Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0012580

Physical Location & Seq

Genomic Coordinates Reverse (-)

7079575 .. 7080877

Gene Structure 1303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1085300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCGTTTGCATTGGAAGAACAGCAGTTGCAGAACTTAATCCACAGAGAGATCGAATTTGGGTTCGGGAAAGACGAAGATTTGGTGATTCCCACCTGGGTTTTGGACGCTCGATTGGAATCCATCACATGGGTTCTCCAGAGAAGAACGGGTCTTGGATTTCATCCTAGAACAGCATATTTGTGCATGACATACTTTGATCGGTTCATTTCCCTGAGACAAATCCCTGTTGCTATGGTTAGATTGCTTTCTGTGGCGTGTCTATCTCTGGCTGCAAAGATGAAGGAGCAGAACATTCCATCACTGTCGCAATATGAAGTCGAAAATCCTCACTTTTTCGAAGGAAAACTGATTCAGAAAATGGAGCTTATGGTGTTGGGAGCACTGGAATGGAACATGAATATCATCACACCCTTCTCGTTTGTCGATTACTTCATCTCCAAGTTGTGCCAAGAATCTCCATCTGATGTAAAATTAAAGATTGAAGACCTCCTCCTTTCTGTGATCACAGAGATTAATTTGATGCATCAACGACCGTCAGCTGTAGCAGCCGCCGCCACCTTGATGGCATTGGATCAGAAATTAACAAAAGAAGCATTGGAACTAAAGATAAACTCCATACCAGAACTGAAACTTTCGGAAATTGAAGCTGTGTTTTCATGCTACAATATACTGCAGGAGCTAAGGACGGAGAAACCTAAAGAACCCGTGTCCGTAAAAATCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

243

Amino Acids

27.75

Weight (kDa)

5.27

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	34 - 134	3.2e-22	Cyclin, N-terminal domain
Cyclin_C	PF02984	136 - 231	1.5e-06	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012580)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33190
malus_domestica	MD08G1085300.v1.1 MD08G1085700.v1.1 MD15G1070900.v1.1
prunus_persica	Prupe.1G423600_v2.0.a1
pyrus_communis	pycom08g07030 pycom15g06670
rosa_chinensis	RchiOBHm_Chr6g0309481
rosa_laevigata	RLG00000010562
rosa_multiflora	Rmu_sc0001212.1_g000003 Rmu_sc0007283.1_g000002 Rmu_sc0022500.1_g000003
rosa_roxburghii	Rroxscaffold_7G00159370
rosa_rugosa	Rorug06G0372300
rosa_samantha	Rh6AG485500 Rh6BG494900 Rh6CG499900 Rh6DG485900
rosa_wichuraiana	Rw6G042290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	129
AciI	CCGC	2 cut(s)	552, 555
AclWI	GGATC	1 cut(s)	582
AcsI	RAATTY	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	485, 647
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	4 cut(s)	367, 542, 650, 682
AluI	AGCT	4 cut(s)	367, 542, 650, 682
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	582
ApeKI	GCWGC	2 cut(s)	272, 548
ApoI	RAATTY	1 cut(s)	56
AseI	ATTAAT	1 cut(s)	516
AsuHPI	GGTGA	1 cut(s)	97
AsuII	TTCGAA	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	2 cut(s)	259, 560
BccI	CCATC	4 cut(s)	131, 307, 469, 559
BciT130I	CCWGG	1 cut(s)	97
BclI	TGATCA	1 cut(s)	504
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	2 cut(s)	543, 674
BisI	GCNGC	4 cut(s)	273, 549, 552, 555
BlsI	GCNGC	4 cut(s)	274, 550, 553, 556
Bme1390I	CCNGG	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	2 cut(s)	513, 535
BpiI	GAAGAC	1 cut(s)	492
BpmI	CTGGAG	1 cut(s)	122
Bpu10I	CCTNAGC	1 cut(s)	683
Bpu14I	TTCGAA	1 cut(s)	339
Bsa29I	ATCGAT	1 cut(s)	723
BsaBI	GATNNNNATC	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	390
Bse8I	GATNNNNATC	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	97
BseCI	ATCGAT	1 cut(s)	723
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	163
BseJI	GATNNNNATC	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	206
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	1 cut(s)	482
BseXI	GCAGC	2 cut(s)	259, 560
Bsh1285I	CGRYCG	1 cut(s)	536
BshVI	ATCGAT	1 cut(s)	723
BsiEI	CGRYCG	1 cut(s)	536
BsiHKAI	GWGCWC	1 cut(s)	385
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	211
Bsp119I	TTCGAA	1 cut(s)	339
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp143I	GATC	4 cut(s)	51, 199, 504, 574
BspACI	CCGC	2 cut(s)	552, 555
BspCNI	CTCAG	1 cut(s)	207
BspDI	ATCGAT	1 cut(s)	723
BspMAI	CTGCAG	1 cut(s)	678
BspPI	GGATC	1 cut(s)	582
BspT104I	TTCGAA	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	390
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	4 cut(s)	51, 199, 504, 574
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	2 cut(s)	306, 537
BstBI	TTCGAA	1 cut(s)	339
BstDEI	CTNAG	2 cut(s)	215, 683
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	4 cut(s)	54, 202, 507, 577
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	4 cut(s)	51, 199, 504, 574
BstMCI	CGRYCG	1 cut(s)	536
BstMWI	GCNNNNNNNGC	2 cut(s)	548, 554
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	95
BstSFI	CTRYAG	2 cut(s)	543, 674
BstV1I	GCAGC	2 cut(s)	259, 560
BstV2I	GAAGAC	1 cut(s)	492
BstXI	CCANNNNNNTGG	1 cut(s)	565
Bsu15I	ATCGAT	1 cut(s)	723
BsuTUI	ATCGAT	1 cut(s)	723
BtsCI	GGATG	1 cut(s)	163
BtsIMutI	CAGTG	2 cut(s)	302, 383
ClaI	ATCGAT	1 cut(s)	723
CseI	GACGC	1 cut(s)	116
CviAII	CATG	4 cut(s)	129, 187, 397, 660
CviJI	RGCY	6 cut(s)	272, 367, 542, 551, 650, 682
CviKI_1	RGCY	6 cut(s)	272, 367, 542, 551, 650, 682
DdeI	CTNAG	2 cut(s)	215, 683
DpnI	GATC	4 cut(s)	53, 201, 506, 576
DpnII	GATC	4 cut(s)	51, 199, 504, 574
EcoRII	CCWGG	1 cut(s)	95
EcoT22I	ATGCAT	1 cut(s)	528
FaeI	CATG	4 cut(s)	132, 190, 400, 663
FatI	CATG	4 cut(s)	128, 186, 396, 659
FbaI	TGATCA	1 cut(s)	504
Fnu4HI	GCNGC	4 cut(s)	273, 549, 552, 555
FokI	GGATG	1 cut(s)	150
Fsp4HI	GCNGC	4 cut(s)	273, 549, 552, 555
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	4 cut(s)	273, 549, 552, 555
GsuI	CTGGAG	1 cut(s)	122
HgaI	GACGC	1 cut(s)	116
Hin1II	CATG	4 cut(s)	132, 190, 400, 663
HinfI	GANTC	4 cut(s)	88, 119, 352, 455
HphI	GGTGA	1 cut(s)	97
Hpy188I	TCNGA	4 cut(s)	357, 466, 579, 640
Hpy188III	TCNNGA	2 cut(s)	67, 139
HpyAV	CCTTC	3 cut(s)	277, 335, 424
HpyCH4III	ACNGT	2 cut(s)	306, 537
HpyCH4V	TGCA	6 cut(s)	11, 31, 186, 275, 526, 676
HpyF10VI	GCNNNNNNNGC	2 cut(s)	548, 554
HpyF3I	CTNAG	2 cut(s)	215, 683
Hsp92II	CATG	4 cut(s)	132, 190, 400, 663
Ksp22I	TGATCA	1 cut(s)	504
Kzo9I	GATC	4 cut(s)	51, 199, 504, 574
LmnI	GCTCC	4 cut(s)	286, 364, 380, 679
LpnPI	CCDG	9 cut(s)	82, 109, 152, 227, 240, 254, 371, 636, 662
Lsp1109I	GCAGC	2 cut(s)	259, 560
LweI	GCATC	2 cut(s)	513, 535
MaeI	CTAG	1 cut(s)	168
MalI	GATC	4 cut(s)	53, 201, 506, 576
MboI	GATC	4 cut(s)	51, 199, 504, 574
MboII	GAAGA	4 cut(s)	29, 89, 156, 497
MhlI	GDGCHC	1 cut(s)	385
MluCI	AATT	5 cut(s)	56, 473, 517, 581, 642
MnlI	CCTC	3 cut(s)	339, 500, 503
Mph1103I	ATGCAT	1 cut(s)	528
MseI	TTAA	4 cut(s)	38, 476, 516, 584
MslI	CAYNNNNRTG	3 cut(s)	181, 388, 563
MspA1I	CMGCKG	1 cut(s)	542
MspR9I	CCNGG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	2 cut(s)	548, 554
NdeII	GATC	4 cut(s)	51, 199, 504, 574
NlaIII	CATG	4 cut(s)	132, 190, 400, 663
NsiI	ATGCAT	1 cut(s)	528
NspV	TTCGAA	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	4 cut(s)	88, 119, 352, 455
PflMI	CCANNNNNTGG	1 cut(s)	129
PkrI	GCNGC	4 cut(s)	274, 550, 553, 556
PshBI	ATTAAT	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	678
PvuII	CAGCTG	1 cut(s)	542
RseI	CAYNNNNRTG	3 cut(s)	181, 388, 563
SaqAI	TTAA	4 cut(s)	38, 476, 516, 584
SatI	GCNGC	4 cut(s)	273, 549, 552, 555
Sau3AI	GATC	4 cut(s)	51, 199, 504, 574
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	385
SetI	ASST	8 cut(s)	98, 369, 492, 544, 563, 652, 684, 700
SfaNI	GCATC	2 cut(s)	513, 535
SfcI	CTRYAG	2 cut(s)	543, 674
SfuI	TTCGAA	1 cut(s)	339
SmiMI	CAYNNNNRTG	3 cut(s)	181, 388, 563
Sse9I	AATT	5 cut(s)	56, 473, 517, 581, 642
SsiI	CCGC	2 cut(s)	552, 555
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	95
TaaI	ACNGT	2 cut(s)	306, 537
TaqI	TCGA	6 cut(s)	54, 112, 321, 339, 426, 723
TasI	AATT	5 cut(s)	56, 473, 517, 581, 642
TauI	GCSGC	2 cut(s)	554, 557
TfiI	GAWTC	4 cut(s)	88, 119, 352, 455
Tru1I	TTAA	4 cut(s)	38, 476, 516, 584
Tru9I	TTAA	4 cut(s)	38, 476, 516, 584
TscAI	CASTG	2 cut(s)	309, 390
TseI	GCWGC	2 cut(s)	272, 548
TspDTI	ATGAA	7 cut(s)	152, 196, 296, 330, 413, 424, 648
TspGWI	ACGGA	2 cut(s)	703, 704
TspRI	CASTG	2 cut(s)	309, 390
Van91I	CCANNNNNTGG	1 cut(s)	129
VspI	ATTAAT	1 cut(s)	516
XapI	RAATTY	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XspI	CTAG	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.