Rh6BG494900

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0012580
Physical Location & Seq
Forward (+)
69638966 .. 69640989
2024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG494900.1

Sequence Viewer

Length: 684 bp
ATGCTTCAATTTATTTGGTCTTTGATTCAGAACAGAGCGGTTCATGGATTTCAATTCCGAACAGCATTTTTATCCATTATGTACTTTGACCAGTTCATTTCCAAGCGGTCCTTCAAGGGCAATAAAACAACTTGGCTCAGAACACTTTCTGTGGCTTGCTTATCTTTGGCTGCAAAAATGGAGGAGCAAAGAAATCCATTACTATCAGAGTATAAAGTTGAAGATTGCATAATTGAAAGGAGATGGATTAGCCAAATGGAGCTTGCGGTGTTGTCCACATTAAAATGGAGGATGGATCCAATAACTCCATTTGCTTTTATTGATTACTTCATCAAAAGGTTCCACTTCAACAAGGAACATCCACTAGAAACAAAATACGATATCATTGAAGGATTCCTCATCTATCTTACCCGAGTGATAAATGTAATGCAACATCGACCATCTGTCTTAGCAGCTGCCGCCACCATAATGGCATATGATCACCAATTAACGAGAGCAGGACTGGAAGCGAAGATAAAGTCCTTCCCAACTCTGAAGCTTTTGGAAATTGAAGATGTGTGTTCAATCTACGAAATCTTGCAAGAGAAGGAAGACAATGTGAAGTCTACAAGGCCACCAGATTTCTCACCAGCCAATTGGAGCTCAGGAAGTGATTCTGCTAGAGAAACTGTGATCAGCTTGTAG

Protein Analysis

227

Amino Acids

26.48

Weight (kDa)

8.37

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 8 - 98 2.9e-15 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 605
AciI CCGC 4 cut(s) 38, 106, 266, 459
AclWI GGATC 2 cut(s) 290, 303
AcuI CTGAAG 1 cut(s) 554
AfaI GTAC 1 cut(s) 83
AgsI TTSAA 9 cut(s) 8, 53, 115, 221, 236, 349, 389, 551, 564
AhdI GACNNNNNGTC 1 cut(s) 443
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 5 cut(s) 262, 455, 538, 642, 678
AluI AGCT 5 cut(s) 262, 455, 538, 642, 678
Alw21I GWGCWC 1 cut(s) 644
AlwI GGATC 2 cut(s) 290, 303
Ama87I CYCGRG 1 cut(s) 411
AoxI GGCC 1 cut(s) 611
ApeKI GCWGC 3 cut(s) 170, 452, 455
ArsI GACNNNNNNTTYG 2 cut(s) 503, 535
Asp700I GAANNNNTTC 2 cut(s) 145, 652
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 473, 618
AvaI CYCGRG 1 cut(s) 411
AvaII GGWCC 1 cut(s) 108
BamHI GGATCC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 644
BbsI GAAGAC 1 cut(s) 597
Bbv12I GWGCWC 1 cut(s) 644
BbvI GCAGC 3 cut(s) 157, 442, 464
BccI CCATC 3 cut(s) 237, 286, 448
BclI TGATCA 2 cut(s) 478, 672
BfaI CTAG 2 cut(s) 365, 660
BisI GCNGC 4 cut(s) 171, 453, 456, 459
BlsI GCNGC 4 cut(s) 172, 454, 457, 460
Bme18I GGWCC 1 cut(s) 108
BmeRI GACNNNNNGTC 1 cut(s) 443
BmeT110I CYCGRG 1 cut(s) 411
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 2 cut(s) 297, 341
BpiI GAAGAC 1 cut(s) 597
Bpu10I CCTNAGC 1 cut(s) 643
Bse1I ACTGG 2 cut(s) 91, 507
BseGI GGATG 2 cut(s) 297, 358
BseMII CTCAG 2 cut(s) 151, 657
BseNI ACTGG 2 cut(s) 91, 507
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 3 cut(s) 157, 442, 464
BshFI GGCC 1 cut(s) 613
BsiHKAI GWGCWC 1 cut(s) 644
BsiHKCI CYCGRG 1 cut(s) 411
BsnI GGCC 1 cut(s) 613
BsoBI CYCGRG 1 cut(s) 411
Bsp1286I GDGCHC 1 cut(s) 644
Bsp143I GATC 3 cut(s) 295, 478, 672
BspACI CCGC 4 cut(s) 38, 106, 266, 459
BspANI GGCC 1 cut(s) 613
BspCNI CTCAG 2 cut(s) 150, 656
BspLI GGNNCC 2 cut(s) 297, 341
BspPI GGATC 2 cut(s) 290, 303
BsrBI CCGCTC 1 cut(s) 38
BsrI ACTGG 2 cut(s) 91, 507
BssMI GATC 3 cut(s) 295, 478, 672
Bst4CI ACNGT 1 cut(s) 670
BstC8I GCNNGC 2 cut(s) 157, 264
BstDEI CTNAG 3 cut(s) 137, 448, 643
BstF5I GGATG 2 cut(s) 297, 358
BstKTI GATC 3 cut(s) 298, 481, 675
BstMBI GATC 3 cut(s) 295, 478, 672
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstV1I GCAGC 3 cut(s) 157, 442, 464
BstV2I GAAGAC 1 cut(s) 597
BstX2I RGATCY 1 cut(s) 295
BstXI CCANNNNNNTGG 2 cut(s) 469, 636
BstYI RGATCY 1 cut(s) 295
BsuRI GGCC 1 cut(s) 613
BtsCI GGATG 2 cut(s) 297, 358
Cac8I GCNNGC 2 cut(s) 157, 264
Cfr13I GGNCC 1 cut(s) 108
Csp6I GTAC 1 cut(s) 82
CviAII CATG 1 cut(s) 44
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 3 cut(s) 137, 448, 643
DpnI GATC 3 cut(s) 297, 480, 674
DpnII GATC 3 cut(s) 295, 478, 672
DriI GACNNNNNGTC 1 cut(s) 443
Eam1105I GACNNNNNGTC 1 cut(s) 443
Ecl136II GAGCTC 1 cut(s) 642
Eco24I GRGCYC 1 cut(s) 644
Eco32I GATATC 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 642
Eco57I CTGAAG 1 cut(s) 554
Eco88I CYCGRG 1 cut(s) 411
EcoICRI GAGCTC 1 cut(s) 642
EcoRV GATATC 1 cut(s) 382
EcoT38I GRGCYC 1 cut(s) 644
FaeI CATG 1 cut(s) 47
FaiI YATR 7 cut(s) 45, 80, 213, 230, 467, 475, 477
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FatI CATG 1 cut(s) 43
FauNDI CATATG 1 cut(s) 475
FbaI TGATCA 2 cut(s) 478, 672
FblI GTMKAC 1 cut(s) 605
Fnu4HI GCNGC 4 cut(s) 171, 453, 456, 459
FokI GGATG 2 cut(s) 304, 345
FriOI GRGCYC 1 cut(s) 644
Fsp4HI GCNGC 4 cut(s) 171, 453, 456, 459
FspBI CTAG 2 cut(s) 365, 660
GluI GCNGC 4 cut(s) 171, 453, 456, 459
HaeIII GGCC 1 cut(s) 613
Hin1II CATG 1 cut(s) 47
HindIII AAGCTT 1 cut(s) 536
HinfI GANTC 3 cut(s) 25, 393, 653
HphI GGTGA 2 cut(s) 473, 618
Hpy166II GTNNAC 2 cut(s) 276, 606
Hpy188I TCNGA 5 cut(s) 30, 59, 140, 208, 534
Hpy188III TCNNGA 1 cut(s) 645
Hpy8I GTNNAC 2 cut(s) 276, 606
HpyAV CCTTC 4 cut(s) 121, 383, 532, 580
HpyCH4III ACNGT 1 cut(s) 670
HpyCH4V TGCA 4 cut(s) 173, 228, 430, 580
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
HpyF3I CTNAG 3 cut(s) 137, 448, 643
Hsp92II CATG 1 cut(s) 47
Ksp22I TGATCA 2 cut(s) 478, 672
Kzo9I GATC 3 cut(s) 295, 478, 672
LmnI GCTCC 3 cut(s) 184, 259, 639
LpnPI CCDG 6 cut(s) 104, 483, 488, 630, 630, 642
Lsp1109I GCAGC 3 cut(s) 157, 442, 464
MaeI CTAG 2 cut(s) 365, 660
MalI GATC 3 cut(s) 297, 480, 674
MbiI CCGCTC 1 cut(s) 38
MboI GATC 3 cut(s) 295, 478, 672
MboII GAAGA 4 cut(s) 233, 523, 563, 602
MfeI CAATTG 1 cut(s) 634
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 1 cut(s) 644
MluCI AATT 6 cut(s) 8, 53, 231, 485, 546, 634
MnlI CCTC 3 cut(s) 175, 282, 407
MroXI GAANNNNTTC 2 cut(s) 145, 652
MseI TTAA 2 cut(s) 281, 488
MslI CAYNNNNRTG 2 cut(s) 283, 467
MspA1I CMGCKG 1 cut(s) 455
MunI CAATTG 1 cut(s) 634
MwoI GCNNNNNNNGC 1 cut(s) 458
NdeI CATATG 1 cut(s) 475
NdeII GATC 3 cut(s) 295, 478, 672
NlaIII CATG 1 cut(s) 47
NlaIV GGNNCC 2 cut(s) 297, 341
PdmI GAANNNNTTC 2 cut(s) 145, 652
PfeI GAWTC 3 cut(s) 25, 393, 653
PkrI GCNGC 4 cut(s) 172, 454, 457, 460
Psp124BI GAGCTC 1 cut(s) 644
PspN4I GGNNCC 2 cut(s) 297, 341
PspPI GGNCC 1 cut(s) 108
PsuI RGATCY 1 cut(s) 295
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
RseI CAYNNNNRTG 2 cut(s) 283, 467
SacI GAGCTC 1 cut(s) 644
SaqAI TTAA 2 cut(s) 281, 488
SatI GCNGC 4 cut(s) 171, 453, 456, 459
Sau3AI GATC 3 cut(s) 295, 478, 672
Sau96I GGNCC 1 cut(s) 108
SduI GDGCHC 1 cut(s) 644
SetI ASST 6 cut(s) 264, 341, 457, 540, 644, 680
SinI GGWCC 1 cut(s) 108
SmiMI CAYNNNNRTG 2 cut(s) 283, 467
Sse9I AATT 6 cut(s) 8, 53, 231, 485, 546, 634
SsiI CCGC 4 cut(s) 38, 106, 266, 459
SspMI CTAG 2 cut(s) 365, 660
SstI GAGCTC 1 cut(s) 644
TaaI ACNGT 1 cut(s) 670
TaqI TCGA 1 cut(s) 436
TasI AATT 6 cut(s) 8, 53, 231, 485, 546, 634
TatI WGTACW 1 cut(s) 81
TauI GCSGC 1 cut(s) 461
TfiI GAWTC 3 cut(s) 25, 393, 653
Tru1I TTAA 2 cut(s) 281, 488
Tru9I TTAA 2 cut(s) 281, 488
TseI GCWGC 3 cut(s) 170, 452, 455
TspDTI ATGAA 3 cut(s) 32, 85, 319
VpaK11BI GGWCC 1 cut(s) 108
XmiI GTMKAC 1 cut(s) 605
XmnI GAANNNNTTC 2 cut(s) 145, 652
XspI CTAG 2 cut(s) 365, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.