pycom08g07180

Syntaxin 6, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0010278
Physical Location & Seq
Forward (+)
5778678 .. 5780582
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g07180.1

Sequence Viewer

Length: 1035 bp
ATGGCGTCAAGTTTTGATCGATGGGAGAACGATCCATTTTTTCCGGCGGCCGAAGAAGTTCAAGAATCCGCGGACAGGATGGAATCTACATATCGAACATGGATCCACGCCAGGAAAGACGCTTCCATTATGTGGGATTCCGAGGAACTTCGCAGGGATCTTTGTACAACTCTTGGAACTACCAAATGGCAGTTAGAGGAGTTTACACGAGCAGTCAGGTCCAGTTATGCAAGAAGCTCATGTGAAGACGCAAGAGAGAGGCACCGTGCATTCATTGTTGCCATCGAGGAGCAGGTTTCCAAAATTGAAAAATCGTTAAAGGAAGCTGCCCTTTCTGAGGGCAAGGCTTCTCAGCCTTGGGTGCGTTTGGATGAAGGGGAGTGCAACGAACTTGCATTTTTTCTTTCTGGACCATCTGCTTCCGAAGAGACAGTTGTTGCCAAAAATAACGACAAGGATGTTGAAAAACCACGAGTCACAGATGGAGATACAGCGCCAGGTTGTTCGAAGAACTCATGTGGTTCGAACGAGTTGGGCTCCCAGAAGACTAGGGAGGAGAAGTCACATGGGCATAGGAGGACAGCTAGTGATAGTGCTGACATTGGTGCCTGGAAAATTGCTGTTTTTGACGATGGATACGTACCAAGTTCTTCTGCTATGATGGTTGAGCATCCTGTACGAAAGATTCCTAGTATGTCTGGGTTTCTTAGTTCCATGGAAACCGCGTCAAAGTTGAAGTGGTCAAAGAATGGTTTTAGAAAGTGGAAGGCAGTCGACCGTTATGAAGACGCTGATACTGCATTGTTGCCACCTACTCAGTTGACTAGGGGCATCAATGCTTGCTTGGAAAAAAATAAGAGTTGTTTGGATAGTTGCGATGAATGTTACGATAAACCATTGTATGGCTGGTACGGAGCTATCCAGAGACAACTTCAACGGTCTCAGTACTATATGCAATATAGTTGGCCTGCACGCGTAGCACTTTGGATCGGTGTACTCCTTTTCTTGATTGTCTTTGCGTTGCGTGCGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Syntaxin-6_N

Protein Analysis

345

Amino Acids

38.98

Weight (kDa)

5.74

Isoelectric Point (pI)

54.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STX6_10_61_N PF09177 11 - 103 4.4e-20 Syntaxin 6/10/61, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 283
AccB1I GGYRCC 2 cut(s) 261, 605
AccB7I CCANNNNNTGG 2 cut(s) 132, 902
AccI GTMKAC 1 cut(s) 774
AccII CGCG 3 cut(s) 71, 725, 975
AciI CCGC 4 cut(s) 47, 69, 71, 723
AclWI GGATC 5 cut(s) 26, 97, 110, 165, 995
AcoI YGGCCR 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 6 cut(s) 166, 642, 678, 911, 947, 996
AfiI CCNNNNNNNGG 4 cut(s) 75, 132, 337, 902
AflIII ACRYGT 1 cut(s) 973
AgsI TTSAA 5 cut(s) 62, 308, 464, 736, 935
AjnI CCWGG 3 cut(s) 110, 496, 608
AluBI AGCT 4 cut(s) 237, 326, 584, 917
AluI AGCT 4 cut(s) 237, 326, 584, 917
Alw26I GTCTC 3 cut(s) 422, 919, 945
AlwI GGATC 5 cut(s) 26, 97, 110, 165, 995
AoxI GGCC 2 cut(s) 48, 965
ApeKI GCWGC 1 cut(s) 326
Asp700I GAANNNNTTC 1 cut(s) 57
AspLEI GCGC 1 cut(s) 496
AspS9I GGNCC 2 cut(s) 219, 410
AsuII TTCGAA 2 cut(s) 506, 524
AvaII GGWCC 2 cut(s) 219, 410
BamHI GGATCC 1 cut(s) 102
BanI GGYRCC 2 cut(s) 261, 605
BanII GRGCYC 1 cut(s) 539
BauI CACGAG 2 cut(s) 207, 471
BbsI GAAGAC 3 cut(s) 252, 551, 792
BbvI GCAGC 1 cut(s) 313
BccI CCATC 7 cut(s) 15, 73, 290, 421, 476, 626, 655
BciT130I CCWGG 3 cut(s) 112, 498, 610
BciVI GTATCC 1 cut(s) 629
BcoDI GTCTC 3 cut(s) 422, 919, 945
BfaI CTAG 4 cut(s) 549, 585, 690, 825
BfoI RGCGCY 1 cut(s) 497
BfuAI ACCTGC 1 cut(s) 283
BfuI GTATCC 1 cut(s) 629
BisI GCNGC 2 cut(s) 48, 327
BlsI GCNGC 2 cut(s) 49, 328
BmcAI AGTACT 1 cut(s) 947
Bme1390I CCNGG 3 cut(s) 112, 498, 610
Bme18I GGWCC 2 cut(s) 219, 410
BmgT120I GGNCC 2 cut(s) 219, 410
BmiI GGNNCC 4 cut(s) 104, 263, 538, 607
BmrFI CCNGG 3 cut(s) 112, 498, 610
BmsI GCATC 2 cut(s) 679, 840
BpiI GAAGAC 3 cut(s) 252, 551, 792
BplI GAGNNNNNCTC 2 cut(s) 521, 553
Bpu14I TTCGAA 2 cut(s) 506, 524
Bsa29I ATCGAT 1 cut(s) 19
BsaAI YACGTR 1 cut(s) 640
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 945
BsaJI CCNNGG 4 cut(s) 69, 141, 356, 714
BsaXI ACNNNNNCTCC 2 cut(s) 545, 575
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 132, 337, 902
Bse1I ACTGG 1 cut(s) 222
BseBI CCWGG 3 cut(s) 112, 498, 610
BseCI ATCGAT 1 cut(s) 19
BseDI CCNNGG 4 cut(s) 69, 141, 356, 714
BseGI GGATG 4 cut(s) 84, 376, 463, 670
BseLI CCNNNNNNNGG 4 cut(s) 75, 132, 337, 902
BseMII CTCAG 4 cut(s) 327, 365, 830, 956
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 3 cut(s) 212, 302, 569
BseX3I CGGCCG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 313
BsgI GTGCAG 1 cut(s) 954
Bsh1236I CGCG 3 cut(s) 71, 725, 975
Bsh1285I CGRYCG 2 cut(s) 51, 778
BshFI GGCC 2 cut(s) 50, 967
BshNI GGYRCC 2 cut(s) 261, 605
BshVI ATCGAT 1 cut(s) 19
BsiEI CGRYCG 2 cut(s) 51, 778
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 4 cut(s) 75, 132, 337, 902
BsmAI GTCTC 3 cut(s) 422, 919, 945
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 2 cut(s) 50, 967
Bso31I GGTCTC 1 cut(s) 945
Bsp119I TTCGAA 2 cut(s) 506, 524
Bsp1286I GDGCHC 1 cut(s) 539
Bsp1407I TGTACA 1 cut(s) 164
Bsp143I GATC 6 cut(s) 16, 31, 102, 157, 987, 1029
Bsp19I CCATGG 1 cut(s) 714
BspACI CCGC 4 cut(s) 47, 69, 71, 723
BspANI GGCC 2 cut(s) 50, 967
BspCNI CTCAG 4 cut(s) 328, 364, 829, 955
BspDI ATCGAT 1 cut(s) 19
BspFNI CGCG 3 cut(s) 71, 725, 975
BspLI GGNNCC 4 cut(s) 104, 263, 538, 607
BspMI ACCTGC 1 cut(s) 283
BspPI GGATC 5 cut(s) 26, 97, 110, 165, 995
BspT104I TTCGAA 2 cut(s) 506, 524
BspT107I GGYRCC 2 cut(s) 261, 605
BspTNI GGTCTC 1 cut(s) 945
BsrGI TGTACA 1 cut(s) 164
BsrI ACTGG 1 cut(s) 222
BssECI CCNNGG 4 cut(s) 69, 141, 356, 714
BssMI GATC 6 cut(s) 16, 31, 102, 157, 987, 1029
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 2 cut(s) 207, 471
BssT1I CCWWGG 2 cut(s) 356, 714
Bst2BI CACGAG 2 cut(s) 207, 471
Bst2UI CCWGG 3 cut(s) 112, 498, 610
Bst4CI ACNGT 4 cut(s) 266, 433, 779, 939
Bst6I CTCTTC 1 cut(s) 420
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 164
BstBAI YACGTR 1 cut(s) 640
BstBI TTCGAA 2 cut(s) 506, 524
BstC8I GCNNGC 4 cut(s) 841, 969, 973, 1026
BstDEI CTNAG 5 cut(s) 336, 351, 707, 816, 942
BstDSI CCRYGG 2 cut(s) 69, 714
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 4 cut(s) 84, 376, 463, 670
BstFNI CGCG 3 cut(s) 71, 725, 975
BstH2I RGCGCY 1 cut(s) 497
BstHHI GCGC 1 cut(s) 496
BstKTI GATC 6 cut(s) 19, 34, 105, 160, 990, 1032
BstMAI GTCTC 3 cut(s) 422, 919, 945
BstMBI GATC 6 cut(s) 16, 31, 102, 157, 987, 1029
BstMCI CGRYCG 2 cut(s) 51, 778
BstMWI GCNNNNNNNGC 4 cut(s) 361, 797, 977, 1025
BstNI CCWGG 3 cut(s) 112, 498, 610
BstSCI CCNGG 3 cut(s) 110, 496, 608
BstSNI TACGTA 1 cut(s) 640
BstUI CGCG 3 cut(s) 71, 725, 975
BstV1I GCAGC 1 cut(s) 313
BstV2I GAAGAC 3 cut(s) 252, 551, 792
BstX2I RGATCY 2 cut(s) 102, 157
BstYI RGATCY 2 cut(s) 102, 157
BstZI CGGCCG 1 cut(s) 48
Bsu15I ATCGAT 1 cut(s) 19
BsuI GTATCC 1 cut(s) 629
BsuRI GGCC 2 cut(s) 50, 967
BsuTUI ATCGAT 1 cut(s) 19
BtgI CCRYGG 2 cut(s) 69, 714
BtgZI GCGATG 1 cut(s) 891
BtsCI GGATG 4 cut(s) 84, 376, 463, 670
BveI ACCTGC 1 cut(s) 283
Cac8I GCNNGC 4 cut(s) 841, 969, 973, 1026
CfoI GCGC 1 cut(s) 496
Cfr13I GGNCC 2 cut(s) 219, 410
Cfr42I CCGCGG 1 cut(s) 72
ClaI ATCGAT 1 cut(s) 19
CseI GACGC 4 cut(s) 128, 257, 714, 797
Csp6I GTAC 6 cut(s) 165, 641, 677, 910, 946, 995
CviAII CATG 5 cut(s) 99, 240, 516, 566, 715
CviQI GTAC 6 cut(s) 165, 641, 677, 910, 946, 995
DdeI CTNAG 5 cut(s) 336, 351, 707, 816, 942
DpnI GATC 6 cut(s) 18, 33, 104, 159, 989, 1031
DpnII GATC 6 cut(s) 16, 31, 102, 157, 987, 1029
EaeI YGGCCR 1 cut(s) 48
EagI CGGCCG 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 420
EclXI CGGCCG 1 cut(s) 48
Eco105I TACGTA 1 cut(s) 640
Eco130I CCWWGG 2 cut(s) 356, 714
Eco24I GRGCYC 1 cut(s) 539
Eco31I GGTCTC 1 cut(s) 945
Eco47I GGWCC 2 cut(s) 219, 410
Eco52I CGGCCG 1 cut(s) 48
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoRII CCWGG 3 cut(s) 110, 496, 608
EcoT14I CCWWGG 2 cut(s) 356, 714
EcoT38I GRGCYC 1 cut(s) 539
ErhI CCWWGG 2 cut(s) 356, 714
FaeI CATG 5 cut(s) 102, 243, 519, 569, 718
FalI AAGNNNNNCTT 2 cut(s) 315, 347
FatI CATG 5 cut(s) 98, 239, 515, 565, 714
FblI GTMKAC 1 cut(s) 774
Fnu4HI GCNGC 2 cut(s) 48, 327
FokI GGATG 4 cut(s) 91, 383, 470, 657
FriOI GRGCYC 1 cut(s) 539
Fsp4HI GCNGC 2 cut(s) 48, 327
FspBI CTAG 4 cut(s) 549, 585, 690, 825
GlaI GCGC 1 cut(s) 495
GluI GCNGC 2 cut(s) 48, 327
HaeII RGCGCY 1 cut(s) 497
HaeIII GGCC 2 cut(s) 50, 967
HapII CCGG 1 cut(s) 44
HgaI GACGC 4 cut(s) 128, 257, 714, 797
HhaI GCGC 1 cut(s) 496
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 102, 243, 519, 569, 718
Hin6I GCGC 1 cut(s) 494
HinP1I GCGC 1 cut(s) 494
HincII GTYRAC 2 cut(s) 775, 822
HindII GTYRAC 2 cut(s) 775, 822
HinfI GANTC 5 cut(s) 65, 83, 137, 474, 685
HpaII CCGG 1 cut(s) 44
Hpy166II GTNNAC 4 cut(s) 204, 775, 822, 995
Hpy188I TCNGA 4 cut(s) 142, 337, 424, 1034
Hpy188III TCNNGA 4 cut(s) 62, 408, 922, 1006
Hpy8I GTNNAC 4 cut(s) 204, 775, 822, 995
HpyAV CCTTC 2 cut(s) 368, 760
HpyCH4III ACNGT 4 cut(s) 266, 433, 779, 939
HpyCH4IV ACGT 1 cut(s) 639
HpyCH4V TGCA 7 cut(s) 230, 269, 384, 395, 800, 955, 971
HpyF10VI GCNNNNNNNGC 4 cut(s) 361, 797, 977, 1025
HpyF3I CTNAG 5 cut(s) 336, 351, 707, 816, 942
HpySE526I ACGT 1 cut(s) 639
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 102, 243, 519, 569, 718
HspAI GCGC 1 cut(s) 494
KspI CCGCGG 1 cut(s) 72
Kzo9I GATC 6 cut(s) 16, 31, 102, 157, 987, 1029
LmnI GCTCC 3 cut(s) 289, 542, 914
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 2 cut(s) 679, 840
MaeI CTAG 4 cut(s) 549, 585, 690, 825
MaeII ACGT 1 cut(s) 639
MaeIII GTNAC 3 cut(s) 475, 561, 884
MalI GATC 6 cut(s) 18, 33, 104, 159, 989, 1031
MboI GATC 6 cut(s) 16, 31, 102, 157, 987, 1029
MboII GAAGA 7 cut(s) 65, 257, 437, 520, 556, 642, 797
MflI RGATCY 2 cut(s) 102, 157
MhlI GDGCHC 1 cut(s) 539
MluCI AATT 2 cut(s) 303, 615
MluI ACGCGT 1 cut(s) 973
MlyI GAGTC 1 cut(s) 483
MnlI CCTC 7 cut(s) 136, 190, 252, 280, 331, 547, 570
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 1 cut(s) 317
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 3 cut(s) 112, 498, 610
Mva1269I GAATGC 1 cut(s) 269
MvaI CCWGG 3 cut(s) 112, 498, 610
MvnI CGCG 3 cut(s) 71, 725, 975
MwoI GCNNNNNNNGC 4 cut(s) 361, 797, 977, 1025
NcoI CCATGG 1 cut(s) 714
NdeII GATC 6 cut(s) 16, 31, 102, 157, 987, 1029
NlaIII CATG 5 cut(s) 102, 243, 519, 569, 718
NlaIV GGNNCC 4 cut(s) 104, 263, 538, 607
NmuCI GTSAC 2 cut(s) 475, 561
NspV TTCGAA 2 cut(s) 506, 524
PcsI WCGNNNNNNNCGW 1 cut(s) 636
PctI GAATGC 1 cut(s) 269
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 4 cut(s) 65, 83, 137, 685
PflMI CCANNNNNTGG 2 cut(s) 132, 902
PkrI GCNGC 2 cut(s) 49, 328
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
Ppu21I YACGTR 1 cut(s) 640
Psp6I CCWGG 3 cut(s) 110, 496, 608
PspGI CCWGG 3 cut(s) 110, 496, 608
PspN4I GGNNCC 4 cut(s) 104, 263, 538, 607
PspPI GGNCC 2 cut(s) 219, 410
PsuI RGATCY 2 cut(s) 102, 157
RsaI GTAC 6 cut(s) 166, 642, 678, 911, 947, 996
RsaNI GTAC 6 cut(s) 165, 641, 677, 910, 946, 995
SacII CCGCGG 1 cut(s) 72
SalI GTCGAC 1 cut(s) 773
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 2 cut(s) 48, 327
Sau3AI GATC 6 cut(s) 16, 31, 102, 157, 987, 1029
Sau96I GGNCC 2 cut(s) 219, 410
ScaI AGTACT 1 cut(s) 947
SchI GAGTC 1 cut(s) 483
ScrFI CCNGG 3 cut(s) 112, 498, 610
SduI GDGCHC 1 cut(s) 539
SetI ASST 9 cut(s) 221, 239, 297, 328, 502, 586, 642, 814, 919
SfaNI GCATC 2 cut(s) 679, 840
Sfr303I CCGCGG 1 cut(s) 72
SfuI TTCGAA 2 cut(s) 506, 524
SgrBI CCGCGG 1 cut(s) 72
SinI GGWCC 2 cut(s) 219, 410
SnaBI TACGTA 1 cut(s) 640
Sse9I AATT 2 cut(s) 303, 615
SsiI CCGC 4 cut(s) 47, 69, 71, 723
SspMI CTAG 4 cut(s) 549, 585, 690, 825
StyD4I CCNGG 3 cut(s) 110, 496, 608
StyI CCWWGG 2 cut(s) 356, 714
TaaI ACNGT 4 cut(s) 266, 433, 779, 939
TaiI ACGT 1 cut(s) 642
TaqI TCGA 6 cut(s) 19, 94, 285, 506, 524, 774
TasI AATT 2 cut(s) 303, 615
TatI WGTACW 3 cut(s) 164, 945, 994
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 4 cut(s) 65, 83, 137, 685
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TseFI GTSAC 2 cut(s) 475, 561
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 2 cut(s) 475, 561
TspDTI ATGAA 4 cut(s) 262, 387, 798, 894
TspGWI ACGGA 1 cut(s) 927
Van91I CCANNNNNTGG 2 cut(s) 132, 902
VpaK11BI GGWCC 2 cut(s) 219, 410
XagI CCTNNNNNAGG 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 903
XmiI GTMKAC 1 cut(s) 774
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 4 cut(s) 549, 585, 690, 825
ZrmI AGTACT 1 cut(s) 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.