Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0013621

Physical Location & Seq

Genomic Coordinates Reverse (-)

66890022 .. 66890812

Gene Structure 791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG492400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCGTTTCCAGCGTCTCTTTCATCGCCTTCGTCTTCAACCCCAAAATTTCAGATTAATCTCTCTAAACCCAAACCCTCTCAACCCCAGAAATGCTTGATCTTACGTCTCCGTCACAAACCCTTCCAGACAAGTTGTACCAAAGTAGTATCAATGGCCCAATTCGGTGAACCAAATAAGGGTCACAATCCGGGTCTGCAAATCAAGGTTGTGAAGGAGAAGCTTATGGAAACCATACCTGACCCAGTTAAAGAGCTTCCATGGAAGAGAGCAGCAGACATTGCTCTGAAGCAGCTGCTTGTTCTTGGGGAGAAGGCACTCAAATGGTGCCTCATTGCTTTCTTTGTGTTGAGCTTCTTTTCAGATGTCATACTTTCGATCTCCAAGAACAGAGAACTGGTTATACCTTTTGGTCTCTTTGTTGGGTGCTTAGTTACCGACATTTTGAAAGAGACATTGCAGCAAGTGCTTCCCATTTCCGAGGAGAAGGGGTTCGAAAAGCACCTTATCGGAATCGGCTGCCTCTTTGCTGCTGTTAAGTTCATCTCTTATGGTCTCCCAGTACCGGCGCAGGTGTTTCTTCTAAATGTGGCAAATGGCGGGTTCCTGCAAGTTTTGTGGCTCTGGAGAGGTTTGTTGAACAAAAGTGACGAAGAAGATGATGTTGGTAATAGTACCGATGCTTCATTGGTCATGGATGGGAAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

26.12

Weight (kDa)

9.06

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013621)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32450
malus_domestica	MD08G1076300.v1.1 MD15G1063400.v1.1
prunus_persica	Prupe.1G417600_v2.0.a1
pyrus_communis	pycom15g06020
rosa_chinensis	RchiOBHm_Chr6g0310221
rosa_laevigata	RLG00000010498
rosa_multiflora	Rmu_sc0001772.1_g000051 Rmu_sc0002348.1_g000028
rosa_roxburghii	Rroxscaffold_7G00158730 Rroxscaffold_7G00158740
rosa_rugosa	Rorug06G0378300
rosa_samantha	Rh6AG492400 Rh6BG502100 Rh6CG507000 Rh6DG137000 Rh6DG493200
rosa_wichuraiana	Rw6G042850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	562
Acc36I	ACCTGC	1 cut(s)	562
AccB1I	GGYRCC	1 cut(s)	327
AciI	CCGC	1 cut(s)	600
AcsI	RAATTY	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	3 cut(s)	139, 564, 676
AfiI	CCNNNNNNNGG	2 cut(s)	179, 565
AgsI	TTSAA	3 cut(s)	39, 448, 640
AjuI	GAANNNNNNNTTGG	2 cut(s)	648, 680
AloI	GAACNNNNNNTCC	2 cut(s)	476, 508
AluBI	AGCT	4 cut(s)	223, 256, 295, 354
AluI	AGCT	4 cut(s)	223, 256, 295, 354
Alw26I	GTCTC	5 cut(s)	21, 113, 419, 446, 560
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	6 cut(s)	272, 292, 295, 460, 519, 530
ApoI	RAATTY	1 cut(s)	47
AseI	ATTAAT	1 cut(s)	57
Asp700I	GAANNNNTTC	1 cut(s)	491
AspLEI	GCGC	1 cut(s)	571
AspS9I	GGNCC	1 cut(s)	157
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	179
AsuII	TTCGAA	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	327
BarI	GAAGNNNNNNTAC	2 cut(s)	667, 699
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	6 cut(s)	282, 284, 304, 472, 506, 517
BccI	CCATC	1 cut(s)	692
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	5 cut(s)	21, 113, 419, 446, 560
BfuAI	ACCTGC	1 cut(s)	562
BisI	GCNGC	6 cut(s)	273, 293, 296, 461, 520, 531
BlsI	GCNGC	6 cut(s)	274, 294, 297, 462, 521, 532
Bme1390I	CCNGG	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	329, 605
BmrFI	CCNGG	1 cut(s)	192
BmrI	ACTGGG	2 cut(s)	239, 554
BmsI	GCATC	1 cut(s)	670
BmuI	ACTGGG	2 cut(s)	239, 554
BpiI	GAAGAC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	646
Bpu14I	TTCGAA	1 cut(s)	495
BpuMI	CCSGG	1 cut(s)	192
BsaI	GGTCTC	2 cut(s)	419, 560
BsaJI	CCNNGG	2 cut(s)	260, 480
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 565
Bse118I	RCCGGY	1 cut(s)	565
Bse1I	ACTGG	3 cut(s)	245, 402, 560
Bse3DI	GCAATG	3 cut(s)	279, 333, 455
BseDI	CCNNGG	2 cut(s)	260, 480
BseGI	GGATG	1 cut(s)	703
BseLI	CCNNNNNNNGG	2 cut(s)	179, 565
BseMI	GCAATG	3 cut(s)	279, 333, 455
BseNI	ACTGG	3 cut(s)	245, 402, 560
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	6 cut(s)	282, 284, 304, 472, 506, 517
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	327
BsiSI	CCGG	2 cut(s)	191, 566
BslI	CCNNNNNNNGG	2 cut(s)	179, 565
BsmAI	GTCTC	5 cut(s)	21, 113, 419, 446, 560
BsmBI	CGTCTC	2 cut(s)	21, 113
BsnI	GGCC	1 cut(s)	158
Bso31I	GGTCTC	2 cut(s)	419, 560
Bsp119I	TTCGAA	1 cut(s)	495
Bsp143I	GATC	2 cut(s)	99, 378
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	1 cut(s)	600
BspANI	GGCC	1 cut(s)	158
BspLI	GGNNCC	2 cut(s)	329, 605
BspMI	ACCTGC	1 cut(s)	562
BspT104I	TTCGAA	1 cut(s)	495
BspT107I	GGYRCC	1 cut(s)	327
BspTNI	GGTCTC	2 cut(s)	419, 560
BsrDI	GCAATG	3 cut(s)	279, 333, 455
BsrFI	RCCGGY	1 cut(s)	565
BsrI	ACTGG	3 cut(s)	245, 402, 560
BssAI	RCCGGY	1 cut(s)	565
BssECI	CCNNGG	2 cut(s)	260, 480
BssMI	GATC	2 cut(s)	99, 378
BssT1I	CCWWGG	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	260
BstAPI	GCANNNNNTGC	2 cut(s)	281, 466
BstBI	TTCGAA	1 cut(s)	495
BstDEI	CTNAG	1 cut(s)	430
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	703
BstHHI	GCGC	1 cut(s)	571
BstKTI	GATC	2 cut(s)	102, 381
BstMAI	GTCTC	5 cut(s)	21, 113, 419, 446, 560
BstMBI	GATC	2 cut(s)	99, 378
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 281, 466
BstSCI	CCNGG	1 cut(s)	190
BstV1I	GCAGC	6 cut(s)	282, 284, 304, 472, 506, 517
BstV2I	GAAGAC	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	158
BtgI	CCRYGG	1 cut(s)	260
BtgZI	GCGATG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	703
BveI	ACCTGC	1 cut(s)	562
CfoI	GCGC	1 cut(s)	571
Cfr10I	RCCGGY	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	157
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	3 cut(s)	138, 563, 675
CspCI	CAANNNNNGTGG	2 cut(s)	599, 634
CviAII	CATG	2 cut(s)	261, 694
CviJI	RGCY	7 cut(s)	158, 223, 256, 295, 354, 519, 622
CviKI_1	RGCY	7 cut(s)	158, 223, 256, 295, 354, 519, 622
CviQI	GTAC	3 cut(s)	138, 563, 675
DdeI	CTNAG	1 cut(s)	430
DpnI	GATC	2 cut(s)	101, 380
DpnII	GATC	2 cut(s)	99, 378
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	260
Eco31I	GGTCTC	2 cut(s)	419, 560
Eco57I	CTGAAG	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
Esp3I	CGTCTC	2 cut(s)	21, 113
FaeI	CATG	2 cut(s)	264, 697
FaiI	YATR	7 cut(s)	227, 236, 262, 371, 404, 552, 695
FatI	CATG	2 cut(s)	260, 693
FauI	CCCGC	1 cut(s)	593
Fnu4HI	GCNGC	6 cut(s)	273, 293, 296, 461, 520, 531
Fsp4HI	GCNGC	6 cut(s)	273, 293, 296, 461, 520, 531
GlaI	GCGC	1 cut(s)	570
GluI	GCNGC	6 cut(s)	273, 293, 296, 461, 520, 531
GsuI	CTGGAG	1 cut(s)	646
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	2 cut(s)	191, 566
HgaI	GACGC	1 cut(s)	3
HhaI	GCGC	1 cut(s)	571
Hin1II	CATG	2 cut(s)	264, 697
Hin6I	GCGC	1 cut(s)	569
HinP1I	GCGC	1 cut(s)	569
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	1 cut(s)	513
HpaII	CCGG	2 cut(s)	191, 566
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	5 cut(s)	54, 288, 364, 481, 512
Hpy188III	TCNNGA	2 cut(s)	127, 625
Hpy8I	GTNNAC	1 cut(s)	170
HpyAV	CCTTC	5 cut(s)	39, 133, 208, 307, 481
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	3 cut(s)	199, 460, 610
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 281, 466
HpyF3I	CTNAG	1 cut(s)	430
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	2 cut(s)	264, 697
HspAI	GCGC	1 cut(s)	569
Kzo9I	GATC	2 cut(s)	99, 378
Lsp1109I	GCAGC	6 cut(s)	282, 284, 304, 472, 506, 517
LweI	GCATC	1 cut(s)	670
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	4 cut(s)	113, 182, 433, 647
MalI	GATC	2 cut(s)	101, 380
MboI	GATC	2 cut(s)	99, 378
MboII	GAAGA	5 cut(s)	27, 277, 572, 665, 668
MluCI	AATT	2 cut(s)	47, 161
MnlI	CCTC	5 cut(s)	88, 341, 475, 533, 623
MroXI	GAANNNNTTC	1 cut(s)	491
MseI	TTAA	3 cut(s)	57, 249, 537
MslI	CAYNNNNRTG	1 cut(s)	322
MspA1I	CMGCKG	1 cut(s)	295
MspI	CCGG	2 cut(s)	191, 566
MspR9I	CCNGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	3 cut(s)	11, 281, 466
NciI	CCSGG	1 cut(s)	192
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	2 cut(s)	99, 378
NlaIII	CATG	2 cut(s)	264, 697
NlaIV	GGNNCC	2 cut(s)	329, 605
NmuCI	GTSAC	3 cut(s)	113, 182, 647
NspV	TTCGAA	1 cut(s)	495
PaqCI	CACCTGC	1 cut(s)	562
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	1 cut(s)	513
PkrI	GCNGC	6 cut(s)	274, 294, 297, 462, 521, 532
PshBI	ATTAAT	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	329, 605
PspPI	GGNCC	1 cut(s)	157
PsrI	GAACNNNNNNTAC	2 cut(s)	387, 419
PvuII	CAGCTG	1 cut(s)	295
RsaI	GTAC	3 cut(s)	139, 564, 676
RsaNI	GTAC	3 cut(s)	138, 563, 675
RseI	CAYNNNNRTG	1 cut(s)	322
SaqAI	TTAA	3 cut(s)	57, 249, 537
SatI	GCNGC	6 cut(s)	273, 293, 296, 461, 520, 531
Sau3AI	GATC	2 cut(s)	99, 378
Sau96I	GGNCC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	192
SfaNI	GCATC	1 cut(s)	670
SfuI	TTCGAA	1 cut(s)	495
SmiMI	CAYNNNNRTG	1 cut(s)	322
Sse9I	AATT	2 cut(s)	47, 161
SsiI	CCGC	1 cut(s)	600
StyD4I	CCNGG	1 cut(s)	190
StyI	CCWWGG	1 cut(s)	260
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	2 cut(s)	377, 495
TasI	AATT	2 cut(s)	47, 161
TfiI	GAWTC	1 cut(s)	513
Tru1I	TTAA	3 cut(s)	57, 249, 537
Tru9I	TTAA	3 cut(s)	57, 249, 537
TseFI	GTSAC	3 cut(s)	113, 182, 647
TseI	GCWGC	6 cut(s)	272, 292, 295, 460, 519, 530
Tsp45I	GTSAC	3 cut(s)	113, 182, 647
TspDTI	ATGAA	3 cut(s)	12, 532, 675
TspGWI	ACGGA	1 cut(s)	101
VspI	ATTAAT	1 cut(s)	57
XapI	RAATTY	1 cut(s)	47
XmnI	GAANNNNTTC	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.