MD15G1070900.v1.1

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
4846587 .. 4850040
3454 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1070900.v1.1.491

Sequence Viewer

Length: 1683 bp
ATGAAGAGAAAAAGAGACGAAAATGGTGATCCTTTATCGCGGGACCTTTCTTGCCGAGAAAGTGACAGCTTTTTCTTCAACGGAGATTGTGGAGAAGACAAACCAATCCTCAATCTCAACAACTATTGTGATGGCTTTGCACTGGAAGAAGACCACTTGCAGAACTTAATTCTCAGAGAGATCGAATTTGGGTTCGAGAAAGACGAAGATTTGGTGATTCCCATTTGGGTTTTGAACGCTCGAGTGGAATCCATCACATGGGTTCTCCAAAGAAGAAGGGCTCTTGGATTTCATCCCAGAACAGCATATCTGTGCATGACATACTTTGATCGGTTCATTTCCCTGAGACAAATCCCTGTTAATAATAAAGAAGCTGTGGTTAGATTACTTTCAGTGGCGTGTCTATCTCTGGCTGCAAAGATGGACGAGCAGAACATTCCATCACTGTCACAGTACGAAGTCGAAAATCCTCACCTTTTTGAAGTAAAACTGATTCAGAGAATGGAGCTTACGGTGTTGGGAGCACTGGAATGGAAGATGAATATGATTACACCCTTCTCGTTTATCGATTACTTCGTCTCCAAGTTGTGCCAAGAATCTCTATCTGATGTAAAATCCAAGATTGCAGGCCTCCTCCTTTCCATAATCACAGAGATTAATTCAATGCATCAACGACCGTCCGCTGTAGCAGCCGCGGCCACTTTGATGGCATTGGATCAGAAACTAACAAAAGAAGCATTGGAATTAAAGATAAACTCTGTATCAGAACTGAAATTTTTGGAAATTAGCTTTCTTGCCAAGAAAGAAACAATGGACGGTGGCAATGACGATGATCCTTTATCGCCGGACCTTTCTTGCCAAGAAAATCCTGAATTTTTGTACGATGAGGTGCCAGTTGAAAACCCAGATGACGGCATCAACAACTTAATCGACATAGAGATCGGATTCGGGTTCCAGAGAGATGAAGCTTTGATCATTCCCAACTGGGTTTTGGAAGTTCGATCGGAATCCATCACATGGGCTCTCAACATTGTAGAAGAAAGACCTGAAATTAGATTGCTTTCGGTGGCCTGCCTTTCGTTGGCGGCATGGACGGAGAGGATGATGCTCCCACCGCTGTCACAACACGAAGACGGAGATTACTTCTTTGCAACGGGATCTATTGTACAAAAGGCGCACGGGGTGGTGACAGCATTAGGATGGGACATGGATATAATCACACCCTTCGCGTTTCTCGATTACTTGGTCTCCAAGTTATGGCAAGAATTTCCACCAGATGTGAAATTTCAGATTGCAGCACACCTCCGTTCTGTAATGACAGAGATCAATTTAATGCATCATCGGCCGTCCGCCGTAGCAGCTGCCGCCACCTTAATGGCATTGGATCAGAATTTAACTAATGAATCATTGAATGTCAGGATATCGGTTCCTGATTTGAATTTTTTGGAAACTGTGAGTTTTTTTGGTTCGTTAATTAATCTCATTAGTTGGTTAATCAAATGGATTAAAGACTGGATTTTGCTTAATGGGTTGATTAATCTTGGACTTGTTGGCCCTTGTGTTGCAGGACGCTGTGTTTTTCTTGTACCATCTAATGCAGGAGCGGTTAGGTGGTTGAAAGTAAATAACCCAAAAGGTGCAGTAAATGTTGTAGAAAATTCTTCAGTTACAGCAGAGAAGTGA

Protein Analysis

561

Amino Acids

63.18

Weight (kDa)

4.8

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 79 - 181 3e-20 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 889
AccB7I CCANNNNNTGG 3 cut(s) 258, 1017, 1257
AccBSI CCGCTC 1 cut(s) 1604
AccII CGCG 3 cut(s) 40, 695, 1229
AciI CCGC 9 cut(s) 40, 681, 693, 695, 1085, 1115, 1350, 1365, 1604
AclWI GGATC 5 cut(s) 23, 723, 827, 1165, 1392
AcoI YGGCCR 2 cut(s) 696, 1343
AcsI RAATTY 8 cut(s) 185, 773, 872, 1265, 1283, 1390, 1438, 1657
AcuI CTGAAG 1 cut(s) 1647
AdeI CACNNNGTG 1 cut(s) 1183
AfaI GTAC 4 cut(s) 455, 881, 1167, 1587
AfiI CCNNNNNNNGG 5 cut(s) 258, 911, 1017, 1081, 1257
AgsI TTSAA 8 cut(s) 79, 235, 482, 663, 899, 1411, 1438, 1618
AluBI AGCT 6 cut(s) 69, 374, 508, 789, 968, 1361
AluI AGCT 6 cut(s) 69, 374, 508, 789, 968, 1361
Alw21I GWGCWC 1 cut(s) 526
Alw26I GTCTC 4 cut(s) 9, 340, 583, 1252
AlwI GGATC 5 cut(s) 23, 723, 827, 1165, 1392
Ama87I CYCGRG 1 cut(s) 240
AoxI GGCC 5 cut(s) 628, 696, 1068, 1343, 1552
ApeKI GCWGC 5 cut(s) 413, 689, 1295, 1358, 1361
ApoI RAATTY 8 cut(s) 185, 773, 872, 1265, 1283, 1390, 1438, 1657
AseI ATTAAT 3 cut(s) 657, 1476, 1536
AspLEI GCGC 1 cut(s) 1177
AspS9I GGNCC 3 cut(s) 43, 847, 1553
AsuHPI GGTGA 4 cut(s) 38, 226, 464, 1198
AvaI CYCGRG 1 cut(s) 240
AvaII GGWCC 2 cut(s) 43, 847
BanI GGYRCC 1 cut(s) 889
BanII GRGCYC 2 cut(s) 283, 1024
BbsI GAAGAC 3 cut(s) 102, 156, 1137
Bbv12I GWGCWC 1 cut(s) 526
BbvI GCAGC 5 cut(s) 400, 701, 1307, 1348, 1370
BccI CCATC 8 cut(s) 125, 260, 415, 448, 700, 1019, 1194, 1597
BceAI ACGGC 3 cut(s) 928, 1330, 1337
BclI TGATCA 1 cut(s) 972
BcoDI GTCTC 4 cut(s) 9, 340, 583, 1252
BfmI CTRYAG 1 cut(s) 684
BisI GCNGC 9 cut(s) 414, 690, 693, 696, 1086, 1296, 1359, 1362, 1365
BlsI GCNGC 9 cut(s) 415, 691, 694, 697, 1087, 1297, 1360, 1363, 1366
Bme18I GGWCC 2 cut(s) 43, 847
BmeT110I CYCGRG 1 cut(s) 240
BmgT120I GGNCC 3 cut(s) 43, 847, 1553
BmiI GGNNCC 4 cut(s) 44, 891, 953, 1428
BmrI ACTGGG 1 cut(s) 994
BmsI GCATC 4 cut(s) 676, 924, 1095, 1345
BmuI ACTGGG 1 cut(s) 994
BpiI GAAGAC 3 cut(s) 102, 156, 1137
Bsa29I ATCGAT 1 cut(s) 567
BsaBI GATNNNNATC 1 cut(s) 1006
BsaI GGTCTC 1 cut(s) 1252
BsaJI CCNNGG 1 cut(s) 693
BsaXI ACNNNNNCTCC 4 cut(s) 563, 593, 1232, 1262
Bsc4I CCNNNNNNNGG 5 cut(s) 258, 911, 1017, 1081, 1257
Bse1I ACTGG 5 cut(s) 147, 531, 893, 989, 1517
Bse3DI GCAATG 1 cut(s) 829
Bse8I GATNNNNATC 1 cut(s) 1006
BseCI ATCGAT 1 cut(s) 567
BseDI CCNNGG 1 cut(s) 693
BseGI GGATG 3 cut(s) 292, 1107, 1205
BseJI GATNNNNATC 1 cut(s) 1006
BseLI CCNNNNNNNGG 5 cut(s) 258, 911, 1017, 1081, 1257
BseMI GCAATG 1 cut(s) 829
BseMII CTCAG 2 cut(s) 187, 335
BseNI ACTGG 5 cut(s) 147, 531, 893, 989, 1517
BseRI GAGGAG 1 cut(s) 623
BseX3I CGGCCG 1 cut(s) 1343
BseXI GCAGC 5 cut(s) 400, 701, 1307, 1348, 1370
BsgI GTGCAG 1 cut(s) 1659
Bsh1236I CGCG 3 cut(s) 40, 695, 1229
Bsh1285I CGRYCG 3 cut(s) 677, 1004, 1346
BshFI GGCC 5 cut(s) 630, 698, 1070, 1345, 1554
BshNI GGYRCC 1 cut(s) 889
BshVI ATCGAT 1 cut(s) 567
BsiEI CGRYCG 3 cut(s) 677, 1004, 1346
BsiHKAI GWGCWC 1 cut(s) 526
BsiHKCI CYCGRG 1 cut(s) 240
BsiSI CCGG 1 cut(s) 845
BslFI GGGAC 2 cut(s) 56, 1217
BslI CCNNNNNNNGG 5 cut(s) 258, 911, 1017, 1081, 1257
BsmAI GTCTC 4 cut(s) 9, 340, 583, 1252
BsmBI CGTCTC 2 cut(s) 9, 583
BsmFI GGGAC 2 cut(s) 56, 1217
BsnI GGCC 5 cut(s) 630, 698, 1070, 1345, 1554
Bso31I GGTCTC 1 cut(s) 1252
BsoBI CYCGRG 1 cut(s) 240
Bsp1286I GDGCHC 3 cut(s) 283, 526, 1024
Bsp1407I TGTACA 1 cut(s) 1165
BspACI CCGC 9 cut(s) 40, 681, 693, 695, 1085, 1115, 1350, 1365, 1604
BspANI GGCC 5 cut(s) 630, 698, 1070, 1345, 1554
BspCNI CTCAG 2 cut(s) 186, 336
BspDI ATCGAT 1 cut(s) 567
BspFNI CGCG 3 cut(s) 40, 695, 1229
BspLI GGNNCC 4 cut(s) 44, 891, 953, 1428
BspPI GGATC 5 cut(s) 23, 723, 827, 1165, 1392
BspT107I GGYRCC 1 cut(s) 889
BspTNI GGTCTC 1 cut(s) 1252
BsrBI CCGCTC 1 cut(s) 1604
BsrDI GCAATG 1 cut(s) 829
BsrGI TGTACA 1 cut(s) 1165
BsrI ACTGG 5 cut(s) 147, 531, 893, 989, 1517
BssECI CCNNGG 1 cut(s) 693
Bst4CI ACNGT 6 cut(s) 447, 453, 514, 678, 818, 1453
BstAUI TGTACA 1 cut(s) 1165
BstC8I GCNNGC 2 cut(s) 628, 1072
BstDEI CTNAG 2 cut(s) 173, 344
BstDSI CCRYGG 1 cut(s) 693
BstF5I GGATG 3 cut(s) 292, 1107, 1205
BstFNI CGCG 3 cut(s) 40, 695, 1229
BstHHI GCGC 1 cut(s) 1177
BstMAI GTCTC 4 cut(s) 9, 340, 583, 1252
BstMCI CGRYCG 3 cut(s) 677, 1004, 1346
BstMWI GCNNNNNNNGC 6 cut(s) 689, 695, 1114, 1342, 1358, 1364
BstSFI CTRYAG 1 cut(s) 684
BstUI CGCG 3 cut(s) 40, 695, 1229
BstV1I GCAGC 5 cut(s) 400, 701, 1307, 1348, 1370
BstV2I GAAGAC 3 cut(s) 102, 156, 1137
BstX2I RGATCY 1 cut(s) 1157
BstXI CCANNNNNNTGG 2 cut(s) 706, 1375
BstYI RGATCY 1 cut(s) 1157
BstZI CGGCCG 1 cut(s) 1343
Bsu15I ATCGAT 1 cut(s) 567
BsuRI GGCC 5 cut(s) 630, 698, 1070, 1345, 1554
BsuTUI ATCGAT 1 cut(s) 567
BtgI CCRYGG 1 cut(s) 693
BtsCI GGATG 3 cut(s) 292, 1107, 1205
BtsIMutI CAGTG 4 cut(s) 140, 399, 443, 524
Cac8I GCNNGC 2 cut(s) 628, 1072
CfoI GCGC 1 cut(s) 1177
Cfr13I GGNCC 3 cut(s) 43, 847, 1553
Cfr42I CCGCGG 1 cut(s) 696
ClaI ATCGAT 1 cut(s) 567
CseI GACGC 1 cut(s) 1578
Csp6I GTAC 4 cut(s) 454, 880, 1166, 1586
CviAII CATG 5 cut(s) 258, 316, 1017, 1089, 1207
CviQI GTAC 4 cut(s) 454, 880, 1166, 1586
DdeI CTNAG 2 cut(s) 173, 344
DraIII CACNNNGTG 1 cut(s) 1183
EaeI YGGCCR 2 cut(s) 696, 1343
EagI CGGCCG 1 cut(s) 1343
EciI GGCGGA 1 cut(s) 1339
EclXI CGGCCG 1 cut(s) 1343
Eco147I AGGCCT 1 cut(s) 630
Eco24I GRGCYC 2 cut(s) 283, 1024
Eco31I GGTCTC 1 cut(s) 1252
Eco32I GATATC 1 cut(s) 1422
Eco47I GGWCC 2 cut(s) 43, 847
Eco52I CGGCCG 1 cut(s) 1343
Eco57I CTGAAG 1 cut(s) 1647
Eco88I CYCGRG 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 43
EcoRV GATATC 1 cut(s) 1422
EcoT22I ATGCAT 2 cut(s) 669, 1338
EcoT38I GRGCYC 2 cut(s) 283, 1024
Esp3I CGTCTC 2 cut(s) 9, 583
FaeI CATG 5 cut(s) 261, 319, 1020, 1092, 1210
FaqI GGGAC 2 cut(s) 56, 1217
FatI CATG 5 cut(s) 257, 315, 1016, 1088, 1206
FauI CCCGC 1 cut(s) 33
FbaI TGATCA 1 cut(s) 972
Fnu4HI GCNGC 9 cut(s) 414, 690, 693, 696, 1086, 1296, 1359, 1362, 1365
FokI GGATG 3 cut(s) 279, 1114, 1212
FriOI GRGCYC 2 cut(s) 283, 1024
Fsp4HI GCNGC 9 cut(s) 414, 690, 693, 696, 1086, 1296, 1359, 1362, 1365
GlaI GCGC 1 cut(s) 1176
GluI GCNGC 9 cut(s) 414, 690, 693, 696, 1086, 1296, 1359, 1362, 1365
HaeIII GGCC 5 cut(s) 630, 698, 1070, 1345, 1554
HapII CCGG 1 cut(s) 845
HgaI GACGC 1 cut(s) 1578
HhaI GCGC 1 cut(s) 1177
Hin1II CATG 5 cut(s) 261, 319, 1020, 1092, 1210
Hin6I GCGC 1 cut(s) 1175
HinP1I GCGC 1 cut(s) 1175
HindIII AAGCTT 1 cut(s) 966
HinfI GANTC 7 cut(s) 217, 248, 493, 596, 945, 1007, 1403
HpaII CCGG 1 cut(s) 845
HphI GGTGA 4 cut(s) 38, 226, 464, 1198
Hpy188I TCNGA 9 cut(s) 176, 498, 607, 720, 766, 944, 1006, 1290, 1389
Hpy188III TCNNGA 6 cut(s) 196, 869, 955, 1235, 1417, 1430
HpyAV CCTTC 3 cut(s) 270, 565, 1234
HpyCH4III ACNGT 6 cut(s) 447, 453, 514, 678, 818, 1453
HpyF10VI GCNNNNNNNGC 6 cut(s) 689, 695, 1114, 1342, 1358, 1364
HpyF3I CTNAG 2 cut(s) 173, 344
Hsp92II CATG 5 cut(s) 261, 319, 1020, 1092, 1210
HspAI GCGC 1 cut(s) 1175
Ksp22I TGATCA 1 cut(s) 972
KspI CCGCGG 1 cut(s) 696
LmnI GCTCC 4 cut(s) 505, 521, 1113, 1601
Lsp1109I GCAGC 5 cut(s) 400, 701, 1307, 1348, 1370
LweI GCATC 4 cut(s) 676, 924, 1095, 1345
MaeIII GTNAC 5 cut(s) 62, 447, 1119, 1186, 1666
MbiI CCGCTC 1 cut(s) 1604
MflI RGATCY 1 cut(s) 1157
MhlI GDGCHC 3 cut(s) 283, 526, 1024
MnlI CCTC 7 cut(s) 119, 480, 641, 644, 880, 1092, 1313
Mph1103I ATGCAT 2 cut(s) 669, 1338
MslI CAYNNNNRTG 5 cut(s) 310, 529, 704, 1198, 1373
MspA1I CMGCKG 4 cut(s) 683, 695, 1117, 1361
MspI CCGG 1 cut(s) 845
MvnI CGCG 3 cut(s) 40, 695, 1229
MwoI GCNNNNNNNGC 6 cut(s) 689, 695, 1114, 1342, 1358, 1364
NlaIII CATG 5 cut(s) 261, 319, 1020, 1092, 1210
NlaIV GGNNCC 4 cut(s) 44, 891, 953, 1428
NmeAIII GCCGAG 1 cut(s) 80
NmuCI GTSAC 4 cut(s) 62, 447, 1119, 1186
NsiI ATGCAT 2 cut(s) 669, 1338
PacI TTAATTAA 1 cut(s) 1476
PaeR7I CTCGAG 1 cut(s) 240
PceI AGGCCT 1 cut(s) 630
PcsI WCGNNNNNNNCGW 3 cut(s) 201, 573, 1233
PfeI GAWTC 7 cut(s) 217, 248, 493, 596, 945, 1007, 1403
PflMI CCANNNNNTGG 3 cut(s) 258, 1017, 1257
PkrI GCNGC 9 cut(s) 415, 691, 694, 697, 1087, 1297, 1360, 1363, 1366
Ple19I CGATCG 1 cut(s) 1004
PpuMI RGGWCCY 1 cut(s) 43
PshBI ATTAAT 3 cut(s) 657, 1476, 1536
Psp5II RGGWCCY 1 cut(s) 43
PspN4I GGNNCC 4 cut(s) 44, 891, 953, 1428
PspPI GGNCC 3 cut(s) 43, 847, 1553
PspPPI RGGWCCY 1 cut(s) 43
PspXI VCTCGAGB 1 cut(s) 240
PsuI RGATCY 1 cut(s) 1157
PvuI CGATCG 1 cut(s) 1004
PvuII CAGCTG 1 cut(s) 1361
RsaI GTAC 4 cut(s) 455, 881, 1167, 1587
RsaNI GTAC 4 cut(s) 454, 880, 1166, 1586
RseI CAYNNNNRTG 5 cut(s) 310, 529, 704, 1198, 1373
SacII CCGCGG 1 cut(s) 696
SatI GCNGC 9 cut(s) 414, 690, 693, 696, 1086, 1296, 1359, 1362, 1365
Sau96I GGNCC 3 cut(s) 43, 847, 1553
SduI GDGCHC 3 cut(s) 283, 526, 1024
SfaNI GCATC 4 cut(s) 676, 924, 1095, 1345
SfcI CTRYAG 1 cut(s) 684
Sfr274I CTCGAG 1 cut(s) 240
Sfr303I CCGCGG 1 cut(s) 696
SgrBI CCGCGG 1 cut(s) 696
SinI GGWCC 2 cut(s) 43, 847
SlaI CTCGAG 1 cut(s) 240
SmiMI CAYNNNNRTG 5 cut(s) 310, 529, 704, 1198, 1373
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
SseBI AGGCCT 1 cut(s) 630
SsiI CCGC 9 cut(s) 40, 681, 693, 695, 1085, 1115, 1350, 1365, 1604
StuI AGGCCT 1 cut(s) 630
TaaI ACNGT 6 cut(s) 447, 453, 514, 678, 818, 1453
TaqI TCGA 8 cut(s) 183, 195, 241, 462, 567, 930, 1000, 1236
TatI WGTACW 1 cut(s) 1165
TauI GCSGC 4 cut(s) 695, 698, 1088, 1367
TfiI GAWTC 7 cut(s) 217, 248, 493, 596, 945, 1007, 1403
TscAI CASTG 4 cut(s) 147, 399, 450, 531
TseFI GTSAC 4 cut(s) 62, 447, 1119, 1186
TseI GCWGC 5 cut(s) 413, 689, 1295, 1358, 1361
Tsp45I GTSAC 4 cut(s) 62, 447, 1119, 1186
TspDTI ATGAA 6 cut(s) 17, 281, 325, 554, 978, 1416
TspGWI ACGGA 4 cut(s) 96, 1109, 1149, 1295
TspRI CASTG 4 cut(s) 147, 399, 450, 531
Van91I CCANNNNNTGG 3 cut(s) 258, 1017, 1257
VpaK11BI GGWCC 2 cut(s) 43, 847
VspI ATTAAT 3 cut(s) 657, 1476, 1536
XapI RAATTY 8 cut(s) 185, 773, 872, 1265, 1283, 1390, 1438, 1657
XcmI CCANNNNNNNNNTGG 1 cut(s) 988
XhoI CTCGAG 1 cut(s) 240
Zsp2I ATGCAT 2 cut(s) 669, 1338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.