FvH4_2g33360

Syntaxin 6, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010278
Physical Location & Seq
Forward (+)
25047101 .. 25049907
2807 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33360.t3

Sequence Viewer

Length: 1008 bp
ATGGCGTCGAGTTTTGATCGGTGGGAGAAGGATCCTTATTTCTCGGCCGCCGAGCAAGTTCAAGAATCTGCCGACAGGATGGAATCCACATATAGAACATGGGTTCACGCCAAGAAAGACAGTTCCAGTATGTGGAATCCGGAGGAACTCGGCAGGGATCTCCGCACAACTCTTGGAACTACCAAATGGCAGTTAGATGAGTTTGCACGAGCGGTCAGGGCAAGTTATGCTAGAGGCCCAAGTGAAGACGCAAGAGATAGGCACCACGAATTCATTGTTGCTATGGAGGACCAGATTTCTAAAGTTGAAAATGCATTACGGGAATCTGCCTTGTCTGAGGGAAAGAGTTCTCTACCTTGGGTGCGGTTGGACAAAGGAGAGTGTGACGAACTAGCTTCTTTTCTTTCTGGACTGACTGCTTCTGAAGAGAAAGTTGTTGCTAAGAGTAGAGATATTGGAAACCTACAAGTGAAGGATGGAGAATCAGCACCGGATTGTTCAAAGAACTTGTGCGGTTTCCCGGAGGCAAGGGAGGACAAATCACATGGGCATAGGAGGACAGCTAGTGCTGCTGATATTGGTTCGTGGAAGATTGCGGTCTATGATGATGGTCGCTTACCATCTTCTTCTGCTATGATGATTGAACAACCTGTGCGAAAGATACCCAGTTTCTCTGGGTTTATTAGTTCCATGGAATCTGCGTCAAAGTTGAAGTGGTCAAAGAATGGTTTTAGGAAGTGGAAGGCAGTGGACCGTCATGAAGACACTGGTGCTGCATTGTTACCATCTTCTCAGTTTAACAGGGGAATTGATGCTTGCTATGAAAGAAGCAAGAGTTGTTTGGATAGTGATTGCTATGATAAACAATTATATGGCTGGTATGGAGCTATTCAGAGACAGCTTCAACGATCTCAGTACTATGTGCAGTATAGTTGGCCTGCTCATGTAGCTTTTTGGACAGTTCTTCTCCTTTGCTTGATTTTTTTGATTGCATTCCGTGCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Syntaxin-6_N

Protein Analysis

336

Amino Acids

37.99

Weight (kDa)

6.42

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STX6_10_61_N PF09177 11 - 103 6.8e-20 Syntaxin 6/10/61, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 261
AccB7I CCANNNNNTGG 1 cut(s) 132
AccBSI CCGCTC 1 cut(s) 212
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 6 cut(s) 48, 163, 212, 364, 513, 596
AclWI GGATC 3 cut(s) 26, 39, 165
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 444
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 917
AfiI CCNNNNNNNGG 1 cut(s) 132
AgsI TTSAA 6 cut(s) 62, 308, 501, 644, 712, 905
AluBI AGCT 5 cut(s) 395, 563, 887, 901, 950
AluI AGCT 5 cut(s) 395, 563, 887, 901, 950
Alw26I GTCTC 1 cut(s) 889
AlwI GGATC 3 cut(s) 26, 39, 165
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 3 cut(s) 45, 235, 935
ApeKI GCWGC 2 cut(s) 569, 773
ApoI RAATTY 1 cut(s) 269
Asp700I GAANNNNTTC 1 cut(s) 346
AspS9I GGNCC 3 cut(s) 236, 289, 751
AsuC2I CCSGG 1 cut(s) 521
AvaII GGWCC 2 cut(s) 289, 751
BamHI GGATCC 1 cut(s) 31
BanI GGYRCC 1 cut(s) 261
BauI CACGAG 1 cut(s) 207
BbsI GAAGAC 2 cut(s) 252, 768
BbvI GCAGC 2 cut(s) 556, 760
BccI CCATC 5 cut(s) 73, 470, 602, 628, 793
BcnI CCSGG 1 cut(s) 521
BcoDI GTCTC 1 cut(s) 889
BfaI CTAG 3 cut(s) 231, 392, 564
BisI GCNGC 3 cut(s) 48, 570, 774
BlsI GCNGC 3 cut(s) 49, 571, 775
BmcAI AGTACT 1 cut(s) 917
Bme1390I CCNGG 1 cut(s) 521
Bme18I GGWCC 2 cut(s) 289, 751
BmgT120I GGNCC 3 cut(s) 236, 289, 751
BmiI GGNNCC 2 cut(s) 33, 263
BmrFI CCNGG 1 cut(s) 521
BmrI ACTGGG 1 cut(s) 660
BmsI GCATC 1 cut(s) 802
BmuI ACTGGG 1 cut(s) 660
BpiI GAAGAC 2 cut(s) 252, 768
BpuMI CCSGG 1 cut(s) 521
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 356, 690
BsaWI WCCGGW 2 cut(s) 139, 490
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse1I ACTGG 3 cut(s) 126, 666, 772
BseAI TCCGGA 1 cut(s) 139
BseDI CCNNGG 2 cut(s) 356, 690
BseGI GGATG 2 cut(s) 84, 481
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMII CTCAG 3 cut(s) 327, 806, 926
BseNI ACTGG 3 cut(s) 126, 666, 772
BseX3I CGGCCG 1 cut(s) 45
BseXI GCAGC 2 cut(s) 556, 760
BsgI GTGCAG 1 cut(s) 944
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 3 cut(s) 47, 237, 937
BshNI GGYRCC 1 cut(s) 261
BsiEI CGRYCG 1 cut(s) 48
BsiSI CCGG 3 cut(s) 140, 491, 521
BslI CCNNNNNNNGG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 889
BsmI GAATGC 1 cut(s) 992
BsnI GGCC 3 cut(s) 47, 237, 937
Bsp13I TCCGGA 1 cut(s) 139
Bsp143I GATC 4 cut(s) 16, 31, 157, 908
Bsp19I CCATGG 1 cut(s) 690
BspACI CCGC 6 cut(s) 48, 163, 212, 364, 513, 596
BspANI GGCC 3 cut(s) 47, 237, 937
BspCNI CTCAG 3 cut(s) 328, 805, 925
BspEI TCCGGA 1 cut(s) 139
BspHI TCATGA 1 cut(s) 757
BspLI GGNNCC 2 cut(s) 33, 263
BspPI GGATC 3 cut(s) 26, 39, 165
BspT107I GGYRCC 1 cut(s) 261
BsrBI CCGCTC 1 cut(s) 212
BsrI ACTGG 3 cut(s) 126, 666, 772
BssECI CCNNGG 2 cut(s) 356, 690
BssMI GATC 4 cut(s) 16, 31, 157, 908
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 207
BssT1I CCWWGG 2 cut(s) 356, 690
Bst2BI CACGAG 1 cut(s) 207
Bst4CI ACNGT 3 cut(s) 122, 755, 961
Bst6I CTCTTC 1 cut(s) 420
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 2 cut(s) 227, 998
BstC8I GCNNGC 2 cut(s) 817, 939
BstDEI CTNAG 4 cut(s) 336, 441, 792, 912
BstDSI CCRYGG 1 cut(s) 690
BstF5I GGATG 2 cut(s) 84, 481
BstKTI GATC 4 cut(s) 19, 34, 160, 911
BstMAI GTCTC 1 cut(s) 889
BstMBI GATC 4 cut(s) 16, 31, 157, 908
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 5 cut(s) 218, 227, 569, 947, 998
BstSCI CCNGG 1 cut(s) 519
BstV1I GCAGC 2 cut(s) 556, 760
BstV2I GAAGAC 2 cut(s) 252, 768
BstX2I RGATCY 2 cut(s) 31, 157
BstYI RGATCY 2 cut(s) 31, 157
BstZI CGGCCG 1 cut(s) 45
BsuRI GGCC 3 cut(s) 47, 237, 937
BtgI CCRYGG 1 cut(s) 690
BtsCI GGATG 2 cut(s) 84, 481
BtsI GCAGTG 1 cut(s) 753
BtsIMutI CAGTG 2 cut(s) 753, 765
Cac8I GCNNGC 2 cut(s) 817, 939
CciI TCATGA 1 cut(s) 757
Cfr13I GGNCC 3 cut(s) 236, 289, 751
CseI GACGC 2 cut(s) 257, 690
Csp6I GTAC 1 cut(s) 916
CviAII CATG 5 cut(s) 99, 545, 691, 758, 944
CviJI RGCY 9 cut(s) 47, 237, 395, 563, 876, 887, 901, 937, 950
CviKI_1 RGCY 9 cut(s) 47, 237, 395, 563, 876, 887, 901, 937, 950
CviQI GTAC 1 cut(s) 916
DdeI CTNAG 4 cut(s) 336, 441, 792, 912
DpnI GATC 4 cut(s) 18, 33, 159, 910
DpnII GATC 4 cut(s) 16, 31, 157, 908
EaeI YGGCCR 1 cut(s) 45
EagI CGGCCG 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 420
EclXI CGGCCG 1 cut(s) 45
Eco130I CCWWGG 2 cut(s) 356, 690
Eco47I GGWCC 2 cut(s) 289, 751
Eco52I CGGCCG 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 444
EcoRI GAATTC 1 cut(s) 269
EcoT14I CCWWGG 2 cut(s) 356, 690
EcoT22I ATGCAT 1 cut(s) 316
ErhI CCWWGG 2 cut(s) 356, 690
FaeI CATG 5 cut(s) 102, 548, 694, 761, 947
FatI CATG 5 cut(s) 98, 544, 690, 757, 943
Fnu4HI GCNGC 3 cut(s) 48, 570, 774
FokI GGATG 2 cut(s) 91, 488
Fsp4HI GCNGC 3 cut(s) 48, 570, 774
FspBI CTAG 3 cut(s) 231, 392, 564
GluI GCNGC 3 cut(s) 48, 570, 774
HaeIII GGCC 3 cut(s) 47, 237, 937
HapII CCGG 3 cut(s) 140, 491, 521
HgaI GACGC 2 cut(s) 257, 690
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 102, 548, 694, 761, 947
HinfI GANTC 6 cut(s) 65, 83, 136, 323, 482, 695
HpaII CCGG 3 cut(s) 140, 491, 521
Hpy166II GTNNAC 2 cut(s) 106, 751
Hpy188I TCNGA 4 cut(s) 337, 424, 894, 1007
Hpy188III TCNNGA 4 cut(s) 62, 140, 408, 758
Hpy8I GTNNAC 2 cut(s) 106, 751
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 22, 466, 736
HpyCH4III ACNGT 3 cut(s) 122, 755, 961
HpyCH4V TGCA 6 cut(s) 206, 314, 776, 925, 992, 1001
HpyF10VI GCNNNNNNNGC 5 cut(s) 218, 227, 569, 947, 998
HpyF3I CTNAG 4 cut(s) 336, 441, 792, 912
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 102, 548, 694, 761, 947
Kpn2I TCCGGA 1 cut(s) 139
Kzo9I GATC 4 cut(s) 16, 31, 157, 908
LmnI GCTCC 1 cut(s) 884
Lsp1109I GCAGC 2 cut(s) 556, 760
LweI GCATC 1 cut(s) 802
MaeI CTAG 3 cut(s) 231, 392, 564
MaeIII GTNAC 2 cut(s) 383, 780
MalI GATC 4 cut(s) 18, 33, 159, 910
MbiI CCGCTC 1 cut(s) 212
MboI GATC 4 cut(s) 16, 31, 157, 908
MboII GAAGA 8 cut(s) 257, 437, 601, 615, 618, 773, 780, 956
MflI RGATCY 2 cut(s) 31, 157
MluCI AATT 3 cut(s) 269, 807, 866
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 7 cut(s) 136, 227, 280, 331, 517, 526, 549
Mph1103I ATGCAT 1 cut(s) 316
MroI TCCGGA 1 cut(s) 139
MroXI GAANNNNTTC 1 cut(s) 346
MseI TTAA 1 cut(s) 798
MspI CCGG 3 cut(s) 140, 491, 521
MspR9I CCNGG 1 cut(s) 521
Mva1269I GAATGC 1 cut(s) 992
MwoI GCNNNNNNNGC 5 cut(s) 218, 227, 569, 947, 998
NciI CCSGG 1 cut(s) 521
NcoI CCATGG 1 cut(s) 690
NdeII GATC 4 cut(s) 16, 31, 157, 908
NlaIII CATG 5 cut(s) 102, 548, 694, 761, 947
NlaIV GGNNCC 2 cut(s) 33, 263
NmeAIII GCCGAG 3 cut(s) 23, 76, 129
NmuCI GTSAC 1 cut(s) 383
NsiI ATGCAT 1 cut(s) 316
PagI TCATGA 1 cut(s) 757
PctI GAATGC 1 cut(s) 992
PdmI GAANNNNTTC 1 cut(s) 346
PfeI GAWTC 6 cut(s) 65, 83, 136, 323, 482, 695
PflMI CCANNNNNTGG 1 cut(s) 132
PfoI TCCNGGA 1 cut(s) 519
PkrI GCNGC 3 cut(s) 49, 571, 775
PspN4I GGNNCC 2 cut(s) 33, 263
PspPI GGNCC 3 cut(s) 236, 289, 751
PsuI RGATCY 2 cut(s) 31, 157
RsaI GTAC 1 cut(s) 917
RsaNI GTAC 1 cut(s) 916
SaqAI TTAA 1 cut(s) 798
SatI GCNGC 3 cut(s) 48, 570, 774
Sau3AI GATC 4 cut(s) 16, 31, 157, 908
Sau96I GGNCC 3 cut(s) 236, 289, 751
ScaI AGTACT 1 cut(s) 917
ScrFI CCNGG 1 cut(s) 521
SetI ASST 8 cut(s) 358, 397, 465, 565, 652, 889, 903, 952
SfaNI GCATC 1 cut(s) 802
SinI GGWCC 2 cut(s) 289, 751
Sse9I AATT 3 cut(s) 269, 807, 866
SsiI CCGC 6 cut(s) 48, 163, 212, 364, 513, 596
SspMI CTAG 3 cut(s) 231, 392, 564
StyD4I CCNGG 1 cut(s) 519
StyI CCWWGG 2 cut(s) 356, 690
TaaI ACNGT 3 cut(s) 122, 755, 961
TaqI TCGA 1 cut(s) 8
TasI AATT 3 cut(s) 269, 807, 866
TatI WGTACW 1 cut(s) 915
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 6 cut(s) 65, 83, 136, 323, 482, 695
Tru1I TTAA 1 cut(s) 798
Tru9I TTAA 1 cut(s) 798
TscAI CASTG 2 cut(s) 753, 772
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 2 cut(s) 569, 773
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 3 cut(s) 262, 774, 837
TspGWI ACGGA 1 cut(s) 986
TspRI CASTG 2 cut(s) 753, 772
Van91I CCANNNNNTGG 1 cut(s) 132
VpaK11BI GGWCC 2 cut(s) 289, 751
XapI RAATTY 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 346
XspI CTAG 3 cut(s) 231, 392, 564
ZrmI AGTACT 1 cut(s) 917
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.