI	CAYNNNNRTG	2 cut(s)	62, 415
Sse9I	AATT	4 cut(s)	134, 203, 287, 396
SsiI	CCGC	2 cut(s)	12, 347
TaiI	ACGT	2 cut(s)	339, 419
TaqI	TCGA	2 cut(s)	243, 386
TasI	AATT	4 cut(s)	134, 203, 287, 396
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	410
TseI	GCWGC	3 cut(s)	32, 199, 278
TspDTI	ATGAA	3 cut(s)	17, 147, 389
TspRI	CASTG	1 cut(s)	410
XapI	RAATTY	1 cut(s)	287
ZrmI	AGTACT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.