RchiOBHm_Chr6g0309481

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0012580
Physical Location & Seq
Forward (+)
67160083 .. 67161963
1881 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27830

Sequence Viewer

Length: 909 bp
ATGGAAGGCGATCATTTCTTAACCGACTTTTCTTGCGAAGAAAATCCTGCCTTTTTGGCAAGTAAGTCAGAGGTGGTCGATGACGACACATCGCATAATACCATTGACATCTACTATGATCCTGCATTGCAAGAAGAGCACGTTAGAGTTTTACTTGAGAAGGAGATTGATTTTGGATTCAAAAATAATGATGAAGGATTTGTCAAATGGATTGAGTTCAGAGATGACCGGTTGCAAGCCATTAAATGGATTCTCAAAAACAGAGCGGTTCATGGATTTCAATTCCGAACAGCATTTTTATCCATTATGTACTTTGACCAGTTCATTTCCAAGCGGTCCTTCAAGGGCAATAAAACAACTTGGCTCAGAACACTTTCTGTGGCTTGCTTATCTTTGGCTGCAAAAATGGAGGAGCAAAGAAATCCATTACTATCAGAGTATAAAGTTGAAGATTGCATAATTGAAAGGAGATGGATTAGCCAAATGGAGCTTGCGGTGTTGTCCACATTAAAATGGAGGATGGATCCAATAACTCCATTTGCTTTTATTGATTACTTCATCAAAAGGTTCCACTTCAACAAGGAATATCCACTAGAAACAAAATACAATATCATTGAAGGATTCCTCATCTATCTTACCCGAGTGATAAATGTAATGCAACATCGACCATCTGTCTTAGCAGCTGCCGCCACCATAATGGCATATGATCACCAATTAACGAGAGCAGGACTGGAAGCAAAGATAAAGTCCTTCCCAACTCTGAAGCTTTTGGAAATTGAAGATGTGTGTTCAATCTACGAAATCTTGCAAGAGAAGGAAGACAATGTGAAGTCTACAAGGCCACGAGATTTCTCACCAGCCGATTGGAGCTCAGGAAGTGATTCTGCTAGAGAAACCGTGATCAGCTAG

Protein Analysis

302

Amino Acids

35.35

Weight (kDa)

5.41

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 76 - 174 1.4e-17 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 246
AccBSI CCGCTC 1 cut(s) 266
AccI GTMKAC 1 cut(s) 833
AciI CCGC 4 cut(s) 266, 334, 494, 687
AclWI GGATC 3 cut(s) 113, 518, 531
AcuI CTGAAG 1 cut(s) 782
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 1 cut(s) 246
AgeI ACCGGT 1 cut(s) 228
AgsI TTSAA 9 cut(s) 181, 281, 343, 449, 464, 577, 617, 779, 792
AhdI GACNNNNNGTC 1 cut(s) 671
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
AluBI AGCT 5 cut(s) 490, 683, 766, 870, 906
AluI AGCT 5 cut(s) 490, 683, 766, 870, 906
Alw21I GWGCWC 2 cut(s) 141, 872
AlwI GGATC 3 cut(s) 113, 518, 531
Ama87I CYCGRG 1 cut(s) 639
AoxI GGCC 1 cut(s) 839
ApeKI GCWGC 3 cut(s) 398, 680, 683
ArsI GACNNNNNNTTYG 2 cut(s) 731, 763
AsiGI ACCGGT 1 cut(s) 228
Asp700I GAANNNNTTC 2 cut(s) 373, 880
AspS9I GGNCC 1 cut(s) 336
AsuHPI GGTGA 2 cut(s) 701, 846
AvaI CYCGRG 1 cut(s) 639
AvaII GGWCC 1 cut(s) 336
BamHI GGATCC 1 cut(s) 523
BanII GRGCYC 1 cut(s) 872
BauI CACGAG 1 cut(s) 843
BbsI GAAGAC 1 cut(s) 825
Bbv12I GWGCWC 2 cut(s) 141, 872
BbvI GCAGC 3 cut(s) 385, 670, 692
BccI CCATC 3 cut(s) 465, 514, 676
BclI TGATCA 2 cut(s) 706, 900
BfaI CTAG 3 cut(s) 593, 888, 907
BglI GCCNNNNNGGC 1 cut(s) 56
BisI GCNGC 4 cut(s) 399, 681, 684, 687
BlsI GCNGC 4 cut(s) 400, 682, 685, 688
Bme18I GGWCC 1 cut(s) 336
BmeRI GACNNNNNGTC 1 cut(s) 671
BmeT110I CYCGRG 1 cut(s) 639
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 2 cut(s) 525, 569
BpiI GAAGAC 1 cut(s) 825
Bpu10I CCTNAGC 1 cut(s) 871
BpuEI CTTGAG 1 cut(s) 176
BsaWI WCCGGW 1 cut(s) 228
Bsc4I CCNNNNNNNGG 1 cut(s) 246
Bse118I RCCGGY 1 cut(s) 228
Bse1I ACTGG 2 cut(s) 319, 735
Bse3DI GCAATG 1 cut(s) 125
BseGI GGATG 1 cut(s) 525
BseLI CCNNNNNNNGG 1 cut(s) 246
BseMI GCAATG 1 cut(s) 125
BseMII CTCAG 2 cut(s) 379, 885
BseNI ACTGG 2 cut(s) 319, 735
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 3 cut(s) 385, 670, 692
BshFI GGCC 1 cut(s) 841
BshTI ACCGGT 1 cut(s) 228
BsiHKAI GWGCWC 2 cut(s) 141, 872
BsiHKCI CYCGRG 1 cut(s) 639
BsiSI CCGG 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 246
BsnI GGCC 1 cut(s) 841
BsoBI CYCGRG 1 cut(s) 639
Bsp1286I GDGCHC 2 cut(s) 141, 872
Bsp143I GATC 5 cut(s) 10, 118, 523, 706, 900
BspACI CCGC 4 cut(s) 266, 334, 494, 687
BspANI GGCC 1 cut(s) 841
BspCNI CTCAG 2 cut(s) 378, 884
BspLI GGNNCC 2 cut(s) 525, 569
BspPI GGATC 3 cut(s) 113, 518, 531
BspQI GCTCTTC 1 cut(s) 129
BsrBI CCGCTC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 228
BsrI ACTGG 2 cut(s) 319, 735
BssAI RCCGGY 1 cut(s) 228
BssMI GATC 5 cut(s) 10, 118, 523, 706, 900
BssSI CACGAG 1 cut(s) 843
Bst2BI CACGAG 1 cut(s) 843
Bst4CI ACNGT 1 cut(s) 898
Bst6I CTCTTC 1 cut(s) 129
BstC8I GCNNGC 3 cut(s) 237, 385, 492
BstDEI CTNAG 3 cut(s) 365, 676, 871
BstF5I GGATG 1 cut(s) 525
BstKTI GATC 5 cut(s) 13, 121, 526, 709, 903
BstMBI GATC 5 cut(s) 10, 118, 523, 706, 900
BstMWI GCNNNNNNNGC 3 cut(s) 56, 136, 686
BstV1I GCAGC 3 cut(s) 385, 670, 692
BstV2I GAAGAC 1 cut(s) 825
BstX2I RGATCY 1 cut(s) 523
BstXI CCANNNNNNTGG 2 cut(s) 697, 864
BstYI RGATCY 1 cut(s) 523
BsuRI GGCC 1 cut(s) 841
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 525
Cac8I GCNNGC 3 cut(s) 237, 385, 492
Cfr10I RCCGGY 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 336
Csp6I GTAC 1 cut(s) 310
CspAI ACCGGT 1 cut(s) 228
CviAII CATG 1 cut(s) 272
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 3 cut(s) 365, 676, 871
DpnI GATC 5 cut(s) 12, 120, 525, 708, 902
DpnII GATC 5 cut(s) 10, 118, 523, 706, 900
DriI GACNNNNNGTC 1 cut(s) 671
Eam1104I CTCTTC 1 cut(s) 129
Eam1105I GACNNNNNGTC 1 cut(s) 671
EarI CTCTTC 1 cut(s) 129
Ecl136II GAGCTC 1 cut(s) 870
Eco24I GRGCYC 1 cut(s) 872
Eco47I GGWCC 1 cut(s) 336
Eco53kI GAGCTC 1 cut(s) 870
Eco57I CTGAAG 1 cut(s) 782
Eco88I CYCGRG 1 cut(s) 639
EcoICRI GAGCTC 1 cut(s) 870
EcoT38I GRGCYC 1 cut(s) 872
FaeI CATG 1 cut(s) 275
FaiI YATR 9 cut(s) 96, 117, 273, 308, 441, 458, 695, 703, 705
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FatI CATG 1 cut(s) 271
FauNDI CATATG 1 cut(s) 703
FbaI TGATCA 2 cut(s) 706, 900
FblI GTMKAC 1 cut(s) 833
Fnu4HI GCNGC 4 cut(s) 399, 681, 684, 687
FokI GGATG 1 cut(s) 532
FriOI GRGCYC 1 cut(s) 872
Fsp4HI GCNGC 4 cut(s) 399, 681, 684, 687
FspBI CTAG 3 cut(s) 593, 888, 907
GluI GCNGC 4 cut(s) 399, 681, 684, 687
HaeIII GGCC 1 cut(s) 841
HapII CCGG 1 cut(s) 229
Hin1II CATG 1 cut(s) 275
HindIII AAGCTT 1 cut(s) 764
HinfI GANTC 4 cut(s) 177, 250, 621, 881
HpaII CCGG 1 cut(s) 229
HphI GGTGA 2 cut(s) 701, 846
Hpy166II GTNNAC 2 cut(s) 504, 834
Hpy188I TCNGA 6 cut(s) 70, 221, 287, 368, 436, 762
Hpy188III TCNNGA 1 cut(s) 873
Hpy8I GTNNAC 2 cut(s) 504, 834
HpyAV CCTTC 6 cut(s) 154, 188, 349, 611, 760, 808
HpyCH4III ACNGT 1 cut(s) 898
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 7 cut(s) 125, 130, 235, 401, 456, 658, 808
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 136, 686
HpyF3I CTNAG 3 cut(s) 365, 676, 871
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 1 cut(s) 275
Ksp22I TGATCA 2 cut(s) 706, 900
Kzo9I GATC 5 cut(s) 10, 118, 523, 706, 900
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 3 cut(s) 412, 487, 867
LpnPI CCDG 8 cut(s) 60, 135, 242, 332, 711, 716, 858, 870
Lsp1109I GCAGC 3 cut(s) 385, 670, 692
MaeI CTAG 3 cut(s) 593, 888, 907
MaeII ACGT 1 cut(s) 141
MalI GATC 5 cut(s) 12, 120, 525, 708, 902
MbiI CCGCTC 1 cut(s) 266
MboI GATC 5 cut(s) 10, 118, 523, 706, 900
MboII GAAGA 5 cut(s) 50, 146, 461, 791, 830
MflI RGATCY 1 cut(s) 523
MhlI GDGCHC 2 cut(s) 141, 872
MluCI AATT 4 cut(s) 281, 459, 713, 774
MnlI CCTC 4 cut(s) 64, 403, 510, 635
MroXI GAANNNNTTC 2 cut(s) 373, 880
MseI TTAA 4 cut(s) 20, 243, 509, 716
MslI CAYNNNNRTG 2 cut(s) 511, 695
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 1 cut(s) 229
MwoI GCNNNNNNNGC 3 cut(s) 56, 136, 686
NdeI CATATG 1 cut(s) 703
NdeII GATC 5 cut(s) 10, 118, 523, 706, 900
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 2 cut(s) 525, 569
PciSI GCTCTTC 1 cut(s) 129
PdmI GAANNNNTTC 2 cut(s) 373, 880
PfeI GAWTC 4 cut(s) 177, 250, 621, 881
PflMI CCANNNNNTGG 1 cut(s) 246
PinAI ACCGGT 1 cut(s) 228
PkrI GCNGC 4 cut(s) 400, 682, 685, 688
Psp124BI GAGCTC 1 cut(s) 872
PspN4I GGNNCC 2 cut(s) 525, 569
PspPI GGNCC 1 cut(s) 336
PsuI RGATCY 1 cut(s) 523
PvuII CAGCTG 1 cut(s) 683
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 2 cut(s) 511, 695
SacI GAGCTC 1 cut(s) 872
SapI GCTCTTC 1 cut(s) 129
SaqAI TTAA 4 cut(s) 20, 243, 509, 716
SatI GCNGC 4 cut(s) 399, 681, 684, 687
Sau3AI GATC 5 cut(s) 10, 118, 523, 706, 900
Sau96I GGNCC 1 cut(s) 336
SduI GDGCHC 2 cut(s) 141, 872
SetI ASST 8 cut(s) 75, 144, 492, 569, 685, 768, 872, 908
SinI GGWCC 1 cut(s) 336
SmiMI CAYNNNNRTG 2 cut(s) 511, 695
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 4 cut(s) 281, 459, 713, 774
SsiI CCGC 4 cut(s) 266, 334, 494, 687
SspMI CTAG 3 cut(s) 593, 888, 907
SstI GAGCTC 1 cut(s) 872
TaaI ACNGT 1 cut(s) 898
TaiI ACGT 1 cut(s) 144
TaqI TCGA 2 cut(s) 78, 664
TasI AATT 4 cut(s) 281, 459, 713, 774
TatI WGTACW 1 cut(s) 309
TauI GCSGC 1 cut(s) 689
TfiI GAWTC 4 cut(s) 177, 250, 621, 881
Tru1I TTAA 4 cut(s) 20, 243, 509, 716
Tru9I TTAA 4 cut(s) 20, 243, 509, 716
TseI GCWGC 3 cut(s) 398, 680, 683
TspDTI ATGAA 4 cut(s) 207, 260, 313, 547
Van91I CCANNNNNTGG 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 336
XmiI GTMKAC 1 cut(s) 833
XmnI GAANNNNTTC 2 cut(s) 373, 880
XspI CTAG 3 cut(s) 593, 888, 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.