Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003293

Physical Location & Seq

Genomic Coordinates Reverse (-)

8103025 .. 8105673

Gene Structure 2649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1068300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGATCGATCTACGGGAGGGTTTATTAAATTTTATAATGTTCATGGTGAGACACATCAGCACCAATTCACTAAAACACACTCTCGAACTATATGGAGATATATATGCAAATCATATTAAACCGGACGAGGTAGTTATGGTTATCTTCTCTAAGGACTTTGATAAGAAGCGTATTCATAAGTGTTTCCACAAGAAGACAGTTTTTGAGGCACGCTCATGTGTTGGGCTACGTGAGAGGCTTGCAAATCACCCTGGAAGAGAACAAAGTCTAGAGAAAGTGGAAAGACAACTTGTGGTAAAAGCTGGTCCTAACGAATCCCCAAGGCTAGAGGATGTGATAAATGAATTTCTTGGAGAAGAACCAATGCCAGAGGAAGTGCCAGGGGATGCTTATGATGAACTGGAGGTCCCTGCTCGTGCTGGTAATTATTATAAACACATGCGCACACCTTTTTCTTTTGCCAATAATTTGAGTTGTTTGGTATATCACTCTGCCACTAAAGATTACTTAGTTCATATTTCTGCAATTTCAGCAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

20.6

Weight (kDa)

6.3

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27770 AT1G27770 AT1G27770 AT1G27770
fragaria_vesca	FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180 FvH4_2g33180
malus_domestica	MD08G1085200.v1.1 MD08G1085600.v1.1 MD12G1068300.v1.1 MD15G1070800.v1.1
prunus_persica	Prupe.1G423500_v2.0.a1 Prupe.1G423500_v2.0.a1 Prupe.1G423500_v2.0.a1 Prupe.1G423500_v2.0.a1 Prupe.1G423500_v2.0.a1
pyrus_communis	pycom08g07020 pycom15g06650 pycom15g06660
rosa_chinensis	RchiOBHm_Chr6g0309491
rosa_laevigata	RLG00000010561
rosa_multiflora	Rmu_sc0007283.1_g000007
rosa_roxburghii	Rroxscaffold_7G00159360
rosa_rugosa	Rorug06G0372300 Rorug06G0372400
rosa_samantha	Rh6AG485700 Rh6BG495000
rosa_wichuraiana	Rw6G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	35, 432
Acc16I	TGCGCA	1 cut(s)	443
AcsI	RAATTY	2 cut(s)	28, 344
AjnI	CCWGG	2 cut(s)	250, 379
AloI	GAACNNNNNNTCC	2 cut(s)	390, 422
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Alw26I	GTCTC	1 cut(s)	43
ApoI	RAATTY	2 cut(s)	28, 344
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	2 cut(s)	305, 406
AsuHPI	GGTGA	2 cut(s)	58, 239
AvaII	GGWCC	2 cut(s)	305, 406
BauI	CACGAG	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	200
BciT130I	CCWGG	2 cut(s)	252, 381
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	2 cut(s)	269, 326
Bme1390I	CCNGG	2 cut(s)	252, 381
Bme18I	GGWCC	2 cut(s)	305, 406
BmgT120I	GGNCC	2 cut(s)	305, 406
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	2 cut(s)	252, 381
BmsI	GCATC	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	200
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BpmI	CTGGAG	1 cut(s)	422
Bsa29I	ATCGAT	1 cut(s)	6
BsaAI	YACGTR	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	250, 320, 380
BsaWI	WCCGGW	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	405
BseBI	CCWGG	2 cut(s)	252, 381
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	3 cut(s)	250, 320, 380
BseGI	GGATG	2 cut(s)	337, 391
BseNI	ACTGG	1 cut(s)	405
BshVI	ATCGAT	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	392
BsmAI	GTCTC	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	392
Bsp143I	GATC	2 cut(s)	3, 7
BspDI	ATCGAT	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	408
BsrI	ACTGG	1 cut(s)	405
BssECI	CCNNGG	3 cut(s)	250, 320, 380
BssMI	GATC	2 cut(s)	3, 7
BssSI	CACGAG	1 cut(s)	414
BssT1I	CCWWGG	1 cut(s)	320
Bst2BI	CACGAG	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	252, 381
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	250
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	2 cut(s)	211, 240
BstDEI	CTNAG	2 cut(s)	150, 508
BstF5I	GGATG	2 cut(s)	337, 391
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	2 cut(s)	6, 10
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	2 cut(s)	3, 7
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	2 cut(s)	252, 381
BstNSI	RCATGY	1 cut(s)	442
BstSCI	CCNGG	2 cut(s)	250, 379
BstV2I	GAAGAC	1 cut(s)	200
Bsu15I	ATCGAT	1 cut(s)	6
BsuTUI	ATCGAT	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	337, 391
Cac8I	GCNNGC	2 cut(s)	211, 240
CfoI	GCGC	1 cut(s)	444
Cfr13I	GGNCC	2 cut(s)	305, 406
ClaI	ATCGAT	1 cut(s)	6
CviAII	CATG	3 cut(s)	43, 216, 439
CviJI	RGCY	4 cut(s)	226, 238, 302, 325
CviKI_1	RGCY	4 cut(s)	226, 238, 302, 325
DdeI	CTNAG	2 cut(s)	150, 508
DpnI	GATC	2 cut(s)	5, 9
DpnII	GATC	2 cut(s)	3, 7
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	320
Eco47I	GGWCC	2 cut(s)	305, 406
EcoO109I	RGGNCCY	1 cut(s)	406
EcoRII	CCWGG	2 cut(s)	250, 379
EcoT14I	CCWWGG	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	3 cut(s)	46, 219, 442
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	3 cut(s)	42, 215, 438
FokI	GGATG	2 cut(s)	344, 398
FspAI	RTGCGCAY	1 cut(s)	443
FspBI	CTAG	2 cut(s)	269, 326
FspI	TGCGCA	1 cut(s)	443
GlaI	GCGC	1 cut(s)	443
GsuI	CTGGAG	1 cut(s)	422
HapII	CCGG	1 cut(s)	122
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	3 cut(s)	46, 219, 442
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	2 cut(s)	58, 239
Hpy188III	TCNNGA	2 cut(s)	83, 269
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	3 cut(s)	107, 242, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	2 cut(s)	150, 508
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	3 cut(s)	46, 219, 442
HspAI	GCGC	1 cut(s)	442
Kzo9I	GATC	2 cut(s)	3, 7
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	2 cut(s)	269, 326
MaeII	ACGT	1 cut(s)	229
MalI	GATC	2 cut(s)	5, 9
MboI	GATC	2 cut(s)	3, 7
MboII	GAAGA	4 cut(s)	136, 205, 267, 368
MluCI	AATT	6 cut(s)	28, 64, 344, 424, 466, 525
MnlI	CCTC	7 cut(s)	10, 121, 199, 228, 322, 364, 397
MseI	TTAA	2 cut(s)	26, 117
MslI	CAYNNNNRTG	1 cut(s)	214
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	252, 381
MvaI	CCWGG	2 cut(s)	252, 381
MwoI	GCNNNNNNNGC	1 cut(s)	530
NdeII	GATC	2 cut(s)	3, 7
NlaIII	CATG	3 cut(s)	46, 219, 442
NlaIV	GGNNCC	1 cut(s)	408
NsbI	TGCGCA	1 cut(s)	443
NspI	RCATGY	1 cut(s)	442
PfeI	GAWTC	1 cut(s)	314
Ppu21I	YACGTR	1 cut(s)	230
PpuMI	RGGWCCY	1 cut(s)	406
PsiI	TTATAA	2 cut(s)	35, 432
Psp5II	RGGWCCY	1 cut(s)	406
Psp6I	CCWGG	2 cut(s)	250, 379
PspGI	CCWGG	2 cut(s)	250, 379
PspN4I	GGNNCC	1 cut(s)	408
PspPI	GGNCC	2 cut(s)	305, 406
PspPPI	RGGWCCY	1 cut(s)	406
RseI	CAYNNNNRTG	1 cut(s)	214
SaqAI	TTAA	2 cut(s)	26, 117
Sau3AI	GATC	2 cut(s)	3, 7
Sau96I	GGNCC	2 cut(s)	305, 406
ScrFI	CCNGG	2 cut(s)	252, 381
SetI	ASST	5 cut(s)	132, 232, 304, 408, 451
SfaNI	GCATC	1 cut(s)	376
SinI	GGWCC	2 cut(s)	305, 406
SmiMI	CAYNNNNRTG	1 cut(s)	214
Sse9I	AATT	6 cut(s)	28, 64, 344, 424, 466, 525
SspMI	CTAG	2 cut(s)	269, 326
StyD4I	CCNGG	2 cut(s)	250, 379
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	2 cut(s)	6, 84
TasI	AATT	6 cut(s)	28, 64, 344, 424, 466, 525
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	2 cut(s)	26, 117
Tru9I	TTAA	2 cut(s)	26, 117
TspDTI	ATGAA	5 cut(s)	31, 164, 357, 411, 503
VpaK11BI	GGWCC	2 cut(s)	305, 406
XapI	RAATTY	2 cut(s)	28, 344
XbaI	TCTAGA	1 cut(s)	268
XceI	RCATGY	1 cut(s)	442
XspI	CTAG	2 cut(s)	269, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.