Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003293

Physical Location & Seq

Genomic Coordinates Forward (+)

51877629 .. 51881776

Gene Structure 4148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0372400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAAGGATGAGGATCACTTGTATGCATTTGTAGATCCTGGCCGCATCTCTAATGAAGCTGGAAAGGTTGAGGCTAGATCATGTGCGCTATCACTTAGATTAGAGTCTGCACAAGTAGATCAATTAATTCTTGCGCCTTATAATACAGGGAATCATTGGTTGTTGGCTGCCATTAACCCATTTACTACATTGGTGGAGGCCCTAAAACGTGAATTGGATAACTTTTTCGGGAAGAATCCACTTCAATCGAAAGATTTGTCTCGTATTGTTAATTCTAATCACTATGCTCGCTTGACAAAGCTCTTGGATGAGGAGGACGTTTCCGATAAGATTGTCCATGGAGGTGAAAGAGATTTAAGCAACTTGAGGATAGCTCCCACCATCTTACTGGATGTCCCACAAGACTCTCTGATCATGAATGAGGAAGTATTTGGTCCCTTGCTTCCCATTGTCACGGTTGACAAGGTGGAAGACAGTTTTGATTTGATCAAAACAGGAACAAAGCCTCTTGCTGCATATTTGTTTACCAACAACAAGAAGCTGAAGGATCACTTTGTAAGGAGCATCTCTGCAGGGGGTTTAGTTATCAATGACACTATCGTACATTTTGCTGTTGCATCTTTGCCGTTTGGAGGAGTTGGGGAAAGTGGAATGGGTGCATACCATGGGAAATTCTCTTTCGAAGCTTTCAGCCATAAGAAGGCAGTTATTTATCGAGGTTTTGCCGGAGATTTTTCTCTGAGATACCCTCCATACACAATGGGTAAGTTAAGTCTTCTGAAGGCTATGGTTAGTGGTGATAGTATTTGGGGCATAATCTGGGCCCTGGTGGTTTACAAAATCCTCAGTACTTTTAAATCACTTGCTCGTATACTGAGATCTACCAAATCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0012505 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019866 GO:0022803 GO:0022804 GO:0022838 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0031224 GO:0031226 GO:0031967 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

298

Amino Acids

33.01

Weight (kDa)

7.11

Isoelectric Point (pI)

29.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	63 - 236	8.3e-28	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27770 AT1G27770 AT1G27770 AT1G27770
fragaria_vesca	FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180
malus_domestica	MD08G1085200.v1.1 MD08G1085600.v1.1 MD12G1068300.v1.1 MD15G1070800.v1.1
prunus_persica	Prupe.1G423500_v2.0.a1 Prupe.1G423500_v2.0.a1 Prupe.1G423500_v2.0.a1 Prupe.1G423500_v2.0.a1 Prupe.1G423500_v2.0.a1
pyrus_communis	pycom08g07020 pycom15g06650 pycom15g06660
rosa_chinensis	RchiOBHm_Chr6g0309491
rosa_laevigata	RLG00000010561
rosa_multiflora	Rmu_sc0007283.1_g000007
rosa_roxburghii	Rroxscaffold_7G00159360
rosa_rugosa	Rorug06G0372300 Rorug06G0372400
rosa_samantha	Rh6AG485700 Rh6BG495000
rosa_wichuraiana	Rw6G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	141
AccI	GTMKAC	1 cut(s)	871
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	3 cut(s)	21, 29, 555
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	671
AcuI	CTGAAG	2 cut(s)	563, 800
AfaI	GTAC	2 cut(s)	603, 850
AfiI	CCNNNNNNNGG	2 cut(s)	632, 700
AgsI	TTSAA	1 cut(s)	245
AjnI	CCWGG	2 cut(s)	37, 825
AluBI	AGCT	5 cut(s)	59, 301, 374, 541, 686
AluI	AGCT	5 cut(s)	59, 301, 374, 541, 686
Alw26I	GTCTC	1 cut(s)	264
AlwI	GGATC	3 cut(s)	21, 29, 555
AoxI	GGCC	3 cut(s)	40, 198, 822
ApaI	GGGCCC	1 cut(s)	826
ApeKI	GCWGC	2 cut(s)	167, 512
ApoI	RAATTY	1 cut(s)	671
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AseI	ATTAAT	1 cut(s)	125
AspLEI	GCGC	2 cut(s)	88, 136
AspS9I	GGNCC	4 cut(s)	199, 434, 822, 823
AsuHPI	GGTGA	2 cut(s)	356, 809
AsuII	TTCGAA	1 cut(s)	681
AvaII	GGWCC	1 cut(s)	434
BaeGI	GKGCMC	1 cut(s)	826
BanII	GRGCYC	1 cut(s)	826
BbsI	GAAGAC	2 cut(s)	477, 767
BbvI	GCAGC	2 cut(s)	154, 499
BccI	CCATC	1 cut(s)	389
BceAI	ACGGC	1 cut(s)	610
BciT130I	CCWGG	2 cut(s)	39, 827
BclI	TGATCA	2 cut(s)	411, 486
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	570
BglII	AGATCT	1 cut(s)	878
BisI	GCNGC	3 cut(s)	43, 168, 513
BlsI	GCNGC	3 cut(s)	44, 169, 514
BmcAI	AGTACT	1 cut(s)	850
Bme1390I	CCNGG	2 cut(s)	39, 827
Bme18I	GGWCC	1 cut(s)	434
BmgT120I	GGNCC	4 cut(s)	199, 434, 822, 823
BmiI	GGNNCC	2 cut(s)	436, 824
BmrFI	CCNGG	2 cut(s)	39, 827
BmsI	GCATC	3 cut(s)	54, 573, 626
BpiI	GAAGAC	2 cut(s)	477, 767
BplI	GAGNNNNNCTC	4 cut(s)	358, 390, 733, 765
Bpu14I	TTCGAA	1 cut(s)	681
BpuEI	CTTGAG	1 cut(s)	385
BsaBI	GATNNNNATC	1 cut(s)	12
BsaJI	CCNNGG	3 cut(s)	337, 664, 825
Bsc4I	CCNNNNNNNGG	2 cut(s)	632, 700
Bse1I	ACTGG	1 cut(s)	393
Bse8I	GATNNNNATC	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	39, 827
BseDI	CCNNGG	3 cut(s)	337, 664, 825
BseGI	GGATG	3 cut(s)	13, 313, 397
BseJI	GATNNNNATC	1 cut(s)	12
BseLI	CCNNNNNNNGG	2 cut(s)	632, 700
BseMII	CTCAG	3 cut(s)	731, 859, 866
BseNI	ACTGG	1 cut(s)	393
BseRI	GAGGAG	2 cut(s)	326, 648
BseSI	GKGCMC	1 cut(s)	826
BseXI	GCAGC	2 cut(s)	154, 499
BsgI	GTGCAG	1 cut(s)	93
BshFI	GGCC	3 cut(s)	42, 200, 824
BsiSI	CCGG	1 cut(s)	726
BslFI	GGGAC	2 cut(s)	380, 420
BslI	CCNNNNNNNGG	2 cut(s)	632, 700
BsmAI	GTCTC	1 cut(s)	264
BsmFI	GGGAC	2 cut(s)	380, 420
BsnI	GGCC	3 cut(s)	42, 200, 824
Bsp119I	TTCGAA	1 cut(s)	681
Bsp120I	GGGCCC	1 cut(s)	822
Bsp1286I	GDGCHC	1 cut(s)	826
Bsp143I	GATC	8 cut(s)	13, 34, 77, 118, 411, 486, 547, 878
Bsp19I	CCATGG	2 cut(s)	337, 664
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	3 cut(s)	42, 200, 824
BspCNI	CTCAG	3 cut(s)	732, 858, 867
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	2 cut(s)	436, 824
BspMAI	CTGCAG	1 cut(s)	574
BspPI	GGATC	3 cut(s)	21, 29, 555
BspT104I	TTCGAA	1 cut(s)	681
BsrI	ACTGG	1 cut(s)	393
BssECI	CCNNGG	3 cut(s)	337, 664, 825
BssMI	GATC	8 cut(s)	13, 34, 77, 118, 411, 486, 547, 878
BssNAI	GTATAC	1 cut(s)	872
BssT1I	CCWWGG	2 cut(s)	337, 664
Bst1107I	GTATAC	1 cut(s)	872
Bst2UI	CCWGG	2 cut(s)	39, 827
Bst4CI	ACNGT	2 cut(s)	457, 476
BstBI	TTCGAA	1 cut(s)	681
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	4 cut(s)	95, 740, 845, 875
BstDSI	CCRYGG	2 cut(s)	337, 664
BstF5I	GGATG	3 cut(s)	13, 313, 397
BstHHI	GCGC	2 cut(s)	88, 136
BstKTI	GATC	8 cut(s)	16, 37, 80, 121, 414, 489, 550, 881
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	8 cut(s)	13, 34, 77, 118, 411, 486, 547, 878
BstNI	CCWGG	2 cut(s)	39, 827
BstSCI	CCNGG	2 cut(s)	37, 825
BstSFI	CTRYAG	1 cut(s)	570
BstSLI	GKGCMC	1 cut(s)	826
BstV1I	GCAGC	2 cut(s)	154, 499
BstV2I	GAAGAC	2 cut(s)	477, 767
BstX2I	RGATCY	2 cut(s)	34, 878
BstXI	CCANNNNNNTGG	1 cut(s)	388
BstYI	RGATCY	2 cut(s)	34, 878
BstZ17I	GTATAC	1 cut(s)	872
BsuRI	GGCC	3 cut(s)	42, 200, 824
BtgI	CCRYGG	2 cut(s)	337, 664
BtsCI	GGATG	3 cut(s)	13, 313, 397
Cac8I	GCNNGC	1 cut(s)	289
CciI	TCATGA	1 cut(s)	414
CfoI	GCGC	2 cut(s)	88, 136
Cfr13I	GGNCC	4 cut(s)	199, 434, 822, 823
Csp6I	GTAC	2 cut(s)	602, 849
CviAII	CATG	4 cut(s)	81, 338, 415, 665
CviQI	GTAC	2 cut(s)	602, 849
DdeI	CTNAG	4 cut(s)	95, 740, 845, 875
DpnI	GATC	8 cut(s)	15, 36, 79, 120, 413, 488, 549, 880
DpnII	GATC	8 cut(s)	13, 34, 77, 118, 411, 486, 547, 878
DraI	TTTAAA	1 cut(s)	856
EaeI	YGGCCR	1 cut(s)	40
Eco130I	CCWWGG	2 cut(s)	337, 664
Eco24I	GRGCYC	1 cut(s)	826
Eco47I	GGWCC	1 cut(s)	434
Eco57I	CTGAAG	2 cut(s)	563, 800
EcoO109I	RGGNCCY	2 cut(s)	199, 823
EcoRII	CCWGG	2 cut(s)	37, 825
EcoT14I	CCWWGG	2 cut(s)	337, 664
EcoT22I	ATGCAT	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	826
ErhI	CCWWGG	2 cut(s)	337, 664
FaeI	CATG	4 cut(s)	84, 341, 418, 668
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FaqI	GGGAC	2 cut(s)	380, 420
FatI	CATG	4 cut(s)	80, 337, 414, 664
FbaI	TGATCA	2 cut(s)	411, 486
FblI	GTMKAC	1 cut(s)	871
Fnu4HI	GCNGC	3 cut(s)	43, 168, 513
FokI	GGATG	3 cut(s)	20, 320, 404
FriOI	GRGCYC	1 cut(s)	826
Fsp4HI	GCNGC	3 cut(s)	43, 168, 513
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	2 cut(s)	87, 135
GluI	GCNGC	3 cut(s)	43, 168, 513
HaeIII	GGCC	3 cut(s)	42, 200, 824
HapII	CCGG	1 cut(s)	726
HhaI	GCGC	2 cut(s)	88, 136
Hin1II	CATG	4 cut(s)	84, 341, 418, 668
Hin6I	GCGC	2 cut(s)	86, 134
HinP1I	GCGC	2 cut(s)	86, 134
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HindIII	AAGCTT	1 cut(s)	684
HinfI	GANTC	4 cut(s)	104, 151, 235, 404
HpaII	CCGG	1 cut(s)	726
HphI	GGTGA	2 cut(s)	356, 809
Hpy166II	GTNNAC	4 cut(s)	460, 525, 835, 872
Hpy188I	TCNGA	5 cut(s)	325, 411, 741, 780, 892
Hpy188III	TCNNGA	2 cut(s)	229, 415
Hpy8I	GTNNAC	4 cut(s)	460, 525, 835, 872
HpyAV	CCTTC	3 cut(s)	538, 694, 775
HpyCH4III	ACNGT	2 cut(s)	457, 476
HpyCH4IV	ACGT	2 cut(s)	208, 318
HpyCH4V	TGCA	6 cut(s)	26, 110, 515, 572, 617, 659
HpyF3I	CTNAG	4 cut(s)	95, 740, 845, 875
HpySE526I	ACGT	2 cut(s)	208, 318
Hsp92II	CATG	4 cut(s)	84, 341, 418, 668
HspAI	GCGC	2 cut(s)	86, 134
Ksp22I	TGATCA	2 cut(s)	411, 486
Kzo9I	GATC	8 cut(s)	13, 34, 77, 118, 411, 486, 547, 878
LmnI	GCTCC	2 cut(s)	379, 561
Lsp1109I	GCAGC	2 cut(s)	154, 499
LweI	GCATC	3 cut(s)	54, 573, 626
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	2 cut(s)	208, 318
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	8 cut(s)	15, 36, 79, 120, 413, 488, 549, 880
MboI	GATC	8 cut(s)	13, 34, 77, 118, 411, 486, 547, 878
MboII	GAAGA	3 cut(s)	244, 482, 767
MflI	RGATCY	2 cut(s)	34, 878
MhlI	GDGCHC	1 cut(s)	826
MluCI	AATT	5 cut(s)	122, 126, 212, 271, 671
MlyI	GAGTC	2 cut(s)	113, 398
Mph1103I	ATGCAT	1 cut(s)	28
MseI	TTAA	6 cut(s)	125, 174, 270, 356, 770, 855
MslI	CAYNNNNRTG	2 cut(s)	21, 342
MspI	CCGG	1 cut(s)	726
MspR9I	CCNGG	2 cut(s)	39, 827
MvaI	CCWGG	2 cut(s)	39, 827
NcoI	CCATGG	2 cut(s)	337, 664
NdeII	GATC	8 cut(s)	13, 34, 77, 118, 411, 486, 547, 878
NlaIII	CATG	4 cut(s)	84, 341, 418, 668
NlaIV	GGNNCC	2 cut(s)	436, 824
NmuCI	GTSAC	1 cut(s)	451
NsiI	ATGCAT	1 cut(s)	28
NspV	TTCGAA	1 cut(s)	681
PagI	TCATGA	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	151, 235
PkrI	GCNGC	3 cut(s)	44, 169, 514
PleI	GAGTC	2 cut(s)	112, 398
PpsI	GAGTC	2 cut(s)	112, 398
PshBI	ATTAAT	1 cut(s)	125
PsiI	TTATAA	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	37, 825
PspGI	CCWGG	2 cut(s)	37, 825
PspN4I	GGNNCC	2 cut(s)	436, 824
PspOMI	GGGCCC	1 cut(s)	822
PspPI	GGNCC	4 cut(s)	199, 434, 822, 823
PstI	CTGCAG	1 cut(s)	574
PsuI	RGATCY	2 cut(s)	34, 878
RsaI	GTAC	2 cut(s)	603, 850
RsaNI	GTAC	2 cut(s)	602, 849
RseI	CAYNNNNRTG	2 cut(s)	21, 342
SaqAI	TTAA	6 cut(s)	125, 174, 270, 356, 770, 855
SatI	GCNGC	3 cut(s)	43, 168, 513
Sau3AI	GATC	8 cut(s)	13, 34, 77, 118, 411, 486, 547, 878
Sau96I	GGNCC	4 cut(s)	199, 434, 822, 823
ScaI	AGTACT	1 cut(s)	850
SchI	GAGTC	2 cut(s)	113, 398
ScrFI	CCNGG	2 cut(s)	39, 827
SduI	GDGCHC	1 cut(s)	826
SfaNI	GCATC	3 cut(s)	54, 573, 626
SfcI	CTRYAG	1 cut(s)	570
SfuI	TTCGAA	1 cut(s)	681
SinI	GGWCC	1 cut(s)	434
SmiMI	CAYNNNNRTG	2 cut(s)	21, 342
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	5 cut(s)	122, 126, 212, 271, 671
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	2 cut(s)	37, 825
StyI	CCWWGG	2 cut(s)	337, 664
TaaI	ACNGT	2 cut(s)	457, 476
TaiI	ACGT	2 cut(s)	211, 321
TaqI	TCGA	3 cut(s)	248, 681, 715
TasI	AATT	5 cut(s)	122, 126, 212, 271, 671
TatI	WGTACW	1 cut(s)	848
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	2 cut(s)	151, 235
Tru1I	TTAA	6 cut(s)	125, 174, 270, 356, 770, 855
Tru9I	TTAA	6 cut(s)	125, 174, 270, 356, 770, 855
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	2 cut(s)	167, 512
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	3 cut(s)	17, 69, 431
VpaK11BI	GGWCC	1 cut(s)	434
VspI	ATTAAT	1 cut(s)	125
XapI	RAATTY	1 cut(s)	671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	871
XspI	CTAG	1 cut(s)	75
ZrmI	AGTACT	1 cut(s)	850
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.