Prupe.1G417600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013621
Physical Location & Seq
Forward (+)
36219861 .. 36221750
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G417600.1

Sequence Viewer

Length: 696 bp
ATGGCGTTTCCGGCGTCTATTGCGTCGCCTTCGTCTTCAATCCCCAAATTTCCGATTAATGTCTTTGAACAGAAACCATGCCAACCCAGAAGTTGCTTTCTTTTACATCTCCGTCGCCGACCCTTCTCCTCAAGCTGCATAAAAGCAGTGTCCTCCATGGCACAATTTGGCGAACCCAATAAAGAAAACAAGCAGAAGCAGAAAATTGAAGTCAGTGTTGTGAAGGATAAGCTGTGGGAAGCCATACCCGTCCCAGTGAAAGAGCTTCCATGGAAGAAAGCAGCAGATACAGCTTTGGAGCAGCTGCTTCTTCTTGGGTACAAGGCACTCAAATGGTCCTTTATCAGCTTTGGTGTCCTTAGTTTTTTATCAGATATCATATTTTCTATCTCCAGTAACTATGAATTGATCATGCCCTTTGGTCTCTTTGTTGGGTGCTTCTTGACTGATGTCTTGAAAGAGGGGTTGCAGCAAGTGCTTCCAAGCTCAGAGGAGAGTGGACTTGAAAAGCACTTTTTAGGCATCGGCTGCTTTCTTGCTGCTGTTAAGTTTGTCTCTGCCGGCCTACCAATGCAAGCCCGAGTTTTTGTTCTGCATGTTGCGAATGGCGGGTTCATGCAGGTCTTGTGGCTCTGGAGAGGTTTATTGAACAAAAGAGATGAAGATGCTTCCTTGCCCATGGACGTGAAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.76

Weight (kDa)

9.08

Isoelectric Point (pI)

54.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 610
AciI CCGC 1 cut(s) 609
AcsI RAATTY 1 cut(s) 47
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 1 cut(s) 320
AgsI TTSAA 6 cut(s) 39, 68, 209, 457, 506, 649
AjiI CACGTC 1 cut(s) 685
AluBI AGCT 7 cut(s) 135, 232, 265, 293, 304, 348, 486
AluI AGCT 7 cut(s) 135, 232, 265, 293, 304, 348, 486
Alw26I GTCTC 2 cut(s) 428, 559
Ama87I CYCGRG 1 cut(s) 579
AoxI GGCC 1 cut(s) 562
ApeKI GCWGC 7 cut(s) 135, 281, 301, 304, 469, 528, 539
ApoI RAATTY 1 cut(s) 47
AseI ATTAAT 1 cut(s) 57
AspS9I GGNCC 1 cut(s) 336
AvaI CYCGRG 1 cut(s) 579
AvaII GGWCC 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 27
BbvI GCAGC 7 cut(s) 122, 291, 293, 313, 481, 515, 526
BclI TGATCA 1 cut(s) 408
BcoDI GTCTC 2 cut(s) 428, 559
BfuAI ACCTGC 1 cut(s) 610
BisI GCNGC 7 cut(s) 136, 282, 302, 305, 470, 529, 540
BlsI GCNGC 7 cut(s) 137, 283, 303, 306, 471, 530, 541
Bme18I GGWCC 1 cut(s) 336
BmeT110I CYCGRG 1 cut(s) 579
BmgBI CACGTC 1 cut(s) 685
BmgT120I GGNCC 1 cut(s) 336
BmrI ACTGGG 1 cut(s) 248
BmsI GCATC 2 cut(s) 531, 655
BmuI ACTGGG 1 cut(s) 248
BoxI GACNNNNGTC 1 cut(s) 449
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 2 cut(s) 376, 655
BpuEI CTTGAG 1 cut(s) 115
BsaHI GRCGYC 1 cut(s) 14
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 3 cut(s) 156, 269, 678
Bse118I RCCGGY 1 cut(s) 560
Bse1I ACTGG 2 cut(s) 254, 393
BseDI CCNNGG 3 cut(s) 156, 269, 678
BseMII CTCAG 1 cut(s) 501
BseNI ACTGG 2 cut(s) 254, 393
BseRI GAGGAG 2 cut(s) 118, 506
BseXI GCAGC 7 cut(s) 122, 291, 293, 313, 481, 515, 526
BshFI GGCC 1 cut(s) 564
BsiHKCI CYCGRG 1 cut(s) 579
BsiSI CCGG 2 cut(s) 11, 561
BslFI GGGAC 1 cut(s) 236
BsmAI GTCTC 2 cut(s) 428, 559
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 1 cut(s) 564
Bso31I GGTCTC 1 cut(s) 428
BsoBI CYCGRG 1 cut(s) 579
Bsp143I GATC 1 cut(s) 408
Bsp19I CCATGG 3 cut(s) 156, 269, 678
BspACI CCGC 1 cut(s) 609
BspANI GGCC 1 cut(s) 564
BspCNI CTCAG 1 cut(s) 500
BspMI ACCTGC 1 cut(s) 610
BspTNI GGTCTC 1 cut(s) 428
BsrFI RCCGGY 1 cut(s) 560
BsrI ACTGG 2 cut(s) 254, 393
BssAI RCCGGY 1 cut(s) 560
BssECI CCNNGG 3 cut(s) 156, 269, 678
BssMI GATC 1 cut(s) 408
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 3 cut(s) 156, 269, 678
BstACI GRCGYC 1 cut(s) 14
BstAPI GCANNNNNTGC 2 cut(s) 475, 528
BstC8I GCNNGC 2 cut(s) 562, 576
BstDEI CTNAG 2 cut(s) 359, 487
BstDSI CCRYGG 3 cut(s) 156, 269, 678
BstKTI GATC 1 cut(s) 411
BstMAI GTCTC 2 cut(s) 428, 559
BstMBI GATC 1 cut(s) 408
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 290, 475, 528
BstNSI RCATGY 1 cut(s) 599
BstPAI GACNNNNGTC 1 cut(s) 449
BstV1I GCAGC 7 cut(s) 122, 291, 293, 313, 481, 515, 526
BstV2I GAAGAC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 564
BtgI CCRYGG 3 cut(s) 156, 269, 678
BtrI CACGTC 1 cut(s) 685
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 3 cut(s) 153, 220, 261
BveI ACCTGC 1 cut(s) 610
Cac8I GCNNGC 2 cut(s) 562, 576
Cfr10I RCCGGY 1 cut(s) 560
Cfr13I GGNCC 1 cut(s) 336
CseI GACGC 2 cut(s) 3, 12
Csp6I GTAC 1 cut(s) 319
CviAII CATG 7 cut(s) 78, 157, 270, 412, 596, 616, 679
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 2 cut(s) 359, 487
DpnI GATC 1 cut(s) 410
DpnII GATC 1 cut(s) 408
Eco130I CCWWGG 3 cut(s) 156, 269, 678
Eco31I GGTCTC 1 cut(s) 428
Eco32I GATATC 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 579
EcoRV GATATC 1 cut(s) 376
EcoT14I CCWWGG 3 cut(s) 156, 269, 678
ErhI CCWWGG 3 cut(s) 156, 269, 678
FaeI CATG 7 cut(s) 81, 160, 273, 415, 599, 619, 682
FaqI GGGAC 1 cut(s) 236
FatI CATG 7 cut(s) 77, 156, 269, 411, 595, 615, 678
FauI CCCGC 1 cut(s) 602
FbaI TGATCA 1 cut(s) 408
Fnu4HI GCNGC 7 cut(s) 136, 282, 302, 305, 470, 529, 540
Fsp4HI GCNGC 7 cut(s) 136, 282, 302, 305, 470, 529, 540
GluI GCNGC 7 cut(s) 136, 282, 302, 305, 470, 529, 540
GsuI CTGGAG 2 cut(s) 376, 655
HaeIII GGCC 1 cut(s) 564
HapII CCGG 2 cut(s) 11, 561
HgaI GACGC 2 cut(s) 3, 12
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 7 cut(s) 81, 160, 273, 415, 599, 619, 682
HpaII CCGG 2 cut(s) 11, 561
Hpy166II GTNNAC 1 cut(s) 500
Hpy188I TCNGA 3 cut(s) 54, 373, 490
Hpy188III TCNNGA 3 cut(s) 442, 454, 634
Hpy8I GTNNAC 1 cut(s) 500
Hpy99I CGWCG 2 cut(s) 28, 117
HpyAV CCTTC 3 cut(s) 39, 133, 217
HpyCH4IV ACGT 1 cut(s) 684
HpyCH4V TGCA 5 cut(s) 138, 469, 574, 595, 619
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 290, 475, 528
HpyF3I CTNAG 2 cut(s) 359, 487
HpySE526I ACGT 1 cut(s) 684
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 7 cut(s) 81, 160, 273, 415, 599, 619, 682
KroI GCCGGC 1 cut(s) 560
KroNI GCCGGC 1 cut(s) 562
Ksp22I TGATCA 1 cut(s) 408
Kzo9I GATC 1 cut(s) 408
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 7 cut(s) 24, 100, 267, 406, 574, 605, 619
Lsp1109I GCAGC 7 cut(s) 122, 291, 293, 313, 481, 515, 526
LweI GCATC 2 cut(s) 531, 655
MaeII ACGT 1 cut(s) 684
MaeIII GTNAC 1 cut(s) 395
MalI GATC 1 cut(s) 410
MboI GATC 1 cut(s) 408
MboII GAAGA 4 cut(s) 27, 286, 302, 674
MluCI AATT 4 cut(s) 47, 164, 204, 404
MnlI CCTC 5 cut(s) 139, 163, 454, 484, 632
MroNI GCCGGC 1 cut(s) 560
MseI TTAA 3 cut(s) 57, 546, 694
MslI CAYNNNNRTG 2 cut(s) 331, 683
MspA1I CMGCKG 1 cut(s) 304
MspI CCGG 2 cut(s) 11, 561
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 290, 475, 528
NaeI GCCGGC 1 cut(s) 562
NcoI CCATGG 3 cut(s) 156, 269, 678
NdeII GATC 1 cut(s) 408
NgoMIV GCCGGC 1 cut(s) 560
NlaIII CATG 7 cut(s) 81, 160, 273, 415, 599, 619, 682
NspI RCATGY 1 cut(s) 599
PdiI GCCGGC 1 cut(s) 562
PkrI GCNGC 7 cut(s) 137, 283, 303, 306, 471, 530, 541
PshAI GACNNNNGTC 1 cut(s) 449
PshBI ATTAAT 1 cut(s) 57
PspPI GGNCC 1 cut(s) 336
PvuII CAGCTG 1 cut(s) 304
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
RseI CAYNNNNRTG 2 cut(s) 331, 683
SaqAI TTAA 3 cut(s) 57, 546, 694
SatI GCNGC 7 cut(s) 136, 282, 302, 305, 470, 529, 540
Sau3AI GATC 1 cut(s) 408
Sau96I GGNCC 1 cut(s) 336
SfaNI GCATC 2 cut(s) 531, 655
SinI GGWCC 1 cut(s) 336
SmiMI CAYNNNNRTG 2 cut(s) 331, 683
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
Sse9I AATT 4 cut(s) 47, 164, 204, 404
SsiI CCGC 1 cut(s) 609
StyI CCWWGG 3 cut(s) 156, 269, 678
TaiI ACGT 1 cut(s) 687
TasI AATT 4 cut(s) 47, 164, 204, 404
Tru1I TTAA 3 cut(s) 57, 546, 694
Tru9I TTAA 3 cut(s) 57, 546, 694
TscAI CASTG 3 cut(s) 153, 220, 261
TseI GCWGC 7 cut(s) 135, 281, 301, 304, 469, 528, 539
TspDTI ATGAA 3 cut(s) 417, 604, 675
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 3 cut(s) 153, 220, 261
VpaK11BI GGWCC 1 cut(s) 336
VspI ATTAAT 1 cut(s) 57
XapI RAATTY 1 cut(s) 47
XceI RCATGY 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.