Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012580

Physical Location & Seq

Genomic Coordinates Reverse (-)

24956568 .. 24959065

Gene Structure 2498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g33190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCATCCTTCCATGGATGACGATCATTTCTTAACCACCGAATTTTCTTGCCAAGAAAGTCCTGCATTCTTGGCTAGTAACTCAGAGCTGGTCGATGAAAACACTTCCCGTAATACCATTGACATCTACCATGATCCTGCATTGCAAGAAGAGCATGTCAGAGTTTTACTTGGTAAAGAGATTGATTTTGGAGTCAAAAATGATGATCAAGGATGTGTCAAATTGATTAAGTTAAGAGATGACCGCTCAGAAGCTATTACATGGATTCTCAGAAACAGAGCCGTTCATGGATTTCAATTCCGAACAGCATTTTTATCCATTACATACTTTGATCAGTTCATTTCCAAGCGCTCCTTCAAGGGCGATCAAACAACTTGGCTTAGAACACTTTCTGTGGCTTGCTTATCTTTGGCTGCAAAAATGGAGGAGCAAAGAAATCCCCTACTATCAGAGTATAAAGTCGAAGATTGCATAATTGAAAGGAGATGGATTAGCCAAATGGAGCTTGCGGTATTGTCAACATTGGAATGGAGGATGGATCCTATAACTCCTTTTGCTTTTATTGATTACTTCATCACAAAGATGCAGTTCAACAAGGAATATCCACCAGAAACAAAATACGACATCATTGAAGGGTTCCTCCTCTATCTTACCCGAGTGATCAATTTAGTGCAGCATAGACCATCTGTTTTAGCAGCTGCTGCCACCATAATGGCATATGATCACCAATTAACGAGAGCAGGACTGGAAGCGAAGATTAAGTCCTTCCCAAATTTGAAGTTTCTAAAGATTGAAGATGTGTGTTCAATCTACAAAATCTTGCAGGAAAAGGAAGATAATGGGAAGTCTACGCGGCCACCGGATTTCACACCGGCCGAGAGTACAGGAAGTGATTCAGCTAGAGAAACTGTGACCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

307

Amino Acids

35.29

Weight (kDa)

5.29

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	77 - 179	7e-18	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012580)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33190
malus_domestica	MD08G1085300.v1.1 MD08G1085700.v1.1 MD15G1070900.v1.1
prunus_persica	Prupe.1G423600_v2.0.a1
pyrus_communis	pycom08g07030 pycom15g06670
rosa_chinensis	RchiOBHm_Chr6g0309481
rosa_laevigata	RLG00000010562
rosa_multiflora	Rmu_sc0001212.1_g000003 Rmu_sc0007283.1_g000002 Rmu_sc0022500.1_g000003
rosa_roxburghii	Rroxscaffold_7G00159370
rosa_rugosa	Rorug06G0372300
rosa_samantha	Rh6AG485500 Rh6BG494900 Rh6CG499900 Rh6DG485900
rosa_wichuraiana	Rw6G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	246
AccI	GTMKAC	1 cut(s)	848
AccII	CGCG	1 cut(s)	853
AciI	CCGC	3 cut(s)	244, 509, 853
AclWI	GGATC	3 cut(s)	128, 533, 546
AcoI	YGGCCR	2 cut(s)	854, 873
AcsI	RAATTY	2 cut(s)	41, 772
AfaI	GTAC	1 cut(s)	883
AfeI	AGCGCT	1 cut(s)	350
AgsI	TTSAA	8 cut(s)	296, 358, 479, 592, 632, 778, 794, 807
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	6 cut(s)	88, 254, 505, 698, 899, 918
AluI	AGCT	6 cut(s)	88, 254, 505, 698, 899, 918
AlwI	GGATC	3 cut(s)	128, 533, 546
AlwNI	CAGNNNCTG	1 cut(s)	701
Ama87I	CYCGRG	1 cut(s)	654
Aor51HI	AGCGCT	1 cut(s)	350
AoxI	GGCC	2 cut(s)	854, 873
ApeKI	GCWGC	5 cut(s)	413, 673, 695, 698, 701
ApoI	RAATTY	2 cut(s)	41, 772
ArsI	GACNNNNNNTTYG	2 cut(s)	746, 778
Asp700I	GAANNNNTTC	2 cut(s)	388, 892
AspLEI	GCGC	1 cut(s)	351
AsuHPI	GGTGA	1 cut(s)	716
AvaI	CYCGRG	1 cut(s)	654
BamHI	GGATCC	1 cut(s)	538
BbvI	GCAGC	5 cut(s)	400, 685, 685, 688, 707
BccI	CCATC	3 cut(s)	480, 529, 691
BceAI	ACGGC	1 cut(s)	266
BclI	TGATCA	4 cut(s)	205, 331, 660, 721
BfaI	CTAG	3 cut(s)	75, 900, 919
BfoI	RGCGCY	1 cut(s)	352
BisI	GCNGC	6 cut(s)	414, 674, 696, 699, 702, 854
BlsI	GCNGC	6 cut(s)	415, 675, 697, 700, 703, 855
BmeT110I	CYCGRG	1 cut(s)	654
BmiI	GGNNCC	2 cut(s)	540, 638
BmsI	GCATC	2 cut(s)	13, 573
BsaBI	GATNNNNATC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	12
BsaWI	WCCGGW	1 cut(s)	859
Bse118I	RCCGGY	1 cut(s)	871
Bse1I	ACTGG	1 cut(s)	750
Bse3DI	GCAATG	1 cut(s)	140
Bse8I	GATNNNNATC	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	4 cut(s)	4, 22, 218, 540
BseJI	GATNNNNATC	1 cut(s)	21
BseMI	GCAATG	1 cut(s)	140
BseMII	CTCAG	3 cut(s)	96, 261, 283
BseNI	ACTGG	1 cut(s)	750
BseRI	GAGGAG	2 cut(s)	440, 632
BseX3I	CGGCCG	1 cut(s)	873
BseXI	GCAGC	5 cut(s)	400, 685, 685, 688, 707
BsgI	GTGCAG	1 cut(s)	692
Bsh1236I	CGCG	1 cut(s)	853
Bsh1285I	CGRYCG	1 cut(s)	876
BshFI	GGCC	2 cut(s)	856, 875
BsiEI	CGRYCG	1 cut(s)	876
BsiHKCI	CYCGRG	1 cut(s)	654
BsiSI	CCGG	2 cut(s)	860, 872
BsmI	GAATGC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	856, 875
BsoBI	CYCGRG	1 cut(s)	654
Bsp143I	GATC	8 cut(s)	22, 133, 205, 331, 364, 538, 660, 721
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	3 cut(s)	244, 509, 853
BspANI	GGCC	2 cut(s)	856, 875
BspCNI	CTCAG	3 cut(s)	95, 260, 282
BspFNI	CGCG	1 cut(s)	853
BspLI	GGNNCC	2 cut(s)	540, 638
BspPI	GGATC	3 cut(s)	128, 533, 546
BspQI	GCTCTTC	1 cut(s)	144
BsrBI	CCGCTC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	871
BsrI	ACTGG	1 cut(s)	750
BssAI	RCCGGY	1 cut(s)	871
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	8 cut(s)	22, 133, 205, 331, 364, 538, 660, 721
BssT1I	CCWWGG	1 cut(s)	12
Bst4CI	ACNGT	1 cut(s)	910
Bst6I	CTCTTC	1 cut(s)	144
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstC8I	GCNNGC	2 cut(s)	400, 507
BstDEI	CTNAG	4 cut(s)	82, 247, 269, 380
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	4 cut(s)	4, 22, 218, 540
BstFNI	CGCG	1 cut(s)	853
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	8 cut(s)	25, 136, 208, 334, 367, 541, 663, 724
BstMBI	GATC	8 cut(s)	22, 133, 205, 331, 364, 538, 660, 721
BstMCI	CGRYCG	1 cut(s)	876
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 151, 701
BstNSI	RCATGY	1 cut(s)	158
BstUI	CGCG	1 cut(s)	853
BstV1I	GCAGC	5 cut(s)	400, 685, 685, 688, 707
BstX2I	RGATCY	1 cut(s)	538
BstXI	CCANNNNNNTGG	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	538
BstZI	CGGCCG	1 cut(s)	873
BsuRI	GGCC	2 cut(s)	856, 875
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	4 cut(s)	4, 22, 218, 540
Cac8I	GCNNGC	2 cut(s)	400, 507
CaiI	CAGNNNCTG	1 cut(s)	701
CfoI	GCGC	1 cut(s)	351
Cfr10I	RCCGGY	1 cut(s)	871
Csp6I	GTAC	1 cut(s)	882
CviAII	CATG	5 cut(s)	13, 131, 155, 261, 287
CviQI	GTAC	1 cut(s)	882
DdeI	CTNAG	4 cut(s)	82, 247, 269, 380
DpnI	GATC	8 cut(s)	24, 135, 207, 333, 366, 540, 662, 723
DpnII	GATC	8 cut(s)	22, 133, 205, 331, 364, 538, 660, 721
EaeI	YGGCCR	2 cut(s)	854, 873
EagI	CGGCCG	1 cut(s)	873
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
EclXI	CGGCCG	1 cut(s)	873
Eco130I	CCWWGG	1 cut(s)	12
Eco47III	AGCGCT	1 cut(s)	350
Eco52I	CGGCCG	1 cut(s)	873
Eco88I	CYCGRG	1 cut(s)	654
EcoT14I	CCWWGG	1 cut(s)	12
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	5 cut(s)	16, 134, 158, 264, 290
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	5 cut(s)	12, 130, 154, 260, 286
FauNDI	CATATG	1 cut(s)	718
FbaI	TGATCA	4 cut(s)	205, 331, 660, 721
FblI	GTMKAC	1 cut(s)	848
Fnu4HI	GCNGC	6 cut(s)	414, 674, 696, 699, 702, 854
FokI	GGATG	3 cut(s)	29, 225, 547
Fsp4HI	GCNGC	6 cut(s)	414, 674, 696, 699, 702, 854
FspBI	CTAG	3 cut(s)	75, 900, 919
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	6 cut(s)	414, 674, 696, 699, 702, 854
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	2 cut(s)	856, 875
HapII	CCGG	2 cut(s)	860, 872
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	5 cut(s)	16, 134, 158, 264, 290
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HinfI	GANTC	3 cut(s)	192, 265, 893
HpaII	CCGG	2 cut(s)	860, 872
HphI	GGTGA	1 cut(s)	716
Hpy166II	GTNNAC	2 cut(s)	519, 849
Hpy188I	TCNGA	6 cut(s)	85, 161, 250, 272, 302, 451
Hpy8I	GTNNAC	2 cut(s)	519, 849
HpyAV	CCTTC	4 cut(s)	18, 364, 626, 775
HpyCH4III	ACNGT	1 cut(s)	910
HpyCH4V	TGCA	9 cut(s)	4, 65, 140, 145, 416, 471, 586, 673, 823
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 151, 701
HpyF3I	CTNAG	4 cut(s)	82, 247, 269, 380
Hsp92II	CATG	5 cut(s)	16, 134, 158, 264, 290
HspAI	GCGC	1 cut(s)	349
Ksp22I	TGATCA	4 cut(s)	205, 331, 660, 721
Kzo9I	GATC	8 cut(s)	22, 133, 205, 331, 364, 538, 660, 721
LguI	GCTCTTC	1 cut(s)	144
LmnI	GCTCC	3 cut(s)	356, 427, 502
Lsp1109I	GCAGC	5 cut(s)	400, 685, 685, 688, 707
LweI	GCATC	2 cut(s)	13, 573
MaeI	CTAG	3 cut(s)	75, 900, 919
MaeIII	GTNAC	2 cut(s)	77, 910
MalI	GATC	8 cut(s)	24, 135, 207, 333, 366, 540, 662, 723
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	8 cut(s)	22, 133, 205, 331, 364, 538, 660, 721
MboII	GAAGA	5 cut(s)	161, 476, 766, 806, 845
MflI	RGATCY	1 cut(s)	538
MluCI	AATT	7 cut(s)	41, 221, 296, 474, 664, 728, 772
MlyI	GAGTC	1 cut(s)	201
MnlI	CCTC	4 cut(s)	418, 525, 650, 653
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	388, 892
MseI	TTAA	5 cut(s)	32, 228, 233, 731, 759
MslI	CAYNNNNRTG	3 cut(s)	526, 581, 710
MspA1I	CMGCKG	1 cut(s)	698
MspI	CCGG	2 cut(s)	860, 872
Mva1269I	GAATGC	1 cut(s)	65
MvnI	CGCG	1 cut(s)	853
MwoI	GCNNNNNNNGC	3 cut(s)	71, 151, 701
NcoI	CCATGG	1 cut(s)	12
NdeI	CATATG	1 cut(s)	718
NdeII	GATC	8 cut(s)	22, 133, 205, 331, 364, 538, 660, 721
NlaIII	CATG	5 cut(s)	16, 134, 158, 264, 290
NlaIV	GGNNCC	2 cut(s)	540, 638
NmeAIII	GCCGAG	1 cut(s)	901
NmuCI	GTSAC	1 cut(s)	910
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	144
PctI	GAATGC	1 cut(s)	65
PdmI	GAANNNNTTC	2 cut(s)	388, 892
PfeI	GAWTC	2 cut(s)	265, 893
PkrI	GCNGC	6 cut(s)	415, 675, 697, 700, 703, 855
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	540, 638
PstNI	CAGNNNCTG	1 cut(s)	701
PsuI	RGATCY	1 cut(s)	538
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	1 cut(s)	883
RsaNI	GTAC	1 cut(s)	882
RseI	CAYNNNNRTG	3 cut(s)	526, 581, 710
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	5 cut(s)	32, 228, 233, 731, 759
SatI	GCNGC	6 cut(s)	414, 674, 696, 699, 702, 854
Sau3AI	GATC	8 cut(s)	22, 133, 205, 331, 364, 538, 660, 721
SchI	GAGTC	1 cut(s)	201
SetI	ASST	6 cut(s)	90, 256, 507, 700, 901, 920
SfaNI	GCATC	2 cut(s)	13, 573
SmiMI	CAYNNNNRTG	3 cut(s)	526, 581, 710
Sse9I	AATT	7 cut(s)	41, 221, 296, 474, 664, 728, 772
SsiI	CCGC	3 cut(s)	244, 509, 853
SspMI	CTAG	3 cut(s)	75, 900, 919
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	910
TaqI	TCGA	2 cut(s)	93, 462
TasI	AATT	7 cut(s)	41, 221, 296, 474, 664, 728, 772
TatI	WGTACW	1 cut(s)	881
TauI	GCSGC	1 cut(s)	856
TfiI	GAWTC	2 cut(s)	265, 893
Tru1I	TTAA	5 cut(s)	32, 228, 233, 731, 759
Tru9I	TTAA	5 cut(s)	32, 228, 233, 731, 759
TseFI	GTSAC	1 cut(s)	910
TseI	GCWGC	5 cut(s)	413, 673, 695, 698, 701
Tsp45I	GTSAC	1 cut(s)	910
TspDTI	ATGAA	4 cut(s)	111, 275, 328, 562
XapI	RAATTY	2 cut(s)	41, 772
XceI	RCATGY	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	848
XmnI	GAANNNNTTC	2 cut(s)	388, 892
XspI	CTAG	3 cut(s)	75, 900, 919
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.