RLG00000010498

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013621
Physical Location & Seq
Forward (+)
2138075 .. 2138865
791 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010498

Sequence Viewer

Length: 711 bp
ATGGCGTTTCCAGCGTCTCTTTCATCGCCTTCGTCTTCAACCCCAAAATTTCCGATTAATCTCTCTAAACCCAAACCCTCTCAACCCCAGAAATGCTTAATCTTACGTCTCCGTCACAAACCCTTCCAGACAAGTTGTACCAAAGTAGTATCAATGGCCGAATTCGGTGAACCAAATAAGGGTCACAATCCGGGTCTGCAAATCAAGGTTGTGAAGGAGAAGCTTATGGAAACCATACCTGACCCAGTTAAAGAGCTTCCATGGAAGAGAGCAGCAGACATTGCTCTGAAGCAGCTGCTTTTTCTTGGGGAGAAGGCACTCAAATGGTGCCTCGTTGCTTTCTTTGTGTTGAGCTTCTTTTCAGATGTCATATTTTCGATCTCCAAGAACAGAGAACTGGTTATACCTTTTGGTCTCTTTGTTGGGTGCTTAGTTACCGACGTTTTGAAAGAGACATTGCAGCAAGTGCTTCCCATTTCAGAGGAGAAGGGATTCGAAAAGCACCTTATCGGAATCGGCTGCCTCTTTGTTGCTGTTAAGTTCATCTCTTCTGGTCTCCCAGTACCGGCGCAGGTGTTTCTTCTCAATGTGGCAAATGGAGCGTTCCTGCAAGTTTTGTGGCTCTGGAGAGGTTTGTTGAACAAAAGTGACGAAGAAGATGATGTTGGTAATAGTACCGATGCTTCATTGGCCATGGATGGGAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.08

Weight (kDa)

8.93

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 562
Acc36I ACCTGC 1 cut(s) 562
AccB1I GGYRCC 1 cut(s) 327
AcoI YGGCCR 2 cut(s) 156, 690
AcsI RAATTY 2 cut(s) 47, 161
AcuI CTGAAG 1 cut(s) 308
AfaI GTAC 3 cut(s) 139, 564, 676
AfiI CCNNNNNNNGG 3 cut(s) 179, 565, 699
AgsI TTSAA 3 cut(s) 39, 448, 640
AjuI GAANNNNNNNTTGG 2 cut(s) 648, 680
AluBI AGCT 4 cut(s) 223, 256, 295, 354
AluI AGCT 4 cut(s) 223, 256, 295, 354
Alw26I GTCTC 5 cut(s) 21, 113, 419, 446, 560
AoxI GGCC 2 cut(s) 156, 690
ApeKI GCWGC 5 cut(s) 272, 292, 295, 460, 519
ApoI RAATTY 2 cut(s) 47, 161
AseI ATTAAT 1 cut(s) 57
Asp700I GAANNNNTTC 1 cut(s) 491
AspLEI GCGC 1 cut(s) 571
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 179
AsuII TTCGAA 1 cut(s) 495
BalI TGGCCA 1 cut(s) 692
BanI GGYRCC 1 cut(s) 327
BarI GAAGNNNNNNTAC 2 cut(s) 667, 699
BbsI GAAGAC 1 cut(s) 27
BbvI GCAGC 5 cut(s) 282, 284, 304, 472, 506
BccI CCATC 1 cut(s) 692
BcnI CCSGG 1 cut(s) 192
BcoDI GTCTC 5 cut(s) 21, 113, 419, 446, 560
BfuAI ACCTGC 1 cut(s) 562
BisI GCNGC 5 cut(s) 273, 293, 296, 461, 520
BlsI GCNGC 5 cut(s) 274, 294, 297, 462, 521
Bme1390I CCNGG 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 329
BmrFI CCNGG 1 cut(s) 192
BmrI ACTGGG 2 cut(s) 239, 554
BmsI GCATC 1 cut(s) 670
BmuI ACTGGG 2 cut(s) 239, 554
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 646
Bpu14I TTCGAA 1 cut(s) 495
BpuMI CCSGG 1 cut(s) 192
BsaI GGTCTC 2 cut(s) 419, 560
BsaJI CCNNGG 2 cut(s) 260, 693
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 565, 699
Bse118I RCCGGY 1 cut(s) 565
Bse1I ACTGG 3 cut(s) 245, 402, 560
Bse3DI GCAATG 2 cut(s) 279, 455
BseDI CCNNGG 2 cut(s) 260, 693
BseGI GGATG 1 cut(s) 703
BseLI CCNNNNNNNGG 3 cut(s) 179, 565, 699
BseMI GCAATG 2 cut(s) 279, 455
BseNI ACTGG 3 cut(s) 245, 402, 560
BseRI GAGGAG 1 cut(s) 497
BseXI GCAGC 5 cut(s) 282, 284, 304, 472, 506
BshFI GGCC 2 cut(s) 158, 692
BshNI GGYRCC 1 cut(s) 327
BsiSI CCGG 2 cut(s) 191, 566
BslI CCNNNNNNNGG 3 cut(s) 179, 565, 699
BsmAI GTCTC 5 cut(s) 21, 113, 419, 446, 560
BsmBI CGTCTC 2 cut(s) 21, 113
BsnI GGCC 2 cut(s) 158, 692
Bso31I GGTCTC 2 cut(s) 419, 560
Bsp119I TTCGAA 1 cut(s) 495
Bsp143I GATC 1 cut(s) 378
Bsp19I CCATGG 2 cut(s) 260, 693
BspANI GGCC 2 cut(s) 158, 692
BspLI GGNNCC 1 cut(s) 329
BspMI ACCTGC 1 cut(s) 562
BspT104I TTCGAA 1 cut(s) 495
BspT107I GGYRCC 1 cut(s) 327
BspTNI GGTCTC 2 cut(s) 419, 560
BsrDI GCAATG 2 cut(s) 279, 455
BsrFI RCCGGY 1 cut(s) 565
BsrI ACTGG 3 cut(s) 245, 402, 560
BssAI RCCGGY 1 cut(s) 565
BssECI CCNNGG 2 cut(s) 260, 693
BssMI GATC 1 cut(s) 378
BssT1I CCWWGG 2 cut(s) 260, 693
Bst6I CTCTTC 2 cut(s) 260, 553
BstAPI GCANNNNNTGC 2 cut(s) 281, 466
BstBI TTCGAA 1 cut(s) 495
BstDEI CTNAG 1 cut(s) 430
BstDSI CCRYGG 2 cut(s) 260, 693
BstF5I GGATG 1 cut(s) 703
BstHHI GCGC 1 cut(s) 571
BstKTI GATC 1 cut(s) 381
BstMAI GTCTC 5 cut(s) 21, 113, 419, 446, 560
BstMBI GATC 1 cut(s) 378
BstMWI GCNNNNNNNGC 5 cut(s) 11, 281, 466, 599, 689
BstSCI CCNGG 1 cut(s) 190
BstV1I GCAGC 5 cut(s) 282, 284, 304, 472, 506
BstV2I GAAGAC 1 cut(s) 27
BsuRI GGCC 2 cut(s) 158, 692
BtgI CCRYGG 2 cut(s) 260, 693
BtgZI GCGATG 1 cut(s) 9
BtsCI GGATG 1 cut(s) 703
BveI ACCTGC 1 cut(s) 562
CfoI GCGC 1 cut(s) 571
Cfr10I RCCGGY 1 cut(s) 565
CseI GACGC 1 cut(s) 3
Csp6I GTAC 3 cut(s) 138, 563, 675
CspCI CAANNNNNGTGG 2 cut(s) 599, 634
CviAII CATG 2 cut(s) 261, 694
CviJI RGCY 8 cut(s) 158, 223, 256, 295, 354, 519, 622, 692
CviKI_1 RGCY 8 cut(s) 158, 223, 256, 295, 354, 519, 622, 692
CviQI GTAC 3 cut(s) 138, 563, 675
DdeI CTNAG 1 cut(s) 430
DpnI GATC 1 cut(s) 380
DpnII GATC 1 cut(s) 378
EaeI YGGCCR 2 cut(s) 156, 690
Eam1104I CTCTTC 2 cut(s) 260, 553
EarI CTCTTC 2 cut(s) 260, 553
Eco130I CCWWGG 2 cut(s) 260, 693
Eco31I GGTCTC 2 cut(s) 419, 560
Eco57I CTGAAG 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 161
EcoT14I CCWWGG 2 cut(s) 260, 693
ErhI CCWWGG 2 cut(s) 260, 693
Esp3I CGTCTC 2 cut(s) 21, 113
FaeI CATG 2 cut(s) 264, 697
FaiI YATR 6 cut(s) 227, 236, 262, 371, 404, 695
FatI CATG 2 cut(s) 260, 693
Fnu4HI GCNGC 5 cut(s) 273, 293, 296, 461, 520
Fsp4HI GCNGC 5 cut(s) 273, 293, 296, 461, 520
GlaI GCGC 1 cut(s) 570
GluI GCNGC 5 cut(s) 273, 293, 296, 461, 520
GsuI CTGGAG 1 cut(s) 646
HaeIII GGCC 2 cut(s) 158, 692
HapII CCGG 2 cut(s) 191, 566
HgaI GACGC 1 cut(s) 3
HhaI GCGC 1 cut(s) 571
Hin1II CATG 2 cut(s) 264, 697
Hin6I GCGC 1 cut(s) 569
HinP1I GCGC 1 cut(s) 569
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 2 cut(s) 492, 513
HpaII CCGG 2 cut(s) 191, 566
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 5 cut(s) 54, 288, 364, 481, 512
Hpy188III TCNNGA 2 cut(s) 127, 625
Hpy8I GTNNAC 1 cut(s) 170
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 5 cut(s) 39, 133, 208, 307, 481
HpyCH4IV ACGT 2 cut(s) 106, 441
HpyCH4V TGCA 3 cut(s) 199, 460, 610
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 281, 466, 599, 689
HpyF3I CTNAG 1 cut(s) 430
HpySE526I ACGT 2 cut(s) 106, 441
Hsp92II CATG 2 cut(s) 264, 697
HspAI GCGC 1 cut(s) 569
Kzo9I GATC 1 cut(s) 378
LmnI GCTCC 1 cut(s) 599
Lsp1109I GCAGC 5 cut(s) 282, 284, 304, 472, 506
LweI GCATC 1 cut(s) 670
MaeII ACGT 2 cut(s) 106, 441
MaeIII GTNAC 4 cut(s) 113, 182, 433, 647
MalI GATC 1 cut(s) 380
MboI GATC 1 cut(s) 378
MboII GAAGA 6 cut(s) 27, 277, 540, 572, 665, 668
MlsI TGGCCA 1 cut(s) 692
MluCI AATT 2 cut(s) 47, 161
MluNI TGGCCA 1 cut(s) 692
MnlI CCTC 5 cut(s) 88, 341, 475, 533, 623
Mox20I TGGCCA 1 cut(s) 692
MroXI GAANNNNTTC 1 cut(s) 491
MscI TGGCCA 1 cut(s) 692
MseI TTAA 4 cut(s) 57, 98, 249, 537
MslI CAYNNNNRTG 1 cut(s) 322
Msp20I TGGCCA 1 cut(s) 692
MspA1I CMGCKG 1 cut(s) 295
MspI CCGG 2 cut(s) 191, 566
MspR9I CCNGG 1 cut(s) 192
MwoI GCNNNNNNNGC 5 cut(s) 11, 281, 466, 599, 689
NciI CCSGG 1 cut(s) 192
NcoI CCATGG 2 cut(s) 260, 693
NdeII GATC 1 cut(s) 378
NlaIII CATG 2 cut(s) 264, 697
NlaIV GGNNCC 1 cut(s) 329
NmuCI GTSAC 3 cut(s) 113, 182, 647
NspV TTCGAA 1 cut(s) 495
PaqCI CACCTGC 1 cut(s) 562
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 2 cut(s) 492, 513
PkrI GCNGC 5 cut(s) 274, 294, 297, 462, 521
PshBI ATTAAT 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 329
PsrI GAACNNNNNNTAC 2 cut(s) 387, 419
PvuII CAGCTG 1 cut(s) 295
RsaI GTAC 3 cut(s) 139, 564, 676
RsaNI GTAC 3 cut(s) 138, 563, 675
RseI CAYNNNNRTG 1 cut(s) 322
SaqAI TTAA 4 cut(s) 57, 98, 249, 537
SatI GCNGC 5 cut(s) 273, 293, 296, 461, 520
Sau3AI GATC 1 cut(s) 378
ScrFI CCNGG 1 cut(s) 192
SfaNI GCATC 1 cut(s) 670
SfuI TTCGAA 1 cut(s) 495
SmiMI CAYNNNNRTG 1 cut(s) 322
Sse9I AATT 2 cut(s) 47, 161
StyD4I CCNGG 1 cut(s) 190
StyI CCWWGG 2 cut(s) 260, 693
TaiI ACGT 2 cut(s) 109, 444
TaqI TCGA 2 cut(s) 377, 495
TasI AATT 2 cut(s) 47, 161
TfiI GAWTC 2 cut(s) 492, 513
Tru1I TTAA 4 cut(s) 57, 98, 249, 537
Tru9I TTAA 4 cut(s) 57, 98, 249, 537
TseFI GTSAC 3 cut(s) 113, 182, 647
TseI GCWGC 5 cut(s) 272, 292, 295, 460, 519
Tsp45I GTSAC 3 cut(s) 113, 182, 647
TspDTI ATGAA 3 cut(s) 12, 532, 675
TspGWI ACGGA 1 cut(s) 101
VspI ATTAAT 1 cut(s) 57
XapI RAATTY 2 cut(s) 47, 161
XmnI GAANNNNTTC 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.