Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003293

Physical Location & Seq

Genomic Coordinates Forward (+)

51871772 .. 51874006

Gene Structure 2235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0372300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCGACGAAGGAGTTGCAGAGCGTAGCGTTCGGTTCAAAAGAGGCGGCGGCTATGGTGAAGGAGCTGAGGGAAAGTTATGGCTCCGGTAAGACCAGAAGCTACGAGTGGAGAGTGTCGCAACTGAAGAACATTGAGAAAATGACGGAGTATCATGAACAGGAAATCATTGAGGCTCTTCGCTCCGACCTCTCCAAACCCGAATTTGAATCCTACATTCAAGAGATAGCGCTATTGAAGAACTCGTGTACATTGGCACTTAAAGAACTCGAGTCTTGGATGAAGCCTGAAAAGGTTAAATCTTCACCAGTCATTTTTCCGTCGTCAGCCGAAATAGTGCCCGAGCCTCTTGGTGTCGTACTAGTAATTTCAGCATGGAATTATCCTTTGTTGGTGACCCTTGATCCAGTTGTCGGAGCCATTGCGGCCGGTAATGCTGTGGTTGTAAAACCGTCGGAACTTGCTCTAGCCACATCGTCATTGCTTGCGAAACTATTAGGAGACTACATGGATAACTCTTGTGTTAGAGTTGTTGAGGGGGCTGTTGCTGAAACATCTGCACTATTAGAGCAAAAGTGGGACAAAATATGTTACACAGGCAACCGAAGAGTGGGACGGATAGTGATGGCTAGCGCCGTGAAGCACCTTACACCAGTTCTTTTAGAGCTCGGAGGAAAATGTCCAGCTGTGGTTGATTCTGGCATTGACTTACAAGTATATATGGATATCTTTCTTTTCCAAGTCCTGAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019866 GO:0022803 GO:0022804 GO:0022838 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031226 GO:0031967 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

251

Amino Acids

27.58

Weight (kDa)

5.44

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	12 - 246	3.4e-37	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27770 AT1G27770 AT1G27770 AT1G27770
fragaria_vesca	FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180
malus_domestica	MD08G1085200.v1.1 MD08G1085600.v1.1 MD12G1068300.v1.1 MD15G1070800.v1.1
prunus_persica	Prupe.1G423500_v2.0.a1 Prupe.1G423500_v2.0.a1 Prupe.1G423500_v2.0.a1 Prupe.1G423500_v2.0.a1 Prupe.1G423500_v2.0.a1
pyrus_communis	pycom08g07020 pycom15g06650 pycom15g06660
rosa_chinensis	RchiOBHm_Chr6g0309491
rosa_laevigata	RLG00000010561
rosa_multiflora	Rmu_sc0007283.1_g000007
rosa_roxburghii	Rroxscaffold_7G00159360
rosa_rugosa	Rorug06G0372300 Rorug06G0372400
rosa_samantha	Rh6AG485700 Rh6BG495000
rosa_wichuraiana	Rw6G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	47, 50, 425
AclWI	GGATC	1 cut(s)	398
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	146
AfaI	GTAC	2 cut(s)	250, 360
AfeI	AGCGCT	1 cut(s)	231
AfiI	CCNNNNNNNGG	2 cut(s)	413, 610
AgsI	TTSAA	4 cut(s)	39, 209, 221, 238
AhlI	ACTAGT	1 cut(s)	361
AluBI	AGCT	4 cut(s)	67, 102, 667, 686
AluI	AGCT	4 cut(s)	67, 102, 667, 686
Alw21I	GWGCWC	1 cut(s)	669
Alw26I	GTCTC	1 cut(s)	495
AlwI	GGATC	1 cut(s)	398
Ama87I	CYCGRG	2 cut(s)	269, 341
Aor51HI	AGCGCT	1 cut(s)	231
AoxI	GGCC	1 cut(s)	426
ApoI	RAATTY	1 cut(s)	203
AspLEI	GCGC	2 cut(s)	232, 635
AsuHPI	GGTGA	3 cut(s)	70, 297, 406
AsuNHI	GCTAGC	1 cut(s)	629
AvaI	CYCGRG	2 cut(s)	269, 341
BaeGI	GKGCMC	1 cut(s)	342
BanII	GRGCYC	1 cut(s)	669
BauI	CACGAG	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	669
BbvCI	CCTCAGC	1 cut(s)	68
BccI	CCATC	1 cut(s)	619
BceAI	ACGGC	1 cut(s)	620
BcgI	CGANNNNNNTGC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	495
BcuI	ACTAGT	1 cut(s)	361
BfaI	CTAG	3 cut(s)	362, 467, 630
BfoI	RGCGCY	2 cut(s)	233, 636
BglI	GCCNNNNNGGC	1 cut(s)	425
BisI	GCNGC	3 cut(s)	48, 51, 426
BlsI	GCNGC	3 cut(s)	49, 52, 427
BmeT110I	CYCGRG	2 cut(s)	269, 341
BmiI	GGNNCC	2 cut(s)	85, 418
BmtI	GCTAGC	1 cut(s)	633
Bpu10I	CCTNAGC	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	2 cut(s)	413, 610
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	3 cut(s)	308, 407, 653
Bse3DI	GCAATG	2 cut(s)	420, 479
BseGI	GGATG	1 cut(s)	285
BseLI	CCNNNNNNNGG	2 cut(s)	413, 610
BseMI	GCAATG	2 cut(s)	420, 479
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	3 cut(s)	308, 407, 653
BseSI	GKGCMC	1 cut(s)	342
BseX3I	CGGCCG	1 cut(s)	426
BsgI	GTGCAG	1 cut(s)	543
Bsh1285I	CGRYCG	1 cut(s)	429
BshFI	GGCC	1 cut(s)	428
BsiEI	CGRYCG	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	669
BsiHKCI	CYCGRG	2 cut(s)	269, 341
BsiSI	CCGG	2 cut(s)	87, 429
BslFI	GGGAC	2 cut(s)	593, 627
BslI	CCNNNNNNNGG	2 cut(s)	413, 610
BsmAI	GTCTC	1 cut(s)	495
BsmFI	GGGAC	2 cut(s)	593, 627
BsnI	GGCC	1 cut(s)	428
BsoBI	CYCGRG	2 cut(s)	269, 341
Bsp1286I	GDGCHC	2 cut(s)	342, 669
Bsp1407I	TGTACA	1 cut(s)	248
Bsp143I	GATC	1 cut(s)	403
BspACI	CCGC	3 cut(s)	47, 50, 425
BspANI	GGCC	1 cut(s)	428
BspCNI	CTCAG	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	2 cut(s)	85, 418
BspOI	GCTAGC	1 cut(s)	633
BspPI	GGATC	1 cut(s)	398
BspQI	GCTCTTC	1 cut(s)	183
BsrDI	GCAATG	2 cut(s)	420, 479
BsrFI	RCCGGY	1 cut(s)	428
BsrGI	TGTACA	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	308, 407, 653
BssAI	RCCGGY	1 cut(s)	428
BssMI	GATC	1 cut(s)	403
BssSI	CACGAG	1 cut(s)	244
Bst2BI	CACGAG	1 cut(s)	244
Bst4CI	ACNGT	1 cut(s)	453
Bst6I	CTCTTC	2 cut(s)	183, 601
BstAUI	TGTACA	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	486, 631
BstDEI	CTNAG	1 cut(s)	68
BstEII	GGTNACC	1 cut(s)	394
BstF5I	GGATG	1 cut(s)	285
BstH2I	RGCGCY	2 cut(s)	233, 636
BstHHI	GCGC	2 cut(s)	232, 635
BstKTI	GATC	1 cut(s)	406
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	1 cut(s)	403
BstMCI	CGRYCG	1 cut(s)	429
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 434
BstPI	GGTNACC	1 cut(s)	394
BstSLI	GKGCMC	1 cut(s)	342
BstZI	CGGCCG	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	428
BtsCI	GGATG	1 cut(s)	285
Cac8I	GCNNGC	2 cut(s)	486, 631
CciI	TCATGA	1 cut(s)	154
CfoI	GCGC	2 cut(s)	232, 635
Cfr10I	RCCGGY	1 cut(s)	428
Csp6I	GTAC	2 cut(s)	249, 359
CviAII	CATG	3 cut(s)	155, 375, 508
CviQI	GTAC	2 cut(s)	249, 359
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	1 cut(s)	405
DpnII	GATC	1 cut(s)	403
EaeI	YGGCCR	1 cut(s)	426
EagI	CGGCCG	1 cut(s)	426
Eam1104I	CTCTTC	2 cut(s)	183, 601
EarI	CTCTTC	2 cut(s)	183, 601
Ecl136II	GAGCTC	1 cut(s)	667
EclXI	CGGCCG	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	669
Eco32I	GATATC	1 cut(s)	727
Eco47III	AGCGCT	1 cut(s)	231
Eco52I	CGGCCG	1 cut(s)	426
Eco53kI	GAGCTC	1 cut(s)	667
Eco57I	CTGAAG	1 cut(s)	146
Eco88I	CYCGRG	2 cut(s)	269, 341
Eco91I	GGTNACC	1 cut(s)	394
EcoICRI	GAGCTC	1 cut(s)	667
EcoO65I	GGTNACC	1 cut(s)	394
EcoRV	GATATC	1 cut(s)	727
EcoT38I	GRGCYC	1 cut(s)	669
FaeI	CATG	3 cut(s)	158, 378, 511
FaiI	YATR	9 cut(s)	56, 81, 156, 376, 509, 589, 718, 720, 722
FaqI	GGGAC	2 cut(s)	593, 627
FatI	CATG	3 cut(s)	154, 374, 507
Fnu4HI	GCNGC	3 cut(s)	48, 51, 426
FokI	GGATG	1 cut(s)	292
FriOI	GRGCYC	1 cut(s)	669
Fsp4HI	GCNGC	3 cut(s)	48, 51, 426
FspBI	CTAG	3 cut(s)	362, 467, 630
GlaI	GCGC	2 cut(s)	231, 634
GluI	GCNGC	3 cut(s)	48, 51, 426
HaeII	RGCGCY	2 cut(s)	233, 636
HaeIII	GGCC	1 cut(s)	428
HapII	CCGG	2 cut(s)	87, 429
HhaI	GCGC	2 cut(s)	232, 635
Hin1II	CATG	3 cut(s)	158, 378, 511
Hin6I	GCGC	2 cut(s)	230, 633
HinP1I	GCGC	2 cut(s)	230, 633
HinfI	GANTC	3 cut(s)	209, 272, 695
HpaII	CCGG	2 cut(s)	87, 429
HphI	GGTGA	3 cut(s)	70, 297, 406
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	4 cut(s)	187, 416, 457, 671
Hpy188III	TCNNGA	3 cut(s)	155, 221, 745
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	3 cut(s)	10, 325, 457
HpyAV	CCTTC	2 cut(s)	4, 55
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4V	TGCA	2 cut(s)	19, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 434
HpyF3I	CTNAG	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	158, 378, 511
HspAI	GCGC	2 cut(s)	230, 633
Kzo9I	GATC	1 cut(s)	403
LguI	GCTCTTC	1 cut(s)	183
LmnI	GCTCC	4 cut(s)	64, 89, 188, 416
MaeI	CTAG	3 cut(s)	362, 467, 630
MaeIII	GTNAC	2 cut(s)	394, 590
MalI	GATC	1 cut(s)	405
MboI	GATC	1 cut(s)	403
MboII	GAAGA	5 cut(s)	139, 170, 250, 294, 618
MhlI	GDGCHC	2 cut(s)	342, 669
MluCI	AATT	3 cut(s)	203, 366, 379
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	3 cut(s)	210, 394, 435
MnlI	CCTC	7 cut(s)	37, 63, 166, 200, 357, 529, 665
MseI	TTAA	2 cut(s)	261, 297
MspA1I	CMGCKG	1 cut(s)	686
MspI	CCGG	2 cut(s)	87, 429
MwoI	GCNNNNNNNGC	2 cut(s)	425, 434
NdeII	GATC	1 cut(s)	403
NheI	GCTAGC	1 cut(s)	629
NlaIII	CATG	3 cut(s)	158, 378, 511
NlaIV	GGNNCC	2 cut(s)	85, 418
NmuCI	GTSAC	1 cut(s)	394
PaeR7I	CTCGAG	1 cut(s)	269
PagI	TCATGA	1 cut(s)	154
PciSI	GCTCTTC	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	209, 695
PkrI	GCNGC	3 cut(s)	49, 52, 427
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	669
PspEI	GGTNACC	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	85, 418
PspXI	VCTCGAGB	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	686
RsaI	GTAC	2 cut(s)	250, 360
RsaNI	GTAC	2 cut(s)	249, 359
SacI	GAGCTC	1 cut(s)	669
SapI	GCTCTTC	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	261, 297
SatI	GCNGC	3 cut(s)	48, 51, 426
Sau3AI	GATC	1 cut(s)	403
SchI	GAGTC	1 cut(s)	281
SduI	GDGCHC	2 cut(s)	342, 669
SetI	ASST	7 cut(s)	69, 104, 192, 297, 648, 669, 688
Sfr274I	CTCGAG	1 cut(s)	269
SlaI	CTCGAG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SpeI	ACTAGT	1 cut(s)	361
Sse9I	AATT	3 cut(s)	203, 366, 379
SsiI	CCGC	3 cut(s)	47, 50, 425
SspMI	CTAG	3 cut(s)	362, 467, 630
SstI	GAGCTC	1 cut(s)	669
TaaI	ACNGT	1 cut(s)	453
TaqI	TCGA	1 cut(s)	270
TasI	AATT	3 cut(s)	203, 366, 379
TatI	WGTACW	1 cut(s)	248
TauI	GCSGC	3 cut(s)	50, 53, 428
TfiI	GAWTC	2 cut(s)	209, 695
Tru1I	TTAA	2 cut(s)	261, 297
Tru9I	TTAA	2 cut(s)	261, 297
TseFI	GTSAC	1 cut(s)	394
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	2 cut(s)	171, 296
TspGWI	ACGGA	3 cut(s)	161, 309, 631
XapI	RAATTY	1 cut(s)	203
XhoI	CTCGAG	1 cut(s)	269
XspI	CTAG	3 cut(s)	362, 467, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.