Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0013621

Physical Location & Seq

Genomic Coordinates Forward (+)

6219165 .. 6220195

Gene Structure 1031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1076300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCGATTCCGGCGTCCATTCTGTCGCCGCCGTCCGCAACCCCCAAATTTTCGATTAATCTCTTTAAGCAGAACCAATTTCGATTTCGAACCAGCTTCCCGCCAAGTCGTGTAAAAGCAGTTTCATCCACGGCACAATTTGGAGAACCCAACAAAGAAAATAAGCGGAAGCTGCAAATCAAAAGCACTTTCGTGAAGGAGAAGCTGTGGGAAGCCGTACCTGCCCCGGTGAAGGAGCTCCCATGGAGAAAAGCAGCAGATACAGCACTGGAGCAGCTGCTTCTGCTTGGGAAAAAAGCACTCATATGGTCATTTGTTACTTTTGGCACCCTCAGCTTCTTATCAGACATCATATTTTCCATCTCCAGAAACTATGAATTGGTGATACCATTTGGTCTCTTTGTTGGGTGCTTCTTAACTGATGTTTTGAAGGAGACGTTGCAGCAAGTGCTTCCCAGGTCGGAGGCGAATGCCAATGAGATTGAAAAGCACTTACTTGGTATAAGCTGCTTTTTTGCTGCTGTTAAGTTCGTCTCTGCTGGTCTCCCAATGCAGGCACGGGTGTTTCTTCTGCACGTTGCAAATGGCGGGTTCCTGCAAGTTTTATGGCTGTGGAGAGGTTTGTTCAAGGAAAGAGAAGATGATGGTGTCGATGATTCCAATTCTTCATTGGTCATGGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

25.63

Weight (kDa)

9.39

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013621)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32450
malus_domestica	MD08G1076300.v1.1 MD15G1063400.v1.1
prunus_persica	Prupe.1G417600_v2.0.a1
pyrus_communis	pycom15g06020
rosa_chinensis	RchiOBHm_Chr6g0310221
rosa_laevigata	RLG00000010498
rosa_multiflora	Rmu_sc0001772.1_g000051 Rmu_sc0002348.1_g000028
rosa_roxburghii	Rroxscaffold_7G00158730 Rroxscaffold_7G00158740
rosa_rugosa	Rorug06G0378300
rosa_samantha	Rh6AG492400 Rh6BG502100 Rh6CG507000 Rh6DG137000 Rh6DG493200
rosa_wichuraiana	Rw6G042850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	229
AccB1I	GGYRCC	1 cut(s)	326
AciI	CCGC	5 cut(s)	29, 36, 101, 166, 588
AcsI	RAATTY	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	2 cut(s)	232, 553
AgsI	TTSAA	3 cut(s)	430, 485, 628
AjnI	CCWGG	1 cut(s)	455
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AleI	CACNNNNGTG	1 cut(s)	191
AluBI	AGCT	7 cut(s)	96, 172, 205, 238, 277, 336, 507
AluI	AGCT	7 cut(s)	96, 172, 205, 238, 277, 336, 507
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	4 cut(s)	401, 428, 538, 548
ApeKI	GCWGC	7 cut(s)	172, 254, 274, 277, 442, 507, 518
ApoI	RAATTY	1 cut(s)	47
AseI	ATTAAT	1 cut(s)	57
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	241, 394
AsuII	TTCGAA	1 cut(s)	88
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	240
BbvCI	CCTCAGC	1 cut(s)	332
BbvI	GCAGC	7 cut(s)	159, 264, 266, 286, 454, 494, 505
BccI	CCATC	2 cut(s)	368, 638
BceAI	ACGGC	3 cut(s)	16, 147, 200
BciT130I	CCWGG	1 cut(s)	457
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	4 cut(s)	401, 428, 538, 548
BfuAI	ACCTGC	1 cut(s)	229
BisI	GCNGC	8 cut(s)	29, 173, 255, 275, 278, 443, 508, 519
BlsI	GCNGC	8 cut(s)	30, 174, 256, 276, 279, 444, 509, 520
Bme1390I	CCNGG	2 cut(s)	227, 457
BmiI	GGNNCC	2 cut(s)	328, 593
BmrFI	CCNGG	2 cut(s)	227, 457
BpmI	CTGGAG	2 cut(s)	290, 349
Bpu10I	CCTNAGC	1 cut(s)	332
Bpu14I	TTCGAA	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	14
BsaI	GGTCTC	2 cut(s)	401, 548
BsaJI	CCNNGG	4 cut(s)	129, 225, 242, 455
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 553
Bse1I	ACTGG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	457
BseDI	CCNNGG	4 cut(s)	129, 225, 242, 455
BseGI	GGATG	1 cut(s)	125
BseLI	CCNNNNNNNGG	2 cut(s)	232, 553
BseMII	CTCAG	1 cut(s)	346
BseNI	ACTGG	1 cut(s)	273
BseXI	GCAGC	7 cut(s)	159, 264, 266, 286, 454, 494, 505
BsgI	GTGCAG	1 cut(s)	557
BshNI	GGYRCC	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	11, 227
BslI	CCNNNNNNNGG	2 cut(s)	232, 553
BsmAI	GTCTC	4 cut(s)	401, 428, 538, 548
BsmBI	CGTCTC	2 cut(s)	428, 538
BsmI	GAATGC	1 cut(s)	475
Bso31I	GGTCTC	2 cut(s)	401, 548
Bsp119I	TTCGAA	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp19I	CCATGG	1 cut(s)	242
BspACI	CCGC	5 cut(s)	29, 36, 101, 166, 588
BspCNI	CTCAG	1 cut(s)	345
BspLI	GGNNCC	2 cut(s)	328, 593
BspMI	ACCTGC	1 cut(s)	229
BspT104I	TTCGAA	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	326
BspTNI	GGTCTC	2 cut(s)	401, 548
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	4 cut(s)	129, 225, 242, 455
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	457
BstACI	GRCGYC	1 cut(s)	14
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstBI	TTCGAA	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	1 cut(s)	332
BstDSI	CCRYGG	2 cut(s)	129, 242
BstF5I	GGATG	1 cut(s)	125
BstMAI	GTCTC	4 cut(s)	401, 428, 538, 548
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 172, 221, 263, 283, 333, 448
BstNI	CCWGG	1 cut(s)	457
BstSCI	CCNGG	2 cut(s)	225, 455
BstV1I	GCAGC	7 cut(s)	159, 264, 266, 286, 454, 494, 505
BtgI	CCRYGG	2 cut(s)	129, 242
BtsCI	GGATG	1 cut(s)	125
BtsIMutI	CAGTG	1 cut(s)	266
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	555
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	2 cut(s)	243, 676
CviJI	RGCY	9 cut(s)	96, 172, 205, 215, 238, 277, 336, 507, 610
CviKI_1	RGCY	9 cut(s)	96, 172, 205, 215, 238, 277, 336, 507, 610
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	1 cut(s)	332
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	240
Eco31I	GGTCTC	2 cut(s)	401, 548
Eco53kI	GAGCTC	1 cut(s)	238
EcoICRI	GAGCTC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	455
EcoT14I	CCWWGG	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	242
Esp3I	CGTCTC	2 cut(s)	428, 538
FaeI	CATG	2 cut(s)	246, 679
FaiI	YATR	8 cut(s)	244, 305, 307, 353, 375, 503, 607, 677
FatI	CATG	2 cut(s)	242, 675
FauI	CCCGC	2 cut(s)	108, 581
FauNDI	CATATG	1 cut(s)	305
Fnu4HI	GCNGC	8 cut(s)	29, 173, 255, 275, 278, 443, 508, 519
FokI	GGATG	1 cut(s)	112
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	8 cut(s)	29, 173, 255, 275, 278, 443, 508, 519
GluI	GCNGC	8 cut(s)	29, 173, 255, 275, 278, 443, 508, 519
GsuI	CTGGAG	2 cut(s)	290, 349
HapII	CCGG	2 cut(s)	11, 227
HgaI	GACGC	1 cut(s)	3
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	2 cut(s)	246, 679
HinfI	GANTC	2 cut(s)	7, 656
HpaII	CCGG	2 cut(s)	11, 227
HphI	GGTGA	2 cut(s)	241, 394
Hpy188I	TCNGA	2 cut(s)	346, 463
Hpy188III	TCNNGA	2 cut(s)	193, 366
HpyAV	CCTTC	3 cut(s)	190, 226, 424
HpyCH4IV	ACGT	2 cut(s)	437, 576
HpyCH4V	TGCA	6 cut(s)	175, 442, 553, 574, 581, 598
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 172, 221, 263, 283, 333, 448
HpyF3I	CTNAG	1 cut(s)	332
HpySE526I	ACGT	2 cut(s)	437, 576
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	246, 679
LmnI	GCTCC	3 cut(s)	235, 243, 271
Lsp1109I	GCAGC	7 cut(s)	159, 264, 266, 286, 454, 494, 505
MaeII	ACGT	2 cut(s)	437, 576
MaeIII	GTNAC	1 cut(s)	316
MboII	GAAGA	3 cut(s)	560, 650, 657
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	5 cut(s)	47, 77, 137, 377, 661
MmeI	TCCRAC	1 cut(s)	441
MnlI	CCTC	3 cut(s)	341, 457, 611
MseI	TTAA	4 cut(s)	57, 66, 416, 525
MslI	CAYNNNNRTG	2 cut(s)	191, 304
MspA1I	CMGCKG	1 cut(s)	277
MspI	CCGG	2 cut(s)	11, 227
MspR9I	CCNGG	2 cut(s)	227, 457
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	457
MwoI	GCNNNNNNNGC	7 cut(s)	11, 172, 221, 263, 283, 333, 448
NciI	CCSGG	1 cut(s)	227
NcoI	CCATGG	1 cut(s)	242
NdeI	CATATG	1 cut(s)	305
NlaIII	CATG	2 cut(s)	246, 679
NlaIV	GGNNCC	2 cut(s)	328, 593
NspV	TTCGAA	1 cut(s)	88
OliI	CACNNNNGTG	1 cut(s)	191
PctI	GAATGC	1 cut(s)	475
PfeI	GAWTC	2 cut(s)	7, 656
PkrI	GCNGC	8 cut(s)	30, 174, 256, 276, 279, 444, 509, 520
PshBI	ATTAAT	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	455
PspN4I	GGNNCC	2 cut(s)	328, 593
PvuII	CAGCTG	1 cut(s)	277
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
RseI	CAYNNNNRTG	2 cut(s)	191, 304
SacI	GAGCTC	1 cut(s)	240
SaqAI	TTAA	4 cut(s)	57, 66, 416, 525
SatI	GCNGC	8 cut(s)	29, 173, 255, 275, 278, 443, 508, 519
ScrFI	CCNGG	2 cut(s)	227, 457
SduI	GDGCHC	1 cut(s)	240
SfuI	TTCGAA	1 cut(s)	88
SmiMI	CAYNNNNRTG	2 cut(s)	191, 304
Sse9I	AATT	5 cut(s)	47, 77, 137, 377, 661
SsiI	CCGC	5 cut(s)	29, 36, 101, 166, 588
SstI	GAGCTC	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	225, 455
StyI	CCWWGG	1 cut(s)	242
TaiI	ACGT	2 cut(s)	440, 579
TaqI	TCGA	4 cut(s)	53, 82, 88, 651
TasI	AATT	5 cut(s)	47, 77, 137, 377, 661
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	2 cut(s)	7, 656
Tru1I	TTAA	4 cut(s)	57, 66, 416, 525
Tru9I	TTAA	4 cut(s)	57, 66, 416, 525
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	7 cut(s)	172, 254, 274, 277, 442, 507, 518
TspDTI	ATGAA	3 cut(s)	114, 390, 657
TspRI	CASTG	1 cut(s)	273
VspI	ATTAAT	1 cut(s)	57
XapI	RAATTY	1 cut(s)	47
XcmI	CCANNNNNNNNNTGG	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.