Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003293

Physical Location & Seq

Genomic Coordinates Reverse (-)

66450226 .. 66456392

Gene Structure 6167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG485700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2502 bp

ATGCATGATGGTGTTATGGGTCTAGTAGGCAAGCTTGGAACATCAATTGTCGATGGCATTTCAACCTCTGAGCAATTGATCAATGCAAGAAAGGAAACTTATGGAGTTAATAAGTTCACTGAGAGCCCATCTCGTGGATTTTTACTATTTGTATGGGAAGCCCTTCAAGACACCACCCTCATGATACTTGGAGTTTGTGCCTTTGTCTCTCTGCTTGTTGGGATAATGACAGAAGGATGGCCAAGGGGTGCCCATGATGGACTTGGAATTGTTGCGAGCATTTTGCTTGTTGTATTTGTGACTGCTACTAGCGATTATAAGCAGTCTCTGCAGTTCAAGGACTTGGACAAGGAGAAGAAAAAGATTACAGTTCATGTTACTAGAAATGGATTCAGACAGAAGTTGTCAATATATGATTTACTTCCTGGTGACATTGTTCATCTCAATATTGGAGATCTGGTCCCAGCTGATGGACTTTTCGTTTCTGGCTTTTCTATGCTGATAAATGAATCCAGCTTAACTGGAGAGAGTGAACCGGTTAATATTAATGATGTAAATCCTTTTCTCCTCTCTGGAACTAAAGTTCAAGATGGATCCTGCAAGATGCTTGTGACTACTGTTGGAATGAGAACCCAGTGGGGTAAATTGATGGCTACTCTTACTGAAGGTGGAGATGATGAAACCCCCTTGCAGGTGAAACTAAACGGTGTGGCAACTATCATTGGTAAAATAGGCCTGTTTTTTGCAGTAGTGACATTTGCTGTATTAGTTCAAGGATTGTTCAGCCGCAAGCTTCAAGAAGGATTAGTATGGTCCGGAGATGATGCATTGGTAATTTTGGAATTTTTCGCTATAGCTGTTACAATTGTAGTTGTTGCCGTTCCTGAAGGTTTGCCTTTGGCTGTAACATTAAGCCTTGCTTTTGCCATGAAGAAGATGATGAACGATAAGGCACTTGTCCGACATTTGGCTGCTTGTGAGACAATGGGATCTGCCACAACTATCTGTAGTGACAAGACTGGAACACTAACAACTAACCGAATGACGGTTGTAAAAACTTGCATTTGTTTGAAAATCAAAGACGTGGCTAGCTCGGCGAAATCATCTGACCTCTGCTCTGAAATACCTGATGCTACTTTGAAAGTTCTACTTCAGTGCATATTTAACAATACTGGAGGAGACATTGTTAAAAACAAAGATGACAGGATTGAGATACTGGGAACACCCACTGACGCTGCTGTTTTGGGATTTGGGATGTCACTAGGTGGAGATTTCAAGGCAGAACGACAAACATCAAAACTTGTGAAAGTTGAGCCCTTCAATTCTGTGAAGAAGCGGATGGCTGTTGTTCTACAGCTTCCTGAAGGTGGCTTCCGAGTGCATTGTAAAGGTGCTTCTGAGATAATTTTAGCTGCATGTGACAAATGGATGGGTCCAAATGGGGAGGTAATTCCGCTTGATATAGCTTCCATCAATCGTTTGAATGGTATCATAGAACAGTTTGCTAGTGAAGCCCTTAGAACTCTATGCCTGGCATACATGGACATTGGAAGTGAGTTCTCTGCTGAGAGTCCTATTCCTGTCGATGGATATACATGTATAGGAATTGTGGGTATTAAGGATCCAGTTCGTCCCGGTGTCAAGGAGTCTGTTGAGATTTGTAGGTCTGCTGGTATTACTGTCCGAATGGTTACTGGTGATAACATAAACACTGCAAAAGCAATTGCAAGAGAATGTGGAATTTTGACTGATGGAGGTTTAGCAATTGAAGGCCCAGAATTTCGTGAAAAGAGTGAGGAGGAATTACAAAAAATTATTCCAAAACTTCAGGTAATGGCTCGATCTTCGCCAATGGATAAGCATACCCTTGTAAAACACTTGAGAACCACTTTTGGAGAAGTTGTTGCAGTGACAGGTGATGGTACAAATGATGCTCCAGCACTTCATGAAGCTGATATAGGACTTGCAATGGGAATTGCTGGAACTGAGGTGGCTAAAGAGAGTGCTGATGTAATAATTCTGGATGATAACTTCTCTACAATTGTGACCGTGGCTAAATGGGGGCGTTCAGTTTACTTGAACATACAGAAATTTGTTCAGTTCCAGCTAACAGTTAATGTGGTTGCTCTTGTAGTCAACTTCTCTTCAGCATGTTTAACTGGAAGCGCTCCCCTTACTGCTGTTCAGCTTCTCTGGGTTAACATGATCATGGACACTCTAGGAGCCCTTGCATTAGCCACTGAGCCCCCTAATGATGATTTGATGAAGAGAACACCAGTTGGCAGGACAGGAAACTTCATTACTAATGTGATGTGGAGAAATATCTTGGGGCAGTCGCTGTATCAGTTTGTGGTAATATGGTATCTGCTGACTAGAGGAAAAGAAGCTTTTCAGCTTGTTGGCCCAGATTCAGATTTGATCTTAAACACCCTGATTTTCAACTCATTTGTCTTCTGTCAGGTAATTATTCATAATTTTATATCACAAAATTTGACTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019866 GO:0022803 GO:0022804 GO:0022838 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031226 GO:0031967 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

833

Amino Acids

89.92

Weight (kDa)

5.46

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	4 - 70	1.7e-09	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	121 - 219	2.5e-20	P-type ATPase actuator domain
Cation_ATPase	PF13246	386 - 545	2.3e-30	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	514 - 652	3.5e-12	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	723 - 822	2.8e-25	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27770 AT1G27770 AT1G27770 AT1G27770
fragaria_vesca	FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180
malus_domestica	MD08G1085200.v1.1 MD08G1085600.v1.1 MD12G1068300.v1.1 MD15G1070800.v1.1
prunus_persica	Prupe.1G423500_v2.0.a1 Prupe.1G423500_v2.0.a1 Prupe.1G423500_v2.0.a1 Prupe.1G423500_v2.0.a1 Prupe.1G423500_v2.0.a1
pyrus_communis	pycom08g07020 pycom15g06650 pycom15g06660
rosa_chinensis	RchiOBHm_Chr6g0309491
rosa_laevigata	RLG00000010561
rosa_multiflora	Rmu_sc0007283.1_g000007
rosa_roxburghii	Rroxscaffold_7G00159360
rosa_rugosa	Rorug06G0372300 Rorug06G0372400
rosa_samantha	Rh6AG485700 Rh6BG495000
rosa_wichuraiana	Rw6G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AarI	CACCTGC	1 cut(s)	682
Acc36I	ACCTGC	1 cut(s)	682
AccB1I	GGYRCC	1 cut(s)	248
AccB7I	CCANNNNNTGG	2 cut(s)	134, 470
AccIII	TCCGGA	1 cut(s)	815
AciI	CCGC	3 cut(s)	787, 1336, 1454
AclWI	GGATC	5 cut(s)	588, 601, 997, 1616, 1629
AcoI	YGGCCR	1 cut(s)	239
AcsI	RAATTY	5 cut(s)	842, 1740, 1778, 2090, 2488
AcuI	CTGAAG	6 cut(s)	684, 906, 1136, 1383, 1811, 2130
AdeI	CACNNNGTG	1 cut(s)	1265
AfaI	GTAC	1 cut(s)	1924
AfeI	AGCGCT	1 cut(s)	2167
AfiI	CCNNNNNNNGG	7 cut(s)	134, 470, 691, 967, 1045, 1367, 1586
AflIII	ACRYGT	1 cut(s)	1595
AgeI	ACCGGT	1 cut(s)	535
AjiI	CACGTC	1 cut(s)	1084
AjnI	CCWGG	2 cut(s)	424, 1530
AloI	GAACNNNNNNTCC	2 cut(s)	567, 599
Alw26I	GTCTC	4 cut(s)	211, 330, 974, 1173
AlwI	GGATC	5 cut(s)	588, 601, 997, 1616, 1629
AlwNI	CAGNNNCTG	2 cut(s)	328, 2338
Aor13HI	TCCGGA	1 cut(s)	815
Aor51HI	AGCGCT	1 cut(s)	2167
AoxI	GGCC	4 cut(s)	239, 733, 1771, 2401
ApeKI	GCWGC	3 cut(s)	971, 1235, 1412
ApoI	RAATTY	5 cut(s)	842, 1740, 1778, 2090, 2488
AseI	ATTAAT	1 cut(s)	546
AsiGI	ACCGGT	1 cut(s)	535
Asp700I	GAANNNNTTC	2 cut(s)	162, 2388
AspLEI	GCGC	1 cut(s)	2168
AspS9I	GGNCC	5 cut(s)	460, 813, 1433, 1772, 2402
AsuC2I	CCSGG	1 cut(s)	1635
AsuHPI	GGTGA	4 cut(s)	440, 706, 1709, 1928
AsuNHI	GCTAGC	1 cut(s)	1088
AvaII	GGWCC	3 cut(s)	460, 813, 1433
BaeGI	GKGCMC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	241
BamHI	GGATCC	2 cut(s)	593, 1621
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	4 cut(s)	128, 1317, 2227, 2247
BarI	GAAGNNNNNNTAC	2 cut(s)	1378, 1410
BauI	CACGAG	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	2443
BbvI	GCAGC	3 cut(s)	958, 1222, 1399
BceAI	ACGGC	1 cut(s)	863
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	2 cut(s)	426, 1532
BclI	TGATCA	2 cut(s)	78, 2205
BcnI	CCSGG	1 cut(s)	1635
BcoDI	GTCTC	4 cut(s)	211, 330, 974, 1173
BfaI	CTAG	8 cut(s)	23, 309, 381, 1089, 1262, 1506, 2219, 2373
BfmI	CTRYAG	4 cut(s)	329, 852, 1006, 1352
BfoI	RGCGCY	1 cut(s)	2169
BfuAI	ACCTGC	1 cut(s)	682
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	4 cut(s)	787, 972, 1236, 1413
BlsI	GCNGC	4 cut(s)	788, 973, 1237, 1414
Bme1390I	CCNGG	3 cut(s)	426, 1532, 1635
Bme18I	GGWCC	3 cut(s)	460, 813, 1433
BmgBI	CACGTC	1 cut(s)	1084
BmgT120I	GGNCC	5 cut(s)	460, 813, 1433, 1772, 2402
BmiI	GGNNCC	6 cut(s)	250, 462, 595, 1434, 1623, 2224
BmrFI	CCNGG	3 cut(s)	426, 1532, 1635
BmrI	ACTGGG	2 cut(s)	628, 1226
BmsI	GCATC	4 cut(s)	594, 814, 1120, 1921
BmtI	GCTAGC	1 cut(s)	1092
BmuI	ACTGGG	2 cut(s)	628, 1226
BpiI	GAAGAC	1 cut(s)	2443
BplI	GAGNNNNNCTC	2 cut(s)	115, 147
BpmI	CTGGAG	3 cut(s)	543, 1194, 1920
BpuEI	CTTGAG	1 cut(s)	1900
BpuMI	CCSGG	1 cut(s)	1635
BsaBI	GATNNNNATC	1 cut(s)	555
BsaJI	CCNNGG	2 cut(s)	242, 2049
BsaWI	WCCGGW	2 cut(s)	535, 815
BsaXI	ACNNNNNCTCC	6 cut(s)	444, 474, 1170, 1200, 1887, 1917
Bsc4I	CCNNNNNNNGG	7 cut(s)	134, 470, 691, 967, 1045, 1367, 1586
Bse118I	RCCGGY	1 cut(s)	535
Bse1I	ACTGG	9 cut(s)	526, 634, 1024, 1177, 1221, 1625, 1699, 2164, 2276
Bse3DI	GCAATG	1 cut(s)	1974
Bse8I	GATNNNNATC	1 cut(s)	555
BseAI	TCCGGA	1 cut(s)	815
BseBI	CCWGG	2 cut(s)	426, 1532
BseDI	CCNNGG	2 cut(s)	242, 2049
BseGI	GGATG	5 cut(s)	242, 1260, 1344, 1434, 2029
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	7 cut(s)	134, 470, 691, 967, 1045, 1367, 1586
BseMI	GCAATG	1 cut(s)	1974
BseMII	CTCAG	6 cut(s)	60, 111, 1389, 1557, 1977, 2232
BseNI	ACTGG	9 cut(s)	526, 634, 1024, 1177, 1221, 1625, 1699, 2164, 2276
BseRI	GAGGAG	3 cut(s)	557, 1191, 1811
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	3 cut(s)	958, 1222, 1399
BseYI	CCCAGC	1 cut(s)	463
BshFI	GGCC	4 cut(s)	241, 735, 1773, 2403
BshNI	GGYRCC	1 cut(s)	248
BshTI	ACCGGT	1 cut(s)	535
BsiSI	CCGG	3 cut(s)	536, 816, 1635
BslFI	GGGAC	2 cut(s)	446, 1617
BslI	CCNNNNNNNGG	7 cut(s)	134, 470, 691, 967, 1045, 1367, 1586
BsmAI	GTCTC	4 cut(s)	211, 330, 974, 1173
BsmFI	GGGAC	2 cut(s)	446, 1617
BsnI	GGCC	4 cut(s)	241, 735, 1773, 2403
Bsp1286I	GDGCHC	5 cut(s)	128, 253, 1317, 2227, 2247
Bsp13I	TCCGGA	1 cut(s)	815
Bsp143I	GATC	8 cut(s)	78, 454, 593, 989, 1621, 1841, 2205, 2418
BspACI	CCGC	3 cut(s)	787, 1336, 1454
BspANI	GGCC	4 cut(s)	241, 735, 1773, 2403
BspCNI	CTCAG	6 cut(s)	61, 112, 1390, 1558, 1978, 2233
BspEI	TCCGGA	1 cut(s)	815
BspHI	TCATGA	2 cut(s)	180, 1945
BspLI	GGNNCC	6 cut(s)	250, 462, 595, 1434, 1623, 2224
BspMAI	CTGCAG	1 cut(s)	333
BspMI	ACCTGC	1 cut(s)	682
BspOI	GCTAGC	1 cut(s)	1092
BspPI	GGATC	5 cut(s)	588, 601, 997, 1616, 1629
BspT107I	GGYRCC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	1974
BsrFI	RCCGGY	1 cut(s)	535
BsrI	ACTGG	9 cut(s)	526, 634, 1024, 1177, 1221, 1625, 1699, 2164, 2276
BssAI	RCCGGY	1 cut(s)	535
BssECI	CCNNGG	2 cut(s)	242, 2049
BssMI	GATC	8 cut(s)	78, 454, 593, 989, 1621, 1841, 2205, 2418
BssSI	CACGAG	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	242
Bst2BI	CACGAG	1 cut(s)	132
Bst2UI	CCWGG	2 cut(s)	426, 1532
Bst4CI	ACNGT	8 cut(s)	370, 619, 707, 1048, 1500, 1681, 2050, 2113
Bst6I	CTCTTC	2 cut(s)	2149, 2261
BstAPI	GCANNNNNTGC	1 cut(s)	328
BstC8I	GCNNGC	4 cut(s)	32, 277, 791, 1090
BstDEI	CTNAG	7 cut(s)	69, 120, 1398, 1517, 1566, 1986, 2241
BstDSI	CCRYGG	1 cut(s)	2049
BstF5I	GGATG	5 cut(s)	242, 1260, 1344, 1434, 2029
BstH2I	RGCGCY	1 cut(s)	2169
BstHHI	GCGC	1 cut(s)	2168
BstKTI	GATC	8 cut(s)	81, 457, 596, 992, 1624, 1844, 2208, 2421
BstMAI	GTCTC	4 cut(s)	211, 330, 974, 1173
BstMBI	GATC	8 cut(s)	78, 454, 593, 989, 1621, 1841, 2205, 2418
BstMWI	GCNNNNNNNGC	3 cut(s)	328, 1094, 1511
BstNI	CCWGG	2 cut(s)	426, 1532
BstNSI	RCATGY	3 cut(s)	1419, 1599, 2154
BstSCI	CCNGG	3 cut(s)	424, 1530, 1633
BstSFI	CTRYAG	4 cut(s)	329, 852, 1006, 1352
BstSLI	GKGCMC	1 cut(s)	253
BstV1I	GCAGC	3 cut(s)	958, 1222, 1399
BstV2I	GAAGAC	1 cut(s)	2443
BstX2I	RGATCY	4 cut(s)	454, 593, 989, 1621
BstYI	RGATCY	4 cut(s)	454, 593, 989, 1621
BsuRI	GGCC	4 cut(s)	241, 735, 1773, 2403
BtgI	CCRYGG	1 cut(s)	2049
BtrI	CACGTC	1 cut(s)	1084
BtsCI	GGATG	5 cut(s)	242, 1260, 1344, 1434, 2029
BtsI	GCAGTG	2 cut(s)	1710, 1914
BtsIMutI	CAGTG	7 cut(s)	117, 641, 1160, 1227, 1710, 1914, 2238
BveI	ACCTGC	1 cut(s)	682
Cac8I	GCNNGC	4 cut(s)	32, 277, 791, 1090
CaiI	CAGNNNCTG	2 cut(s)	328, 2338
CciI	TCATGA	2 cut(s)	180, 1945
CfoI	GCGC	1 cut(s)	2168
Cfr10I	RCCGGY	1 cut(s)	535
Cfr13I	GGNCC	5 cut(s)	460, 813, 1433, 1772, 2402
CseI	GACGC	1 cut(s)	1241
Csp6I	GTAC	1 cut(s)	1923
CspAI	ACCGGT	1 cut(s)	535
CviQI	GTAC	1 cut(s)	1923
DdeI	CTNAG	7 cut(s)	69, 120, 1398, 1517, 1566, 1986, 2241
DpnI	GATC	8 cut(s)	80, 456, 595, 991, 1623, 1843, 2207, 2420
DpnII	GATC	8 cut(s)	78, 454, 593, 989, 1621, 1841, 2205, 2418
DraIII	CACNNNGTG	1 cut(s)	1265
EaeI	YGGCCR	1 cut(s)	239
Eam1104I	CTCTTC	2 cut(s)	2149, 2261
EarI	CTCTTC	2 cut(s)	2149, 2261
Eco130I	CCWWGG	1 cut(s)	242
Eco147I	AGGCCT	1 cut(s)	735
Eco24I	GRGCYC	4 cut(s)	128, 1317, 2227, 2247
Eco47I	GGWCC	3 cut(s)	460, 813, 1433
Eco47III	AGCGCT	1 cut(s)	2167
Eco57I	CTGAAG	6 cut(s)	684, 906, 1136, 1383, 1811, 2130
EcoRII	CCWGG	2 cut(s)	424, 1530
EcoT14I	CCWWGG	1 cut(s)	242
EcoT22I	ATGCAT	2 cut(s)	6, 829
EcoT38I	GRGCYC	4 cut(s)	128, 1317, 2227, 2247
ErhI	CCWWGG	1 cut(s)	242
FalI	AAGNNNNNCTT	4 cut(s)	904, 936, 1134, 1166
FaqI	GGGAC	2 cut(s)	446, 1617
FbaI	TGATCA	2 cut(s)	78, 2205
Fnu4HI	GCNGC	4 cut(s)	787, 972, 1236, 1413
FokI	GGATG	5 cut(s)	249, 1267, 1351, 1441, 2036
FriOI	GRGCYC	4 cut(s)	128, 1317, 2227, 2247
Fsp4HI	GCNGC	4 cut(s)	787, 972, 1236, 1413
FspBI	CTAG	8 cut(s)	23, 309, 381, 1089, 1262, 1506, 2219, 2373
GlaI	GCGC	1 cut(s)	2167
GluI	GCNGC	4 cut(s)	787, 972, 1236, 1413
GsaI	CCCAGC	1 cut(s)	467
GsuI	CTGGAG	3 cut(s)	543, 1194, 1920
HaeII	RGCGCY	1 cut(s)	2169
HaeIII	GGCC	4 cut(s)	241, 735, 1773, 2403
HapII	CCGG	3 cut(s)	536, 816, 1635
HgaI	GACGC	1 cut(s)	1241
HhaI	GCGC	1 cut(s)	2168
Hin6I	GCGC	1 cut(s)	2166
HinP1I	GCGC	1 cut(s)	2166
HincII	GTYRAC	2 cut(s)	2137, 2200
HindII	GTYRAC	2 cut(s)	2137, 2200
HindIII	AAGCTT	3 cut(s)	32, 791, 2385
HinfI	GANTC	6 cut(s)	390, 509, 1570, 1646, 2408, 2494
HpaI	GTTAAC	1 cut(s)	2200
HpaII	CCGG	3 cut(s)	536, 816, 1635
HphI	GGTGA	4 cut(s)	440, 706, 1709, 1928
Hpy166II	GTNNAC	5 cut(s)	117, 533, 2074, 2137, 2200
Hpy188I	TCNGA	9 cut(s)	70, 395, 962, 1108, 1120, 1376, 1399, 1685, 2413
Hpy8I	GTNNAC	5 cut(s)	117, 533, 2074, 2137, 2200
HpyAV	CCTTC	8 cut(s)	173, 227, 659, 794, 881, 1327, 1358, 1763
HpyCH4III	ACNGT	8 cut(s)	370, 619, 707, 1048, 1500, 1681, 2050, 2113
HpyCH4IV	ACGT	1 cut(s)	1083
HpyF10VI	GCNNNNNNNGC	3 cut(s)	328, 1094, 1511
HpyF3I	CTNAG	7 cut(s)	69, 120, 1398, 1517, 1566, 1986, 2241
HpySE526I	ACGT	1 cut(s)	1083
HspAI	GCGC	1 cut(s)	2166
Kpn2I	TCCGGA	1 cut(s)	815
Ksp22I	TGATCA	2 cut(s)	78, 2205
KspAI	GTTAAC	1 cut(s)	2200
Kzo9I	GATC	8 cut(s)	78, 454, 593, 989, 1621, 1841, 2205, 2418
LmnI	GCTCC	3 cut(s)	1939, 2173, 2222
Lsp1109I	GCAGC	3 cut(s)	958, 1222, 1399
LweI	GCATC	4 cut(s)	594, 814, 1120, 1921
MaeI	CTAG	8 cut(s)	23, 309, 381, 1089, 1262, 1506, 2219, 2373
MaeII	ACGT	1 cut(s)	1083
MalI	GATC	8 cut(s)	80, 456, 595, 991, 1623, 1843, 2207, 2420
MboI	GATC	8 cut(s)	78, 454, 593, 989, 1621, 1841, 2205, 2418
MboII	GAAGA	8 cut(s)	367, 943, 946, 1342, 1836, 2136, 2278, 2443
MfeI	CAATTG	6 cut(s)	45, 74, 864, 1722, 1764, 2040
MflI	RGATCY	4 cut(s)	454, 593, 989, 1621
MhlI	GDGCHC	5 cut(s)	128, 253, 1317, 2227, 2247
MlsI	TGGCCA	1 cut(s)	241
MluNI	TGGCCA	1 cut(s)	241
MlyI	GAGTC	3 cut(s)	1579, 1655, 2488
MmeI	TCCRAC	2 cut(s)	601, 985
Mox20I	TGGCCA	1 cut(s)	241
Mph1103I	ATGCAT	2 cut(s)	6, 829
MroI	TCCGGA	1 cut(s)	815
MroXI	GAANNNNTTC	2 cut(s)	162, 2388
MscI	TGGCCA	1 cut(s)	241
MslI	CAYNNNNRTG	3 cut(s)	9, 179, 2207
Msp20I	TGGCCA	1 cut(s)	241
MspA1I	CMGCKG	1 cut(s)	467
MspI	CCGG	3 cut(s)	536, 816, 1635
MspR9I	CCNGG	3 cut(s)	426, 1532, 1635
MunI	CAATTG	6 cut(s)	45, 74, 864, 1722, 1764, 2040
MvaI	CCWGG	2 cut(s)	426, 1532
MwoI	GCNNNNNNNGC	3 cut(s)	328, 1094, 1511
NciI	CCSGG	1 cut(s)	1635
NdeII	GATC	8 cut(s)	78, 454, 593, 989, 1621, 1841, 2205, 2418
NheI	GCTAGC	1 cut(s)	1088
NlaIV	GGNNCC	6 cut(s)	250, 462, 595, 1434, 1623, 2224
NmeAIII	GCCGAG	1 cut(s)	1073
NmuCI	GTSAC	9 cut(s)	298, 428, 610, 751, 1010, 1257, 1418, 1909, 2044
NsiI	ATGCAT	2 cut(s)	6, 829
NspI	RCATGY	3 cut(s)	1419, 1599, 2154
PagI	TCATGA	2 cut(s)	180, 1945
PaqCI	CACCTGC	1 cut(s)	682
PceI	AGGCCT	1 cut(s)	735
PciI	ACATGT	1 cut(s)	1595
PdmI	GAANNNNTTC	2 cut(s)	162, 2388
PfeI	GAWTC	3 cut(s)	390, 509, 2408
PflMI	CCANNNNNTGG	2 cut(s)	134, 470
PinAI	ACCGGT	1 cut(s)	535
PkrI	GCNGC	4 cut(s)	788, 973, 1237, 1414
PleI	GAGTC	3 cut(s)	1578, 1654, 2488
PpsI	GAGTC	3 cut(s)	1578, 1654, 2488
PscI	ACATGT	1 cut(s)	1595
PshBI	ATTAAT	1 cut(s)	546
PsiI	TTATAA	1 cut(s)	318
Psp6I	CCWGG	2 cut(s)	424, 1530
PspFI	CCCAGC	1 cut(s)	463
PspGI	CCWGG	2 cut(s)	424, 1530
PspN4I	GGNNCC	6 cut(s)	250, 462, 595, 1434, 1623, 2224
PspPI	GGNCC	5 cut(s)	460, 813, 1433, 1772, 2402
PstI	CTGCAG	1 cut(s)	333
PstNI	CAGNNNCTG	2 cut(s)	328, 2338
PsuI	RGATCY	4 cut(s)	454, 593, 989, 1621
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	1 cut(s)	1924
RsaNI	GTAC	1 cut(s)	1923
RseI	CAYNNNNRTG	3 cut(s)	9, 179, 2207
SatI	GCNGC	4 cut(s)	787, 972, 1236, 1413
Sau3AI	GATC	8 cut(s)	78, 454, 593, 989, 1621, 1841, 2205, 2418
Sau96I	GGNCC	5 cut(s)	460, 813, 1433, 1772, 2402
SchI	GAGTC	3 cut(s)	1579, 1655, 2488
ScrFI	CCNGG	3 cut(s)	426, 1532, 1635
SduI	GDGCHC	5 cut(s)	128, 253, 1317, 2227, 2247
SfaNI	GCATC	4 cut(s)	594, 814, 1120, 1921
SfcI	CTRYAG	4 cut(s)	329, 852, 1006, 1352
SinI	GGWCC	3 cut(s)	460, 813, 1433
SmiMI	CAYNNNNRTG	3 cut(s)	9, 179, 2207
SmlI	CTYRAG	1 cut(s)	1879
SmoI	CTYRAG	1 cut(s)	1879
SseBI	AGGCCT	1 cut(s)	735
SsiI	CCGC	3 cut(s)	787, 1336, 1454
SspI	AATATT	2 cut(s)	448, 544
SspMI	CTAG	8 cut(s)	23, 309, 381, 1089, 1262, 1506, 2219, 2373
StuI	AGGCCT	1 cut(s)	735
StyD4I	CCNGG	3 cut(s)	424, 1530, 1633
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	8 cut(s)	370, 619, 707, 1048, 1500, 1681, 2050, 2113
TaiI	ACGT	1 cut(s)	1086
TaqI	TCGA	3 cut(s)	51, 1584, 1840
TauI	GCSGC	1 cut(s)	789
TfiI	GAWTC	3 cut(s)	390, 509, 2408
TscAI	CASTG	7 cut(s)	124, 641, 1160, 1234, 1717, 1914, 2245
TseFI	GTSAC	9 cut(s)	298, 428, 610, 751, 1010, 1257, 1418, 1909, 2044
TseI	GCWGC	3 cut(s)	971, 1235, 1412
Tsp45I	GTSAC	9 cut(s)	298, 428, 610, 751, 1010, 1257, 1418, 1909, 2044
TspRI	CASTG	7 cut(s)	124, 641, 1160, 1234, 1717, 1914, 2245
Van91I	CCANNNNNTGG	2 cut(s)	134, 470
VpaK11BI	GGWCC	3 cut(s)	460, 813, 1433
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	5 cut(s)	842, 1740, 1778, 2090, 2488
XceI	RCATGY	3 cut(s)	1419, 1599, 2154
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XmnI	GAANNNNTTC	2 cut(s)	162, 2388
XspI	CTAG	8 cut(s)	23, 309, 381, 1089, 1262, 1506, 2219, 2373
Zsp2I	ATGCAT	2 cut(s)	6, 829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.