Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0012580

Physical Location & Seq

Genomic Coordinates Reverse (-)

7123277 .. 7124004

Gene Structure 728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1085700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCGTTTGCATTGGAAGAACAGCAGTTGCAGAACTTAATCCACAGAGAGATCGAATTTGGGTTCGGGAAAGACGAAGATTTGGTGATTCCCACCTGGGTTTTGGACGCTCGATTGGAATCCATCACATGGGTTCTCCAGGTTGCTATGGTTAGATTGCTTTCTGTGGCGTGTCTATCTCTGGCTGCAAAGATGAAGGAGCAGAACATTCCATCACTGTCGCAATATGAAGTCGAAAATCCTCACTTTTTCGAAGGAAAACTGATTCAGAAAATGGAGCTTATGGTGTTGGGAGCACTGGAATGGAACATGAATATCATCACACCCTTCTCGTTTGTCGATTACTTCATCTCCAAGTTGTGCCAAGAATCTCCATCTGATGTAAAATTAAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

133

Amino Acids

15.22

Weight (kDa)

4.76

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	46 - 105	6.7e-12	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012580)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33190
malus_domestica	MD08G1085300.v1.1 MD08G1085700.v1.1 MD15G1070900.v1.1
prunus_persica	Prupe.1G423600_v2.0.a1
pyrus_communis	pycom08g07030 pycom15g06670
rosa_chinensis	RchiOBHm_Chr6g0309481
rosa_laevigata	RLG00000010562
rosa_multiflora	Rmu_sc0001212.1_g000003 Rmu_sc0007283.1_g000002 Rmu_sc0022500.1_g000003
rosa_roxburghii	Rroxscaffold_7G00159370
rosa_rugosa	Rorug06G0372300
rosa_samantha	Rh6AG485500 Rh6BG494900 Rh6CG499900 Rh6DG485900
rosa_wichuraiana	Rw6G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	129
AjnI	CCWGG	2 cut(s)	95, 138
AluBI	AGCT	1 cut(s)	280
AluI	AGCT	1 cut(s)	280
Alw21I	GWGCWC	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	97
AsuII	TTCGAA	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	3 cut(s)	131, 220, 382
BciT130I	CCWGG	2 cut(s)	97, 140
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	2 cut(s)	97, 140
BmrFI	CCNGG	2 cut(s)	97, 140
BpmI	CTGGAG	1 cut(s)	122
Bpu14I	TTCGAA	1 cut(s)	252
BsaBI	GATNNNNATC	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	303
Bse8I	GATNNNNATC	1 cut(s)	118
BseBI	CCWGG	2 cut(s)	97, 140
BseDI	CCNNGG	1 cut(s)	96
BseJI	GATNNNNATC	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	129
Bsp119I	TTCGAA	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	1 cut(s)	51
BspT104I	TTCGAA	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	51
Bst2UI	CCWGG	2 cut(s)	97, 140
Bst4CI	ACNGT	1 cut(s)	219
BstBI	TTCGAA	1 cut(s)	252
BstKTI	GATC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	51
BstNI	CCWGG	2 cut(s)	97, 140
BstSCI	CCNGG	2 cut(s)	95, 138
BstV1I	GCAGC	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	215, 296
CseI	GACGC	1 cut(s)	116
CviAII	CATG	2 cut(s)	129, 310
CviJI	RGCY	2 cut(s)	185, 280
CviKI_1	RGCY	2 cut(s)	185, 280
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
EcoRII	CCWGG	2 cut(s)	95, 138
FaeI	CATG	2 cut(s)	132, 313
FaiI	YATR	5 cut(s)	130, 149, 228, 284, 311
FatI	CATG	2 cut(s)	128, 309
Fnu4HI	GCNGC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	122
HgaI	GACGC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	132, 313
HinfI	GANTC	4 cut(s)	88, 119, 265, 368
HphI	GGTGA	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	270, 379
Hpy188III	TCNNGA	1 cut(s)	67
HpyAV	CCTTC	3 cut(s)	190, 248, 337
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4V	TGCA	3 cut(s)	11, 31, 188
Hsp92II	CATG	2 cut(s)	132, 313
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	3 cut(s)	199, 277, 293
LpnPI	CCDG	6 cut(s)	82, 109, 125, 152, 167, 284
Lsp1109I	GCAGC	1 cut(s)	172
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	2 cut(s)	29, 89
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	2 cut(s)	56, 386
MnlI	CCTC	1 cut(s)	252
MseI	TTAA	2 cut(s)	38, 389
MslI	CAYNNNNRTG	1 cut(s)	301
MspR9I	CCNGG	2 cut(s)	97, 140
MvaI	CCWGG	2 cut(s)	97, 140
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	2 cut(s)	132, 313
NspV	TTCGAA	1 cut(s)	252
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	4 cut(s)	88, 119, 265, 368
PflMI	CCANNNNNTGG	1 cut(s)	129
PkrI	GCNGC	1 cut(s)	187
Psp6I	CCWGG	2 cut(s)	95, 138
PspGI	CCWGG	2 cut(s)	95, 138
RseI	CAYNNNNRTG	1 cut(s)	301
SaqAI	TTAA	2 cut(s)	38, 389
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	51
ScrFI	CCNGG	2 cut(s)	97, 140
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	3 cut(s)	98, 144, 282
SfuI	TTCGAA	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	301
Sse9I	AATT	2 cut(s)	56, 386
StyD4I	CCNGG	2 cut(s)	95, 138
TaaI	ACNGT	1 cut(s)	219
TaqI	TCGA	5 cut(s)	54, 112, 234, 252, 339
TasI	AATT	2 cut(s)	56, 386
TfiI	GAWTC	4 cut(s)	88, 119, 265, 368
Tru1I	TTAA	2 cut(s)	38, 389
Tru9I	TTAA	2 cut(s)	38, 389
TscAI	CASTG	2 cut(s)	222, 303
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	4 cut(s)	209, 243, 326, 337
TspRI	CASTG	2 cut(s)	222, 303
Van91I	CCANNNNNTGG	1 cut(s)	129
XapI	RAATTY	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.