Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012580

Physical Location & Seq

Genomic Coordinates Reverse (-)

36526626 .. 36528910

Gene Structure 2285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G423600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAACGGAGATCCTTCATCGCCAGACCTTCATTGCCATGAAGATCCGAACTTTTTGTATGAAGATGATGAAGAGATGGCAGAAGTAAACGTAGTCGTTAATCAAAACGAAATTGAGTTGGAAGAAGCCCACTTGCATAGCTTAATTGACCAAGAGATCGCATTTGGGTTCAGGAGGGTTGAAGATTTGGTCATTGACGACTGGGTTCAAGAAGCTCGCTTGCAAGCTATCACATGGGTTCAAACAAGAACAAGAGCTCTTGGGTTTCATCCCAGAACAGCATATTTGGCCATCACATACTTTGATCGGTTCATTTCCCTGCAAGCCATCCCTGAAAAAAAAAGGGCTGCTTTCGTTAGAGTGATTTCAGTGGCATGTCTATTATTGGCTGCAAAGATGGAGGAGATGAACCGCCCACCACTTTCACAATACACAATCCAATTCCAAGGCGGAAGTATTAAGAAAATGGAGCTTCTGGTATTGGTAGTCTTGAAATGGGAGATGAATTTAATCACACCCTTTGCGTTTCTTGATAACTTCATCGCAAAGTTGTGCCAAGAATCTCCACCAGGTCTAAAATCCGGGATTGAACAACGGCTCCTTTCCATAATGACAGAGATTCATTTAATGCATCATCGACCATCTGCCATAGCAGCTGCCGCCACCTTGATGGCAGTGGATCAGAACTTAGCACAAGAAGCATTGGAAGCCAAGATAACATCCATTCCTGAATTGTACTTCCTGGAAATTGAAGCTGTGTATTCATATTACACGATAATGCAGGTGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

264

Amino Acids

30.03

Weight (kDa)

4.87

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012580)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33190
malus_domestica	MD08G1085300.v1.1 MD08G1085700.v1.1 MD15G1070900.v1.1
prunus_persica	Prupe.1G423600_v2.0.a1
pyrus_communis	pycom08g07030 pycom15g06670
rosa_chinensis	RchiOBHm_Chr6g0309481
rosa_laevigata	RLG00000010562
rosa_multiflora	Rmu_sc0001212.1_g000003 Rmu_sc0007283.1_g000002 Rmu_sc0022500.1_g000003
rosa_roxburghii	Rroxscaffold_7G00159370
rosa_rugosa	Rorug06G0372300
rosa_samantha	Rh6AG485500 Rh6BG494900 Rh6CG499900 Rh6DG485900
rosa_wichuraiana	Rw6G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	772
Acc36I	ACCTGC	1 cut(s)	772
AccB1I	GGYRCC	1 cut(s)	784
AciI	CCGC	3 cut(s)	412, 450, 660
AclWI	GGATC	3 cut(s)	5, 38, 687
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	505
AfaI	GTAC	1 cut(s)	737
AgsI	TTSAA	6 cut(s)	182, 209, 242, 493, 590, 752
AjnI	CCWGG	2 cut(s)	568, 741
AloI	GAACNNNNNNTCC	2 cut(s)	582, 614
AluBI	AGCT	7 cut(s)	141, 215, 227, 257, 472, 656, 755
AluI	AGCT	7 cut(s)	141, 215, 227, 257, 472, 656, 755
Alw21I	GWGCWC	1 cut(s)	259
AlwI	GGATC	3 cut(s)	5, 38, 687
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	4 cut(s)	347, 389, 653, 656
ApoI	RAATTY	1 cut(s)	505
AsuC2I	CCSGG	1 cut(s)	583
BalI	TGGCCA	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	784
BanII	GRGCYC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	4 cut(s)	334, 376, 643, 665
BccI	CCATC	6 cut(s)	70, 299, 335, 391, 649, 664
BceAI	ACGGC	1 cut(s)	611
BciT130I	CCWGG	2 cut(s)	570, 743
BcnI	CCSGG	1 cut(s)	583
BfuAI	ACCTGC	1 cut(s)	772
BisI	GCNGC	5 cut(s)	348, 390, 654, 657, 660
BlsI	GCNGC	5 cut(s)	349, 391, 655, 658, 661
Bme1390I	CCNGG	3 cut(s)	570, 583, 743
BmiI	GGNNCC	2 cut(s)	599, 786
BmrFI	CCNGG	3 cut(s)	570, 583, 743
BmrI	ACTGGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	640
BmuI	ACTGGG	1 cut(s)	211
BpuMI	CCSGG	1 cut(s)	583
BsaJI	CCNNGG	1 cut(s)	445
BsaXI	ACNNNNNCTCC	2 cut(s)	582, 612
Bse1I	ACTGG	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	31
BseBI	CCWGG	2 cut(s)	570, 743
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	3 cut(s)	268, 327, 719
BseMI	GCAATG	1 cut(s)	31
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	4 cut(s)	334, 376, 643, 665
BshFI	GGCC	1 cut(s)	290
BshNI	GGYRCC	1 cut(s)	784
BsiHKAI	GWGCWC	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	582
BsnI	GGCC	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	5 cut(s)	10, 43, 156, 304, 679
BspACI	CCGC	3 cut(s)	412, 450, 660
BspANI	GGCC	1 cut(s)	290
BspLI	GGNNCC	2 cut(s)	599, 786
BspMI	ACCTGC	1 cut(s)	772
BspPI	GGATC	3 cut(s)	5, 38, 687
BspT107I	GGYRCC	1 cut(s)	784
BsrDI	GCAATG	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	5 cut(s)	10, 43, 156, 304, 679
BssT1I	CCWWGG	1 cut(s)	445
Bst2UI	CCWGG	2 cut(s)	570, 743
Bst6I	CTCTTC	1 cut(s)	66
BstC8I	GCNNGC	4 cut(s)	217, 221, 225, 324
BstDEI	CTNAG	1 cut(s)	688
BstF5I	GGATG	3 cut(s)	268, 327, 719
BstKTI	GATC	5 cut(s)	13, 46, 159, 307, 682
BstMBI	GATC	5 cut(s)	10, 43, 156, 304, 679
BstMWI	GCNNNNNNNGC	5 cut(s)	287, 653, 659, 698, 707
BstNI	CCWGG	2 cut(s)	570, 743
BstNSI	RCATGY	1 cut(s)	378
BstSCI	CCNGG	3 cut(s)	568, 581, 741
BstV1I	GCAGC	4 cut(s)	334, 376, 643, 665
BstX2I	RGATCY	2 cut(s)	10, 43
BstXI	CCANNNNNNTGG	1 cut(s)	670
BstYI	RGATCY	2 cut(s)	10, 43
BsuRI	GGCC	1 cut(s)	290
BtgZI	GCGATG	2 cut(s)	3, 526
BtsCI	GGATG	3 cut(s)	268, 327, 719
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	2 cut(s)	375, 681
BveI	ACCTGC	1 cut(s)	772
Cac8I	GCNNGC	4 cut(s)	217, 221, 225, 324
CsiI	ACCWGGT	1 cut(s)	568
Csp6I	GTAC	1 cut(s)	736
CviAII	CATG	3 cut(s)	38, 234, 375
CviQI	GTAC	1 cut(s)	736
DdeI	CTNAG	1 cut(s)	688
DpnI	GATC	5 cut(s)	12, 45, 158, 306, 681
DpnII	GATC	5 cut(s)	10, 43, 156, 304, 679
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
EciI	GGCGGA	1 cut(s)	465
Ecl136II	GAGCTC	1 cut(s)	257
Eco130I	CCWWGG	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	568, 741
EcoT14I	CCWWGG	1 cut(s)	445
EcoT22I	ATGCAT	1 cut(s)	633
EcoT38I	GRGCYC	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	445
FaeI	CATG	3 cut(s)	41, 237, 378
FalI	AAGNNNNNCTT	2 cut(s)	334, 366
FatI	CATG	3 cut(s)	37, 233, 374
Fnu4HI	GCNGC	5 cut(s)	348, 390, 654, 657, 660
FokI	GGATG	3 cut(s)	255, 314, 706
FriOI	GRGCYC	1 cut(s)	259
Fsp4HI	GCNGC	5 cut(s)	348, 390, 654, 657, 660
GluI	GCNGC	5 cut(s)	348, 390, 654, 657, 660
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	1 cut(s)	582
Hin1II	CATG	3 cut(s)	41, 237, 378
HinfI	GANTC	2 cut(s)	560, 619
HpaII	CCGG	1 cut(s)	582
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	48, 684
Hpy188III	TCNNGA	5 cut(s)	172, 209, 490, 530, 728
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	2 cut(s)	24, 38
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	6 cut(s)	136, 223, 322, 392, 631, 781
HpyF10VI	GCNNNNNNNGC	5 cut(s)	287, 653, 659, 698, 707
HpyF3I	CTNAG	1 cut(s)	688
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	41, 237, 378
Kzo9I	GATC	5 cut(s)	10, 43, 156, 304, 679
LmnI	GCTCC	2 cut(s)	469, 603
Lsp1109I	GCAGC	4 cut(s)	334, 376, 643, 665
LweI	GCATC	1 cut(s)	640
MabI	ACCWGGT	1 cut(s)	568
MaeII	ACGT	1 cut(s)	90
MalI	GATC	5 cut(s)	12, 45, 158, 306, 681
MboI	GATC	5 cut(s)	10, 43, 156, 304, 679
MboII	GAAGA	5 cut(s)	53, 74, 83, 134, 194
MflI	RGATCY	2 cut(s)	10, 43
MhlI	GDGCHC	1 cut(s)	259
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	6 cut(s)	111, 144, 440, 505, 731, 747
MluNI	TGGCCA	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	2 cut(s)	168, 394
Mox20I	TGGCCA	1 cut(s)	290
Mph1103I	ATGCAT	1 cut(s)	633
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	5 cut(s)	99, 143, 459, 509, 626
MslI	CAYNNNNRTG	3 cut(s)	36, 668, 776
Msp20I	TGGCCA	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	1 cut(s)	582
MspR9I	CCNGG	3 cut(s)	570, 583, 743
MvaI	CCWGG	2 cut(s)	570, 743
MwoI	GCNNNNNNNGC	5 cut(s)	287, 653, 659, 698, 707
NciI	CCSGG	1 cut(s)	583
NdeII	GATC	5 cut(s)	10, 43, 156, 304, 679
NlaIII	CATG	3 cut(s)	41, 237, 378
NlaIV	GGNNCC	2 cut(s)	599, 786
NsiI	ATGCAT	1 cut(s)	633
NspI	RCATGY	1 cut(s)	378
PaqCI	CACCTGC	1 cut(s)	772
PfeI	GAWTC	2 cut(s)	560, 619
PfoI	TCCNGGA	2 cut(s)	581, 741
PkrI	GCNGC	5 cut(s)	349, 391, 655, 658, 661
Psp124BI	GAGCTC	1 cut(s)	259
Psp6I	CCWGG	2 cut(s)	568, 741
PspGI	CCWGG	2 cut(s)	568, 741
PspN4I	GGNNCC	2 cut(s)	599, 786
PsuI	RGATCY	2 cut(s)	10, 43
PvuII	CAGCTG	1 cut(s)	656
RsaI	GTAC	1 cut(s)	737
RsaNI	GTAC	1 cut(s)	736
RseI	CAYNNNNRTG	3 cut(s)	36, 668, 776
SacI	GAGCTC	1 cut(s)	259
SaqAI	TTAA	5 cut(s)	99, 143, 459, 509, 626
SatI	GCNGC	5 cut(s)	348, 390, 654, 657, 660
Sau3AI	GATC	5 cut(s)	10, 43, 156, 304, 679
ScrFI	CCNGG	3 cut(s)	570, 583, 743
SduI	GDGCHC	1 cut(s)	259
SexAI	ACCWGGT	1 cut(s)	568
SfaNI	GCATC	1 cut(s)	640
SmiMI	CAYNNNNRTG	3 cut(s)	36, 668, 776
Sse9I	AATT	6 cut(s)	111, 144, 440, 505, 731, 747
SsiI	CCGC	3 cut(s)	412, 450, 660
SstI	GAGCTC	1 cut(s)	259
StyD4I	CCNGG	3 cut(s)	568, 581, 741
StyI	CCWWGG	1 cut(s)	445
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	637
TasI	AATT	6 cut(s)	111, 144, 440, 505, 731, 747
TatI	WGTACW	1 cut(s)	735
TauI	GCSGC	1 cut(s)	662
TfiI	GAWTC	2 cut(s)	560, 619
Tru1I	TTAA	5 cut(s)	99, 143, 459, 509, 626
Tru9I	TTAA	5 cut(s)	99, 143, 459, 509, 626
TscAI	CASTG	2 cut(s)	375, 681
TseI	GCWGC	4 cut(s)	347, 389, 653, 656
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	2 cut(s)	375, 681
XapI	RAATTY	1 cut(s)	505
XceI	RCATGY	1 cut(s)	378
Zsp2I	ATGCAT	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.