Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001212.1

Orthogroup ID

OG0012580

Physical Location & Seq

Genomic Coordinates Reverse (-)

6241 .. 7513

Gene Structure 1273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001212.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atggaaggcgatcatttcttaaccgacttttcttgccaagaaaatccagcctttttggcaagcaagtcagaggtggtcgatgacgacacatcgcataataccactgacatctactatgatcctgcattgcaagaagagcacgttagagttttacttgagaaggagattgattttggattcaaaaataatgatgaaggatttgtcaaatggattgagttcagagatgaccggttgcaagccattaaatggattctcaaaaacagagcggttcatggatttcaattccgaacagcatttttatccattatgtactttgaccagttcatttccaagcgaacactttctgtggcttgcttatctttggctgcaaaaatggaggagcaaagaaatccattactatcagagtataaagttgaagattgcataattgaaaggagatggattagccaaatggagcttgcggtgttgtccacattaaaatggaggatggatccaataactccattttcttttattgattacttcatcaaaaggttccacttcaacaaggaatatccactagaaacaaaatacgatatcattgaaggattcctcatctatcttacccgagtgataaatgtaatgcaacatcgaccatctgtcttagcagctgccgccaccataatggcatatgatcaccaattaacgagagcaggactggaagcgaagataaagtccttcccaattctgaagcttttggaaattgacgatgtgtgttcaatctacgaaatcttgcaagagaaggaagacaatgtgaagtctacgaggccacgagatttctcaccagccgattggagctcaggaagtgattctgctagagaaaccgtgatcagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

291

Amino Acids

34.03

Weight (kDa)

5.13

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012580)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33190
malus_domestica	MD08G1085300.v1.1 MD08G1085700.v1.1 MD15G1070900.v1.1
prunus_persica	Prupe.1G423600_v2.0.a1
pyrus_communis	pycom08g07030 pycom15g06670
rosa_chinensis	RchiOBHm_Chr6g0309481
rosa_laevigata	RLG00000010562
rosa_multiflora	Rmu_sc0001212.1_g000003 Rmu_sc0007283.1_g000002 Rmu_sc0022500.1_g000003
rosa_roxburghii	Rroxscaffold_7G00159370
rosa_rugosa	Rorug06G0372300
rosa_samantha	Rh6AG485500 Rh6BG494900 Rh6CG499900 Rh6DG485900
rosa_wichuraiana	Rw6G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccBSI	CCGCTC	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	800
AciI	CCGC	3 cut(s)	266, 461, 654
AclWI	GGATC	3 cut(s)	113, 485, 498
AcuI	CTGAAG	1 cut(s)	749
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgeI	ACCGGT	1 cut(s)	228
AgsI	TTSAA	7 cut(s)	181, 281, 416, 431, 544, 584, 759
AhdI	GACNNNNNGTC	1 cut(s)	638
AluBI	AGCT	5 cut(s)	457, 650, 733, 837, 873
AluI	AGCT	5 cut(s)	457, 650, 733, 837, 873
Alw21I	GWGCWC	2 cut(s)	141, 839
AlwI	GGATC	3 cut(s)	113, 485, 498
Ama87I	CYCGRG	1 cut(s)	606
AoxI	GGCC	1 cut(s)	806
ApeKI	GCWGC	3 cut(s)	365, 647, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	698, 730
AsiGI	ACCGGT	1 cut(s)	228
Asp700I	GAANNNNTTC	2 cut(s)	340, 847
AsuHPI	GGTGA	2 cut(s)	668, 813
AvaI	CYCGRG	1 cut(s)	606
BamHI	GGATCC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	839
BauI	CACGAG	1 cut(s)	810
BbsI	GAAGAC	1 cut(s)	792
Bbv12I	GWGCWC	2 cut(s)	141, 839
BbvI	GCAGC	3 cut(s)	352, 637, 659
BccI	CCATC	3 cut(s)	432, 481, 643
BclI	TGATCA	2 cut(s)	673, 867
BfaI	CTAG	3 cut(s)	560, 855, 874
BglI	GCCNNNNNGGC	1 cut(s)	56
BisI	GCNGC	4 cut(s)	366, 648, 651, 654
BlsI	GCNGC	4 cut(s)	367, 649, 652, 655
BmeRI	GACNNNNNGTC	1 cut(s)	638
BmeT110I	CYCGRG	1 cut(s)	606
BmiI	GGNNCC	2 cut(s)	492, 536
BpiI	GAAGAC	1 cut(s)	792
Bpu10I	CCTNAGC	1 cut(s)	838
BpuEI	CTTGAG	1 cut(s)	176
BsaWI	WCCGGW	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse118I	RCCGGY	1 cut(s)	228
Bse1I	ACTGG	2 cut(s)	319, 702
Bse3DI	GCAATG	1 cut(s)	125
BseGI	GGATG	1 cut(s)	492
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	852
BseNI	ACTGG	2 cut(s)	319, 702
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	3 cut(s)	352, 637, 659
BshFI	GGCC	1 cut(s)	808
BshTI	ACCGGT	1 cut(s)	228
BsiHKAI	GWGCWC	2 cut(s)	141, 839
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	246
BsnI	GGCC	1 cut(s)	808
BsoBI	CYCGRG	1 cut(s)	606
Bsp1286I	GDGCHC	2 cut(s)	141, 839
Bsp143I	GATC	5 cut(s)	10, 118, 490, 673, 867
BspACI	CCGC	3 cut(s)	266, 461, 654
BspANI	GGCC	1 cut(s)	808
BspCNI	CTCAG	1 cut(s)	851
BspLI	GGNNCC	2 cut(s)	492, 536
BspPI	GGATC	3 cut(s)	113, 485, 498
BspQI	GCTCTTC	1 cut(s)	129
BsrBI	CCGCTC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	319, 702
BssAI	RCCGGY	1 cut(s)	228
BssMI	GATC	5 cut(s)	10, 118, 490, 673, 867
BssSI	CACGAG	1 cut(s)	810
Bst2BI	CACGAG	1 cut(s)	810
Bst4CI	ACNGT	1 cut(s)	865
Bst6I	CTCTTC	1 cut(s)	129
BstC8I	GCNNGC	4 cut(s)	61, 237, 352, 459
BstDEI	CTNAG	2 cut(s)	643, 838
BstF5I	GGATG	1 cut(s)	492
BstKTI	GATC	5 cut(s)	13, 121, 493, 676, 870
BstMBI	GATC	5 cut(s)	10, 118, 490, 673, 867
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 136, 653
BstV1I	GCAGC	3 cut(s)	352, 637, 659
BstV2I	GAAGAC	1 cut(s)	792
BstX2I	RGATCY	1 cut(s)	490
BstXI	CCANNNNNNTGG	2 cut(s)	664, 831
BstYI	RGATCY	1 cut(s)	490
BsuRI	GGCC	1 cut(s)	808
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	4 cut(s)	61, 237, 352, 459
Cfr10I	RCCGGY	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	310
CspAI	ACCGGT	1 cut(s)	228
CviAII	CATG	1 cut(s)	272
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	2 cut(s)	643, 838
DpnI	GATC	5 cut(s)	12, 120, 492, 675, 869
DpnII	GATC	5 cut(s)	10, 118, 490, 673, 867
DriI	GACNNNNNGTC	1 cut(s)	638
Eam1104I	CTCTTC	1 cut(s)	129
Eam1105I	GACNNNNNGTC	1 cut(s)	638
EarI	CTCTTC	1 cut(s)	129
Ecl136II	GAGCTC	1 cut(s)	837
Eco24I	GRGCYC	1 cut(s)	839
Eco32I	GATATC	1 cut(s)	577
Eco53kI	GAGCTC	1 cut(s)	837
Eco57I	CTGAAG	1 cut(s)	749
Eco88I	CYCGRG	1 cut(s)	606
EcoICRI	GAGCTC	1 cut(s)	837
EcoRV	GATATC	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	839
FaeI	CATG	1 cut(s)	275
FaiI	YATR	9 cut(s)	96, 117, 273, 308, 408, 425, 662, 670, 672
FatI	CATG	1 cut(s)	271
FauNDI	CATATG	1 cut(s)	670
FbaI	TGATCA	2 cut(s)	673, 867
FblI	GTMKAC	1 cut(s)	800
Fnu4HI	GCNGC	4 cut(s)	366, 648, 651, 654
FokI	GGATG	1 cut(s)	499
FriOI	GRGCYC	1 cut(s)	839
Fsp4HI	GCNGC	4 cut(s)	366, 648, 651, 654
FspBI	CTAG	3 cut(s)	560, 855, 874
GluI	GCNGC	4 cut(s)	366, 648, 651, 654
HaeIII	GGCC	1 cut(s)	808
HapII	CCGG	1 cut(s)	229
Hin1II	CATG	1 cut(s)	275
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	4 cut(s)	177, 250, 588, 848
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	2 cut(s)	668, 813
Hpy166II	GTNNAC	2 cut(s)	471, 801
Hpy188I	TCNGA	5 cut(s)	70, 221, 287, 403, 729
Hpy188III	TCNNGA	1 cut(s)	840
Hpy8I	GTNNAC	2 cut(s)	471, 801
HpyAV	CCTTC	5 cut(s)	154, 188, 578, 727, 775
HpyCH4III	ACNGT	1 cut(s)	865
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	7 cut(s)	125, 130, 235, 368, 423, 625, 775
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 136, 653
HpyF3I	CTNAG	2 cut(s)	643, 838
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	275
Ksp22I	TGATCA	2 cut(s)	673, 867
Kzo9I	GATC	5 cut(s)	10, 118, 490, 673, 867
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	3 cut(s)	379, 454, 834
LpnPI	CCDG	8 cut(s)	60, 135, 242, 332, 678, 683, 825, 837
Lsp1109I	GCAGC	3 cut(s)	352, 637, 659
MaeI	CTAG	3 cut(s)	560, 855, 874
MaeII	ACGT	1 cut(s)	141
MalI	GATC	5 cut(s)	12, 120, 492, 675, 869
MbiI	CCGCTC	1 cut(s)	266
MboI	GATC	5 cut(s)	10, 118, 490, 673, 867
MboII	GAAGA	4 cut(s)	146, 428, 718, 797
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	2 cut(s)	141, 839
MluCI	AATT	5 cut(s)	281, 426, 680, 723, 741
MnlI	CCTC	5 cut(s)	64, 370, 477, 602, 798
MroXI	GAANNNNTTC	2 cut(s)	340, 847
MseI	TTAA	4 cut(s)	20, 243, 476, 683
MslI	CAYNNNNRTG	2 cut(s)	478, 662
MspA1I	CMGCKG	1 cut(s)	650
MspI	CCGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	3 cut(s)	56, 136, 653
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	5 cut(s)	10, 118, 490, 673, 867
NlaIII	CATG	1 cut(s)	275
NlaIV	GGNNCC	2 cut(s)	492, 536
PciSI	GCTCTTC	1 cut(s)	129
PdmI	GAANNNNTTC	2 cut(s)	340, 847
PfeI	GAWTC	4 cut(s)	177, 250, 588, 848
PflMI	CCANNNNNTGG	1 cut(s)	246
PinAI	ACCGGT	1 cut(s)	228
PkrI	GCNGC	4 cut(s)	367, 649, 652, 655
Psp124BI	GAGCTC	1 cut(s)	839
PspN4I	GGNNCC	2 cut(s)	492, 536
PsuI	RGATCY	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
RseI	CAYNNNNRTG	2 cut(s)	478, 662
SacI	GAGCTC	1 cut(s)	839
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	4 cut(s)	20, 243, 476, 683
SatI	GCNGC	4 cut(s)	366, 648, 651, 654
Sau3AI	GATC	5 cut(s)	10, 118, 490, 673, 867
SduI	GDGCHC	2 cut(s)	141, 839
SetI	ASST	8 cut(s)	75, 144, 459, 536, 652, 735, 839, 875
SmiMI	CAYNNNNRTG	2 cut(s)	478, 662
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	5 cut(s)	281, 426, 680, 723, 741
SsiI	CCGC	3 cut(s)	266, 461, 654
SspMI	CTAG	3 cut(s)	560, 855, 874
SstI	GAGCTC	1 cut(s)	839
TaaI	ACNGT	1 cut(s)	865
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	78, 631
TasI	AATT	5 cut(s)	281, 426, 680, 723, 741
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	1 cut(s)	656
TfiI	GAWTC	4 cut(s)	177, 250, 588, 848
Tru1I	TTAA	4 cut(s)	20, 243, 476, 683
Tru9I	TTAA	4 cut(s)	20, 243, 476, 683
TscAI	CASTG	1 cut(s)	109
TseI	GCWGC	3 cut(s)	365, 647, 650
TspDTI	ATGAA	4 cut(s)	207, 260, 313, 514
TspRI	CASTG	1 cut(s)	109
Van91I	CCANNNNNTGG	1 cut(s)	246
XmiI	GTMKAC	1 cut(s)	800
XmnI	GAANNNNTTC	2 cut(s)	340, 847
XspI	CTAG	3 cut(s)	560, 855, 874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.