Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003293

Physical Location & Seq

Genomic Coordinates Reverse (-)

69643658 .. 69650729

Gene Structure 7072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG495000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2904 bp

ATGTTTATAAAACAAAAAACAGCACAGTTCTGTTTTATTCATCTTTTTATATGTTTTTCAAATTTGATCCAACCTTCTCTGTGTGCAGGACTAAAATTTTCCAGTGATTACACTGTACCTGAGGAAGTCAAAGCTGCAGGTTTTCAAATTTGTGCTGATGAGTTGGCATCCATTGTTGAAGGTCGTGATGTGAAGAAGCTCAAGATGCATGATGGTGTTATGGGTCTAGTAGGCAAGGTTGGAACATCAATTGTCGATGGCATTTCAACCTCTGAGCAATTGATCAATGCAAGAAAGGAAATTTATGGAGTTAATAAGTTCACTGAGAGCCCATCTCGTGGATTTTTACTATTTGTATGGGAAGCCCTTCAAGACACCACCCTCATGATACTTGGAGTTTGTGCCTTTGTCTCTCTGCTTGTTGGGATAATGACAGAAGGATGGCCAAAGGGTGCCCATGATGGACTTGGAATTGTTGCGAGCATTTTGCTTGTTGTATTTGTGACTGCTACTAGCGATTATAAGCAGTCCCTGCAGTTCAAGGACTTGGACAAGGAGAAGAAAAAGATTACAGTTCATGTTACTAGAAATGGATTCAGACAGAAGTTGTCAATATATGATTTACTTCCTGGTGACATTGTTCATCTCAATATTGGAGATCTGGTCCCAGCTGATGGACTTTTCGTTTCTGGCTTTTCTATGCTGATAAATGAATCCAGCTTAACTGGAGAGAGTGAACCGGTTAATATTAATGATTTAAATCCTTTTCTCCTCTCTGGAACTAAAGTTCAAGATGGATCCTGCAAGATGCTTGTGACTACTGTTGGAATGAGAACCCAGTGGGGTAAATTGATGGCTACTCTTACTGAAGGTGGAGATGATGAAACCCCCTTGCAGGTGAAACTAAATGGTGTGGCAACTATCATTGGTAAAATAGGCCTGTTTTTTGCAGTAGTGACATTTGCTGTATTAGTTCAAGGATTGTTCAGCCGCAAGCTTCAAGAAGGATTAGTATGGTCCGGAGACGATGCATTGGTAATTTTGGAATTTTTCGCTATAGCTGTTACAATTGTAGTTGTTGCCGTTCCTGAAGGTTTGCCTTTGGCTGTAACATTAAGCCTTGCTTTTGCCATGAAGAAGATGATGAACGATAAGGCACTTGTCCGACATTTGGCGGCTTGTGAGACAATGGGATCTGCCACAACTATCTGTAGTGACAAGACTGGAACACTAACAACTAACCGGATGACGGTTGTAAAAACTTGCATTTGTTTGAAAATCAAAGACGTGGCTAGCTCTGCGAAATCATCTGACCTCTGCTCTGAAATACCTGATGCTACTTTGAAAGTTCTACTTCAGTGCATATTTAACAATACTGGAGGTGACATTGTTAAAAACAAAGATGACAAGATTGAGATACTGGGAACACCCACTGACGCTGCTGTTTTGGGATTTGGGATGTCGCTAGGTGGAGATTTCAAGGCAGAACGACAAGCATCAAAACTTGTGAAAGTTGAGCCCTTCAATTCTGTGAAGAAACGGATGGCTGTTGTTCTACAGCTTCCTGAAGGTGGCTTCCGAGTGCATTGTAAAGGTGCTTCTGAGATAATTTTAGCTGCATGTGACAAATGCATGGGTCCAAATGGGGAGGTAATTCCCCTTGATATAGCTTCCATCAATCTTTTGAATGGTATCATAGAACAGTTTGCTAGTGAAGCCCTTAGAACTCTATGCCTGGCATACATGGACATTGGAAGTGAGTTCTCTGCTGAGAGTCCTATTCCTGTCAATGGATATACATGTATAGGAATTGTGGGTATTAAAGATCCAGTTCGTCCTGGTGTCAAGGAGTCTGTTGAGATTTGTAGGTCTGCTGGTATTACTGTCCGAATGGTTACTGGTGATAACATAAACACTGCAAAAGCAATTGCCAGAGAATGTGGAATTTTGACTGATGGAGGTTTAGCAATTGAAGGCCCAGAATTTCGTGAAAAGAGTGAGGAGGAATTACAAAAAATTATTCCAAAACTTCAGGTAATGGCTCGATCTTCGCCAATGGATAAGCATACCCTTGTGAAACACTTGAGAACCACTTTTGGAGAAGTTGTTGCAGTGACAGGTGATGGTACAAATGATGCTCCAGCACTTCATGAAGCTGATATAGGACTTGCAATGGGAATTGCTGGAACGGAGGTGGCTAAAGAGAGTGCTGATGTGATAATTCTGGATGATAACTTCTCTACAATTGTGACCGTGGCTAAATGGGGGCGTTCAGTTTATTTGAACATACAGAAATTTGTTCAGTTCCAGCTAACAGTTAATGTGGTTGCTCTTGTAGTCAACTTCACTTCAGCATGTTTAACTGGAAGAGCTCCCCTTACCGCTGTTCAGCTTCTCTGGGTCAACATGATCATGGACACTCTAGGAGCCCTTGCATTAGCCACTGAGCCCCCTAATGATGATTTGATGAAGAGAACACCAGTTGGCAGGACAGGAAACTTCATTACTAATGTGATGTGGAGAAATATCTTGGGGCAGTCGCTGTATCAGTTTGTGGTAATATGGTATCTGCAGACTAGAGGAAAAGAAGCTTTTCAGCTTGTTGGCCCAGATTCAGATTTGATATTAAACACCCTGATTTTCAACTCATTTGTCTTCTGTCAGGCTTTCAATGAGATCAGTTCTAGAGAAATGGAGAAGATCAATGTCTTCAAAGGCATACTGCAGAATTATGTGTTTGTGACTGTTCTCTCCTGCACTATAATCTTCCAAGTCATAATCATCGAGTTCCTGGGTACATTTGCAAGCACATCTCCTCTCACTTGGCAGCAGTGGTTTGTCAGTGTTACACTTGGGTTCCTGGGCATGCCTATTTCAGCAGCTTTGAAATTTATTCCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019866 GO:0022803 GO:0022804 GO:0022838 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031226 GO:0031967 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

967

Amino Acids

104.78

Weight (kDa)

5.64

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	72 - 138	2.2e-08	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	189 - 287	4.8e-20	P-type ATPase actuator domain
Cation_ATPase	PF13246	454 - 613	3.9e-30	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	585 - 720	5.4e-12	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	791 - 965	1.1e-40	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27770 AT1G27770 AT1G27770 AT1G27770
fragaria_vesca	FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180
malus_domestica	MD08G1085200.v1.1 MD08G1085600.v1.1 MD12G1068300.v1.1 MD15G1070800.v1.1
prunus_persica	Prupe.1G423500_v2.0.a1 Prupe.1G423500_v2.0.a1 Prupe.1G423500_v2.0.a1 Prupe.1G423500_v2.0.a1 Prupe.1G423500_v2.0.a1
pyrus_communis	pycom08g07020 pycom15g06650 pycom15g06660
rosa_chinensis	RchiOBHm_Chr6g0309491
rosa_laevigata	RLG00000010561
rosa_multiflora	Rmu_sc0007283.1_g000007
rosa_roxburghii	Rroxscaffold_7G00159360
rosa_rugosa	Rorug06G0372300 Rorug06G0372400
rosa_samantha	Rh6AG485700 Rh6BG495000
rosa_wichuraiana	Rw6G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	8, 522
AarI	CACCTGC	1 cut(s)	886
Acc36I	ACCTGC	2 cut(s)	128, 886
AccB1I	GGYRCC	1 cut(s)	452
AccB7I	CCANNNNNTGG	2 cut(s)	338, 674
AccIII	TCCGGA	1 cut(s)	1019
AciI	CCGC	3 cut(s)	991, 1175, 2382
AclWI	GGATC	5 cut(s)	61, 792, 805, 1201, 1820
AcoI	YGGCCR	1 cut(s)	443
AcsI	RAATTY	9 cut(s)	61, 95, 147, 300, 1046, 1944, 1982, 2294, 2888
AcuI	CTGAAG	6 cut(s)	888, 1110, 1340, 1587, 2015, 2334
AfaI	GTAC	3 cut(s)	117, 2128, 2797
AfiI	CCNNNNNNNGG	7 cut(s)	338, 674, 895, 1171, 1249, 1571, 1790
AflIII	ACRYGT	1 cut(s)	1799
AgeI	ACCGGT	1 cut(s)	739
AjiI	CACGTC	1 cut(s)	1288
AjnI	CCWGG	5 cut(s)	628, 1734, 1837, 2790, 2859
AloI	GAACNNNNNNTCC	2 cut(s)	771, 803
Alw21I	GWGCWC	1 cut(s)	2374
Alw26I	GTCTC	3 cut(s)	415, 1017, 1178
AlwI	GGATC	5 cut(s)	61, 792, 805, 1201, 1820
AlwNI	CAGNNNCTG	2 cut(s)	532, 2542
Aor13HI	TCCGGA	1 cut(s)	1019
AoxI	GGCC	4 cut(s)	443, 937, 1975, 2605
ApeKI	GCWGC	5 cut(s)	134, 1439, 1616, 2827, 2879
ApoI	RAATTY	9 cut(s)	61, 95, 147, 300, 1046, 1944, 1982, 2294, 2888
AseI	ATTAAT	1 cut(s)	750
AsiGI	ACCGGT	1 cut(s)	739
Asp700I	GAANNNNTTC	2 cut(s)	366, 2592
AspS9I	GGNCC	5 cut(s)	664, 1017, 1637, 1976, 2606
AsuHPI	GGTGA	5 cut(s)	644, 910, 1394, 1913, 2132
AsuNHI	GCTAGC	1 cut(s)	1292
AvaII	GGWCC	3 cut(s)	664, 1017, 1637
AxyI	CCTNAGG	1 cut(s)	120
BaeGI	GKGCMC	1 cut(s)	457
BalI	TGGCCA	1 cut(s)	445
BamHI	GGATCC	1 cut(s)	797
BanI	GGYRCC	1 cut(s)	452
BanII	GRGCYC	5 cut(s)	332, 1521, 2374, 2431, 2451
BarI	GAAGNNNNNNTAC	2 cut(s)	1582, 1614
BauI	CACGAG	1 cut(s)	336
BbsI	GAAGAC	2 cut(s)	2647, 2701
Bbv12I	GWGCWC	1 cut(s)	2374
BbvI	GCAGC	5 cut(s)	121, 1426, 1603, 2839, 2891
BceAI	ACGGC	1 cut(s)	1067
BcgI	CGANNNNNNTGC	2 cut(s)	469, 503
BciT130I	CCWGG	5 cut(s)	630, 1736, 1839, 2792, 2861
BclI	TGATCA	2 cut(s)	282, 2409
BcoDI	GTCTC	3 cut(s)	415, 1017, 1178
BfaI	CTAG	9 cut(s)	227, 513, 585, 1293, 1466, 1710, 2423, 2577, 2685
BfmI	CTRYAG	7 cut(s)	135, 533, 1056, 1210, 1556, 2570, 2723
BfuAI	ACCTGC	2 cut(s)	128, 886
BglII	AGATCT	1 cut(s)	658
BisI	GCNGC	7 cut(s)	135, 991, 1176, 1440, 1617, 2828, 2880
BlsI	GCNGC	7 cut(s)	136, 992, 1177, 1441, 1618, 2829, 2881
Bme1390I	CCNGG	5 cut(s)	630, 1736, 1839, 2792, 2861
Bme18I	GGWCC	3 cut(s)	664, 1017, 1637
BmgBI	CACGTC	1 cut(s)	1288
BmgT120I	GGNCC	5 cut(s)	664, 1017, 1637, 1976, 2606
BmiI	GGNNCC	6 cut(s)	454, 666, 799, 1638, 2428, 2858
BmrFI	CCNGG	5 cut(s)	630, 1736, 1839, 2792, 2861
BmrI	ACTGGG	2 cut(s)	832, 1430
BmsI	GCATC	7 cut(s)	176, 195, 798, 1018, 1324, 1505, 2125
BmtI	GCTAGC	1 cut(s)	1296
BmuI	ACTGGG	2 cut(s)	832, 1430
BpiI	GAAGAC	2 cut(s)	2647, 2701
BplI	GAGNNNNNCTC	2 cut(s)	319, 351
BpmI	CTGGAG	3 cut(s)	747, 1398, 2124
BpuEI	CTTGAG	2 cut(s)	185, 2104
BsaBI	GATNNNNATC	1 cut(s)	759
BsaJI	CCNNGG	3 cut(s)	2253, 2791, 2860
BsaWI	WCCGGW	3 cut(s)	739, 1019, 1242
BsaXI	ACNNNNNCTCC	4 cut(s)	648, 678, 2091, 2121
Bsc4I	CCNNNNNNNGG	7 cut(s)	338, 674, 895, 1171, 1249, 1571, 1790
Bse118I	RCCGGY	1 cut(s)	739
Bse21I	CCTNAGG	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	2178
Bse8I	GATNNNNATC	1 cut(s)	759
BseAI	TCCGGA	1 cut(s)	1019
BseBI	CCWGG	5 cut(s)	630, 1736, 1839, 2792, 2861
BseDI	CCNNGG	3 cut(s)	2253, 2791, 2860
BseGI	GGATG	6 cut(s)	167, 446, 1251, 1464, 1548, 2233
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	7 cut(s)	338, 674, 895, 1171, 1249, 1571, 1790
BseMI	GCAATG	1 cut(s)	2178
BseMII	CTCAG	6 cut(s)	111, 264, 315, 1593, 1761, 2436
BseRI	GAGGAG	3 cut(s)	761, 2015, 2805
BseSI	GKGCMC	1 cut(s)	457
BseXI	GCAGC	5 cut(s)	121, 1426, 1603, 2839, 2891
BseYI	CCCAGC	1 cut(s)	667
BsgI	GTGCAG	2 cut(s)	105, 2740
BshFI	GGCC	4 cut(s)	445, 939, 1977, 2607
BshNI	GGYRCC	1 cut(s)	452
BshTI	ACCGGT	1 cut(s)	739
BsiHKAI	GWGCWC	1 cut(s)	2374
BsiSI	CCGG	3 cut(s)	740, 1020, 1243
BslFI	GGGAC	2 cut(s)	514, 650
BslI	CCNNNNNNNGG	7 cut(s)	338, 674, 895, 1171, 1249, 1571, 1790
BsmAI	GTCTC	3 cut(s)	415, 1017, 1178
BsmBI	CGTCTC	1 cut(s)	1017
BsmFI	GGGAC	2 cut(s)	514, 650
BsnI	GGCC	4 cut(s)	445, 939, 1977, 2607
Bsp1286I	GDGCHC	6 cut(s)	332, 457, 1521, 2374, 2431, 2451
Bsp13I	TCCGGA	1 cut(s)	1019
BspACI	CCGC	3 cut(s)	991, 1175, 2382
BspANI	GGCC	4 cut(s)	445, 939, 1977, 2607
BspCNI	CTCAG	6 cut(s)	112, 265, 316, 1594, 1762, 2437
BspEI	TCCGGA	1 cut(s)	1019
BspHI	TCATGA	2 cut(s)	384, 2149
BspLI	GGNNCC	6 cut(s)	454, 666, 799, 1638, 2428, 2858
BspMAI	CTGCAG	4 cut(s)	139, 537, 2574, 2727
BspMI	ACCTGC	2 cut(s)	128, 886
BspOI	GCTAGC	1 cut(s)	1296
BspPI	GGATC	5 cut(s)	61, 792, 805, 1201, 1820
BspQI	GCTCTTC	1 cut(s)	2362
BspT107I	GGYRCC	1 cut(s)	452
BsrDI	GCAATG	1 cut(s)	2178
BsrFI	RCCGGY	1 cut(s)	739
BssAI	RCCGGY	1 cut(s)	739
BssECI	CCNNGG	3 cut(s)	2253, 2791, 2860
BssSI	CACGAG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	336
Bst2UI	CCWGG	5 cut(s)	630, 1736, 1839, 2792, 2861
Bst6I	CTCTTC	2 cut(s)	2362, 2465
BstAPI	GCANNNNNTGC	1 cut(s)	532
BstC8I	GCNNGC	5 cut(s)	481, 995, 1294, 2806, 2867
BstDEI	CTNAG	7 cut(s)	120, 273, 324, 1602, 1721, 1770, 2445
BstDSI	CCRYGG	1 cut(s)	2253
BstF5I	GGATG	6 cut(s)	167, 446, 1251, 1464, 1548, 2233
BstMAI	GTCTC	3 cut(s)	415, 1017, 1178
BstMWI	GCNNNNNNNGC	4 cut(s)	205, 532, 1298, 1715
BstNI	CCWGG	5 cut(s)	630, 1736, 1839, 2792, 2861
BstNSI	RCATGY	4 cut(s)	1623, 1803, 2358, 2869
BstSCI	CCNGG	5 cut(s)	628, 1734, 1837, 2790, 2859
BstSFI	CTRYAG	7 cut(s)	135, 533, 1056, 1210, 1556, 2570, 2723
BstSLI	GKGCMC	1 cut(s)	457
BstV1I	GCAGC	5 cut(s)	121, 1426, 1603, 2839, 2891
BstV2I	GAAGAC	2 cut(s)	2647, 2701
BstX2I	RGATCY	4 cut(s)	658, 797, 1193, 1825
BstYI	RGATCY	4 cut(s)	658, 797, 1193, 1825
Bsu36I	CCTNAGG	1 cut(s)	120
BsuRI	GGCC	4 cut(s)	445, 939, 1977, 2607
BtgI	CCRYGG	1 cut(s)	2253
BtrI	CACGTC	1 cut(s)	1288
BtsCI	GGATG	6 cut(s)	167, 446, 1251, 1464, 1548, 2233
BtsI	GCAGTG	3 cut(s)	1914, 2118, 2837
BveI	ACCTGC	2 cut(s)	128, 886
Cac8I	GCNNGC	5 cut(s)	481, 995, 1294, 2806, 2867
CaiI	CAGNNNCTG	2 cut(s)	532, 2542
CciI	TCATGA	2 cut(s)	384, 2149
Cfr10I	RCCGGY	1 cut(s)	739
Cfr13I	GGNCC	5 cut(s)	664, 1017, 1637, 1976, 2606
CseI	GACGC	1 cut(s)	1445
Csp6I	GTAC	3 cut(s)	116, 2127, 2796
CspAI	ACCGGT	1 cut(s)	739
CviQI	GTAC	3 cut(s)	116, 2127, 2796
DdeI	CTNAG	7 cut(s)	120, 273, 324, 1602, 1721, 1770, 2445
DraI	TTTAAA	1 cut(s)	759
EaeI	YGGCCR	1 cut(s)	443
Eam1104I	CTCTTC	2 cut(s)	2362, 2465
EarI	CTCTTC	2 cut(s)	2362, 2465
Ecl136II	GAGCTC	1 cut(s)	2372
Eco147I	AGGCCT	1 cut(s)	939
Eco24I	GRGCYC	5 cut(s)	332, 1521, 2374, 2431, 2451
Eco47I	GGWCC	3 cut(s)	664, 1017, 1637
Eco53kI	GAGCTC	1 cut(s)	2372
Eco57I	CTGAAG	6 cut(s)	888, 1110, 1340, 1587, 2015, 2334
Eco81I	CCTNAGG	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	2372
EcoRII	CCWGG	5 cut(s)	628, 1734, 1837, 2790, 2859
EcoT22I	ATGCAT	3 cut(s)	210, 1033, 1634
EcoT38I	GRGCYC	5 cut(s)	332, 1521, 2374, 2431, 2451
Esp3I	CGTCTC	1 cut(s)	1017
FalI	AAGNNNNNCTT	4 cut(s)	1108, 1140, 1338, 1370
FaqI	GGGAC	2 cut(s)	514, 650
FbaI	TGATCA	2 cut(s)	282, 2409
Fnu4HI	GCNGC	7 cut(s)	135, 991, 1176, 1440, 1617, 2828, 2880
FokI	GGATG	6 cut(s)	154, 453, 1258, 1471, 1555, 2240
FriOI	GRGCYC	5 cut(s)	332, 1521, 2374, 2431, 2451
Fsp4HI	GCNGC	7 cut(s)	135, 991, 1176, 1440, 1617, 2828, 2880
FspBI	CTAG	9 cut(s)	227, 513, 585, 1293, 1466, 1710, 2423, 2577, 2685
GluI	GCNGC	7 cut(s)	135, 991, 1176, 1440, 1617, 2828, 2880
GsaI	CCCAGC	1 cut(s)	671
GsuI	CTGGAG	3 cut(s)	747, 1398, 2124
HaeIII	GGCC	4 cut(s)	445, 939, 1977, 2607
HapII	CCGG	3 cut(s)	740, 1020, 1243
HgaI	GACGC	1 cut(s)	1445
HincII	GTYRAC	2 cut(s)	2341, 2404
HindII	GTYRAC	2 cut(s)	2341, 2404
HindIII	AAGCTT	2 cut(s)	995, 2589
HinfI	GANTC	5 cut(s)	594, 713, 1774, 1850, 2612
HpaII	CCGG	3 cut(s)	740, 1020, 1243
HphI	GGTGA	5 cut(s)	644, 910, 1394, 1913, 2132
Hpy166II	GTNNAC	4 cut(s)	321, 737, 2341, 2404
Hpy188I	TCNGA	9 cut(s)	274, 599, 1166, 1312, 1324, 1580, 1603, 1889, 2617
Hpy8I	GTNNAC	4 cut(s)	321, 737, 2341, 2404
HpyCH4IV	ACGT	1 cut(s)	1287
HpyF10VI	GCNNNNNNNGC	4 cut(s)	205, 532, 1298, 1715
HpyF3I	CTNAG	7 cut(s)	120, 273, 324, 1602, 1721, 1770, 2445
HpySE526I	ACGT	1 cut(s)	1287
Kpn2I	TCCGGA	1 cut(s)	1019
Ksp22I	TGATCA	2 cut(s)	282, 2409
LguI	GCTCTTC	1 cut(s)	2362
LmnI	GCTCC	3 cut(s)	2143, 2377, 2426
Lsp1109I	GCAGC	5 cut(s)	121, 1426, 1603, 2839, 2891
LweI	GCATC	7 cut(s)	176, 195, 798, 1018, 1324, 1505, 2125
MaeI	CTAG	9 cut(s)	227, 513, 585, 1293, 1466, 1710, 2423, 2577, 2685
MaeII	ACGT	1 cut(s)	1287
MfeI	CAATTG	6 cut(s)	249, 278, 1068, 1926, 1968, 2244
MflI	RGATCY	4 cut(s)	658, 797, 1193, 1825
MhlI	GDGCHC	6 cut(s)	332, 457, 1521, 2374, 2431, 2451
MlsI	TGGCCA	1 cut(s)	445
MluNI	TGGCCA	1 cut(s)	445
MlyI	GAGTC	2 cut(s)	1783, 1859
MmeI	TCCRAC	4 cut(s)	94, 220, 805, 1189
Mox20I	TGGCCA	1 cut(s)	445
Mph1103I	ATGCAT	3 cut(s)	210, 1033, 1634
MroI	TCCGGA	1 cut(s)	1019
MroXI	GAANNNNTTC	2 cut(s)	366, 2592
MscI	TGGCCA	1 cut(s)	445
MslI	CAYNNNNRTG	3 cut(s)	213, 383, 2411
Msp20I	TGGCCA	1 cut(s)	445
MspA1I	CMGCKG	2 cut(s)	671, 2384
MspI	CCGG	3 cut(s)	740, 1020, 1243
MspR9I	CCNGG	5 cut(s)	630, 1736, 1839, 2792, 2861
MunI	CAATTG	6 cut(s)	249, 278, 1068, 1926, 1968, 2244
MvaI	CCWGG	5 cut(s)	630, 1736, 1839, 2792, 2861
MwoI	GCNNNNNNNGC	4 cut(s)	205, 532, 1298, 1715
NheI	GCTAGC	1 cut(s)	1292
NlaIV	GGNNCC	6 cut(s)	454, 666, 799, 1638, 2428, 2858
NsiI	ATGCAT	3 cut(s)	210, 1033, 1634
NspI	RCATGY	4 cut(s)	1623, 1803, 2358, 2869
PaeI	GCATGC	1 cut(s)	2869
PagI	TCATGA	2 cut(s)	384, 2149
PaqCI	CACCTGC	1 cut(s)	886
PceI	AGGCCT	1 cut(s)	939
PciI	ACATGT	1 cut(s)	1799
PciSI	GCTCTTC	1 cut(s)	2362
PdmI	GAANNNNTTC	2 cut(s)	366, 2592
PfeI	GAWTC	3 cut(s)	594, 713, 2612
PflMI	CCANNNNNTGG	2 cut(s)	338, 674
PinAI	ACCGGT	1 cut(s)	739
PkrI	GCNGC	7 cut(s)	136, 992, 1177, 1441, 1618, 2829, 2881
PleI	GAGTC	2 cut(s)	1782, 1858
PpsI	GAGTC	2 cut(s)	1782, 1858
PscI	ACATGT	1 cut(s)	1799
PshBI	ATTAAT	1 cut(s)	750
PsiI	TTATAA	2 cut(s)	8, 522
Psp124BI	GAGCTC	1 cut(s)	2374
Psp6I	CCWGG	5 cut(s)	628, 1734, 1837, 2790, 2859
PspFI	CCCAGC	1 cut(s)	667
PspGI	CCWGG	5 cut(s)	628, 1734, 1837, 2790, 2859
PspN4I	GGNNCC	6 cut(s)	454, 666, 799, 1638, 2428, 2858
PspPI	GGNCC	5 cut(s)	664, 1017, 1637, 1976, 2606
PstI	CTGCAG	4 cut(s)	139, 537, 2574, 2727
PstNI	CAGNNNCTG	2 cut(s)	532, 2542
PsuI	RGATCY	4 cut(s)	658, 797, 1193, 1825
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	3 cut(s)	117, 2128, 2797
RsaNI	GTAC	3 cut(s)	116, 2127, 2796
RseI	CAYNNNNRTG	3 cut(s)	213, 383, 2411
SacI	GAGCTC	1 cut(s)	2374
SapI	GCTCTTC	1 cut(s)	2362
SatI	GCNGC	7 cut(s)	135, 991, 1176, 1440, 1617, 2828, 2880
Sau96I	GGNCC	5 cut(s)	664, 1017, 1637, 1976, 2606
SchI	GAGTC	2 cut(s)	1783, 1859
ScrFI	CCNGG	5 cut(s)	630, 1736, 1839, 2792, 2861
SduI	GDGCHC	6 cut(s)	332, 457, 1521, 2374, 2431, 2451
SfaNI	GCATC	7 cut(s)	176, 195, 798, 1018, 1324, 1505, 2125
SfcI	CTRYAG	7 cut(s)	135, 533, 1056, 1210, 1556, 2570, 2723
SinI	GGWCC	3 cut(s)	664, 1017, 1637
SmiI	ATTTAAAT	1 cut(s)	759
SmiMI	CAYNNNNRTG	3 cut(s)	213, 383, 2411
SmlI	CTYRAG	2 cut(s)	200, 2083
SmoI	CTYRAG	2 cut(s)	200, 2083
SphI	GCATGC	1 cut(s)	2869
SseBI	AGGCCT	1 cut(s)	939
SsiI	CCGC	3 cut(s)	991, 1175, 2382
SspI	AATATT	2 cut(s)	652, 748
SspMI	CTAG	9 cut(s)	227, 513, 585, 1293, 1466, 1710, 2423, 2577, 2685
SstI	GAGCTC	1 cut(s)	2374
StuI	AGGCCT	1 cut(s)	939
StyD4I	CCNGG	5 cut(s)	628, 1734, 1837, 2790, 2859
SwaI	ATTTAAAT	1 cut(s)	759
TaiI	ACGT	1 cut(s)	1290
TaqI	TCGA	3 cut(s)	255, 2044, 2784
TauI	GCSGC	2 cut(s)	993, 1178
TfiI	GAWTC	3 cut(s)	594, 713, 2612
TseI	GCWGC	5 cut(s)	134, 1439, 1616, 2827, 2879
TspGWI	ACGGA	2 cut(s)	1555, 2204
Van91I	CCANNNNNTGG	2 cut(s)	338, 674
VpaK11BI	GGWCC	3 cut(s)	664, 1017, 1637
VspI	ATTAAT	1 cut(s)	750
XapI	RAATTY	9 cut(s)	61, 95, 147, 300, 1046, 1944, 1982, 2294, 2888
XbaI	TCTAGA	1 cut(s)	2684
XceI	RCATGY	4 cut(s)	1623, 1803, 2358, 2869
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XmnI	GAANNNNTTC	2 cut(s)	366, 2592
XspI	CTAG	9 cut(s)	227, 513, 585, 1293, 1466, 1710, 2423, 2577, 2685
Zsp2I	ATGCAT	3 cut(s)	210, 1033, 1634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.