Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0010278

Physical Location & Seq

Genomic Coordinates Forward (+)

36641254 .. 36643690

Gene Structure 2437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G425900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCGTCAAGTTTTGATCGGTGGGAGAAAGATCCATTTTTCTCAGCGGCCGAAGAAGTTCAAGAATCCGCAGACAGGATGGAATCTACATATAGAACATGGATTCATGCCAAGAAAGACACTTCCAGTATGTGGGATCCCGAGGAACTTCACAGGGATCTCCGTACAACCCTTGGAACTACCAAATGGCAGTTAGAGGAGTTTGCGCGAGCCGTCAGGTCAAGTTATGCTAGAAGCTCATGTGAAGATGCAAGAGACAGGCACCATGAATTCATTGTTGCCATTGAGGACCAGATTTCCAAAATTGAAATCTCATTACAGGAAGTTGCCCTTTCTGAAGGCAAGGCTTCTCAGCCTTGGGTGCGTTTGGATGAAGGGGAGTGCAATGAGCTTGCATTTTTTCTTTCCGGACCATCTGCATCTAAAGAGAGAGTTATTGCTTTGAGTAATGACAGGGATAGTGAAAACCTACGAGTGACAGATAAAGAATCGGCACCAGGCTGTTCGAAGAATTCATGTGGTTCAGCCGAGTGGGGTTCCCAGAAGACTAGGGAGGAGAAGCCACATGGGCATAGGAGGACAGCTAGTGCTAGTGCTGACATTGGTGTTTGGAAGATTGCAGTTTTTGATGATGCATTCTTACCAAGTTCTTCTGCGATGATGGTTGAGCAACCTGTACGAAAGATTCCCAGTTTCTCTGGGTTTATTAGTTCCATGGAAACCGCATCAAAGTTGAAGTGGTCAAAGAATGGTTTTAGGAAGTGGAAGGCAGTGGACCGTCATGAAGATGCTGATGCTGCATTGTTGCCATCTTCTCAGTTGTCTGGGGGCATCAATGCTTGTTATGAAAAAAGTAAGAGTTGTTTGGATAGTTGCGACGACTGTTATGATAAACCATTGTATGGCTGGTACGGAGCTATTCAGAGACAACTTCAAAGGTCTCAGTACTACGTGCAATATAGTTGGCCTGCTCGTGTAGCTTTTTGGATTGCTCTTGTTTGCTTGATTGTTTTAATTGCATTGCGTGCTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Syntaxin-6_N

Protein Analysis

345

Amino Acids

38.93

Weight (kDa)

5.77

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27700
fragaria_vesca	FvH4_2g33360 FvH4_2g33360 FvH4_2g33360
malus_domestica	MD08G1088200.v1.1 MD15G1073000.v1.1
prunus_persica	Prupe.1G425900_v2.0.a1
pyrus_communis	pycom08g07180 pycom15g06820
rosa_chinensis	RchiOBHm_Chr6g0309221
rosa_laevigata	RLG00000010581
rosa_multiflora	Rmu_sc0007078.1_g000001 Rmu_sc0016971.1_g000005 Rmu_sc0020102.1_g000010
rosa_roxburghii	Rroxscaffold_7G00159550
rosa_rugosa	Rorug06G0370400
rosa_samantha	Rh6AG483600 Rh6BG492700 Rh6CG497600 Rh6DG484200
rosa_wichuraiana	Rw6G042110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	261, 493
AccB7I	CCANNNNNTGG	2 cut(s)	132, 902
AccII	CGCG	1 cut(s)	208
AccIII	TCCGGA	1 cut(s)	407
AciI	CCGC	3 cut(s)	47, 69, 723
AclWI	GGATC	4 cut(s)	26, 131, 144, 165
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	2 cut(s)	269, 511
AcuI	CTGAAG	1 cut(s)	357
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	166, 678, 911, 947
AfiI	CCNNNNNNNGG	3 cut(s)	75, 132, 902
AgsI	TTSAA	4 cut(s)	62, 308, 736, 935
AjnI	CCWGG	1 cut(s)	496
AluBI	AGCT	5 cut(s)	237, 391, 584, 917, 980
AluI	AGCT	5 cut(s)	237, 391, 584, 917, 980
Alw26I	GTCTC	3 cut(s)	249, 919, 945
AlwI	GGATC	4 cut(s)	26, 131, 144, 165
Ama87I	CYCGRG	1 cut(s)	140
Aor13HI	TCCGGA	1 cut(s)	407
AoxI	GGCC	2 cut(s)	48, 965
ApeKI	GCWGC	1 cut(s)	797
ApoI	RAATTY	2 cut(s)	269, 511
Asp700I	GAANNNNTTC	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	3 cut(s)	289, 410, 775
AsuII	TTCGAA	1 cut(s)	506
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	3 cut(s)	289, 410, 775
BamHI	GGATCC	1 cut(s)	136
BanI	GGYRCC	2 cut(s)	261, 493
BauI	CACGAG	1 cut(s)	972
BbsI	GAAGAC	1 cut(s)	551
BbvI	GCAGC	1 cut(s)	784
BccI	CCATC	4 cut(s)	73, 421, 655, 817
BceAI	ACGGC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	498
BcoDI	GTCTC	3 cut(s)	249, 919, 945
BfaI	CTAG	4 cut(s)	231, 549, 585, 591
BglI	GCCNNNNNGGC	1 cut(s)	568
BisI	GCNGC	2 cut(s)	48, 798
BlsI	GCNGC	2 cut(s)	49, 799
BmcAI	AGTACT	1 cut(s)	947
Bme1390I	CCNGG	1 cut(s)	498
Bme18I	GGWCC	3 cut(s)	289, 410, 775
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	3 cut(s)	289, 410, 775
BmiI	GGNNCC	4 cut(s)	138, 263, 495, 538
BmrFI	CCNGG	1 cut(s)	498
BmrI	ACTGGG	1 cut(s)	684
BmsI	GCATC	7 cut(s)	238, 428, 622, 734, 778, 784, 840
BmuI	ACTGGG	1 cut(s)	684
BpiI	GAAGAC	1 cut(s)	551
Bpu14I	TTCGAA	1 cut(s)	506
BsaAI	YACGTR	1 cut(s)	952
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	945
BsaJI	CCNNGG	4 cut(s)	141, 172, 356, 714
BsaWI	WCCGGW	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 132, 902
Bse1I	ACTGG	2 cut(s)	126, 690
Bse3DI	GCAATG	2 cut(s)	391, 1019
BseAI	TCCGGA	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	4 cut(s)	141, 172, 356, 714
BseGI	GGATG	2 cut(s)	84, 376
BseLI	CCNNNNNNNGG	3 cut(s)	75, 132, 902
BseMI	GCAATG	2 cut(s)	391, 1019
BseMII	CTCAG	4 cut(s)	57, 365, 830, 956
BseNI	ACTGG	2 cut(s)	126, 690
BseRI	GAGGAG	2 cut(s)	212, 569
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	784
Bsh1236I	CGCG	1 cut(s)	208
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	50, 967
BshNI	GGYRCC	2 cut(s)	261, 493
BsiEI	CGRYCG	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	408
BslI	CCNNNNNNNGG	3 cut(s)	75, 132, 902
BsmAI	GTCTC	3 cut(s)	249, 919, 945
BsmI	GAATGC	1 cut(s)	635
BsnI	GGCC	2 cut(s)	50, 967
Bso31I	GGTCTC	1 cut(s)	945
BsoBI	CYCGRG	1 cut(s)	140
Bsp119I	TTCGAA	1 cut(s)	506
Bsp13I	TCCGGA	1 cut(s)	407
Bsp143I	GATC	4 cut(s)	16, 31, 136, 157
Bsp19I	CCATGG	1 cut(s)	714
BspACI	CCGC	3 cut(s)	47, 69, 723
BspANI	GGCC	2 cut(s)	50, 967
BspCNI	CTCAG	4 cut(s)	56, 364, 829, 955
BspEI	TCCGGA	1 cut(s)	407
BspFNI	CGCG	1 cut(s)	208
BspHI	TCATGA	1 cut(s)	781
BspLI	GGNNCC	4 cut(s)	138, 263, 495, 538
BspPI	GGATC	4 cut(s)	26, 131, 144, 165
BspT104I	TTCGAA	1 cut(s)	506
BspT107I	GGYRCC	2 cut(s)	261, 493
BspTNI	GGTCTC	1 cut(s)	945
BsrDI	GCAATG	2 cut(s)	391, 1019
BsrI	ACTGG	2 cut(s)	126, 690
BssECI	CCNNGG	4 cut(s)	141, 172, 356, 714
BssMI	GATC	4 cut(s)	16, 31, 136, 157
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	972
BssT1I	CCWWGG	3 cut(s)	172, 356, 714
Bst2BI	CACGAG	1 cut(s)	972
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	2 cut(s)	779, 884
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	1025
BstBAI	YACGTR	1 cut(s)	952
BstBI	TTCGAA	1 cut(s)	506
BstC8I	GCNNGC	4 cut(s)	210, 393, 969, 1026
BstDEI	CTNAG	4 cut(s)	43, 351, 816, 942
BstDSI	CCRYGG	1 cut(s)	714
BstF5I	GGATG	2 cut(s)	84, 376
BstFNI	CGCG	1 cut(s)	208
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	4 cut(s)	19, 34, 139, 160
BstMAI	GTCTC	3 cut(s)	249, 919, 945
BstMBI	GATC	4 cut(s)	16, 31, 136, 157
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	5 cut(s)	361, 568, 797, 977, 1025
BstNI	CCWGG	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	496
BstUI	CGCG	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	784
BstV2I	GAAGAC	1 cut(s)	551
BstX2I	RGATCY	3 cut(s)	31, 136, 157
BstYI	RGATCY	3 cut(s)	31, 136, 157
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	50, 967
BtgI	CCRYGG	1 cut(s)	714
BtgZI	GCGATG	1 cut(s)	671
BtsCI	GGATG	2 cut(s)	84, 376
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	1 cut(s)	777
Cac8I	GCNNGC	4 cut(s)	210, 393, 969, 1026
CciI	TCATGA	1 cut(s)	781
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	3 cut(s)	289, 410, 775
Csp6I	GTAC	4 cut(s)	165, 677, 910, 946
CviAII	CATG	8 cut(s)	99, 107, 240, 266, 516, 566, 715, 782
CviQI	GTAC	4 cut(s)	165, 677, 910, 946
DdeI	CTNAG	4 cut(s)	43, 351, 816, 942
DpnI	GATC	4 cut(s)	18, 33, 138, 159
DpnII	GATC	4 cut(s)	16, 31, 136, 157
EaeI	YGGCCR	1 cut(s)	48
EagI	CGGCCG	1 cut(s)	48
EclXI	CGGCCG	1 cut(s)	48
Eco130I	CCWWGG	3 cut(s)	172, 356, 714
Eco31I	GGTCTC	1 cut(s)	945
Eco47I	GGWCC	3 cut(s)	289, 410, 775
Eco52I	CGGCCG	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	140
EcoRI	GAATTC	2 cut(s)	269, 511
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	3 cut(s)	172, 356, 714
EcoT22I	ATGCAT	1 cut(s)	637
ErhI	CCWWGG	3 cut(s)	172, 356, 714
FaeI	CATG	8 cut(s)	102, 110, 243, 269, 519, 569, 718, 785
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FatI	CATG	8 cut(s)	98, 106, 239, 265, 515, 565, 714, 781
Fnu4HI	GCNGC	2 cut(s)	48, 798
FokI	GGATG	2 cut(s)	91, 383
Fsp4HI	GCNGC	2 cut(s)	48, 798
FspBI	CTAG	4 cut(s)	231, 549, 585, 591
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	2 cut(s)	48, 798
HaeIII	GGCC	2 cut(s)	50, 967
HapII	CCGG	1 cut(s)	408
HhaI	GCGC	1 cut(s)	208
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	8 cut(s)	102, 110, 243, 269, 519, 569, 718, 785
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HinfI	GANTC	5 cut(s)	65, 83, 103, 488, 685
HpaII	CCGG	1 cut(s)	408
Hpy166II	GTNNAC	1 cut(s)	775
Hpy188I	TCNGA	3 cut(s)	337, 924, 1034
Hpy188III	TCNNGA	4 cut(s)	62, 140, 408, 782
Hpy8I	GTNNAC	1 cut(s)	775
Hpy99I	CGWCG	1 cut(s)	881
HpyAV	CCTTC	3 cut(s)	332, 368, 760
HpyCH4III	ACNGT	2 cut(s)	779, 884
HpyCH4IV	ACGT	1 cut(s)	951
HpyCH4V	TGCA	9 cut(s)	251, 384, 395, 419, 620, 635, 800, 955, 1019
HpyF10VI	GCNNNNNNNGC	5 cut(s)	361, 568, 797, 977, 1025
HpyF3I	CTNAG	4 cut(s)	43, 351, 816, 942
HpySE526I	ACGT	1 cut(s)	951
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	8 cut(s)	102, 110, 243, 269, 519, 569, 718, 785
HspAI	GCGC	1 cut(s)	206
Kpn2I	TCCGGA	1 cut(s)	407
Kzo9I	GATC	4 cut(s)	16, 31, 136, 157
LmnI	GCTCC	1 cut(s)	914
Lsp1109I	GCAGC	1 cut(s)	784
LweI	GCATC	7 cut(s)	238, 428, 622, 734, 778, 784, 840
MaeI	CTAG	4 cut(s)	231, 549, 585, 591
MaeII	ACGT	1 cut(s)	951
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	4 cut(s)	18, 33, 138, 159
MboI	GATC	4 cut(s)	16, 31, 136, 157
MboII	GAAGA	8 cut(s)	65, 257, 520, 556, 625, 642, 797, 804
MflI	RGATCY	3 cut(s)	31, 136, 157
MluCI	AATT	4 cut(s)	269, 303, 511, 1014
MnlI	CCTC	5 cut(s)	136, 190, 280, 547, 570
Mph1103I	ATGCAT	1 cut(s)	637
MroI	TCCGGA	1 cut(s)	407
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	1 cut(s)	1013
MslI	CAYNNNNRTG	1 cut(s)	786
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	1 cut(s)	498
Mva1269I	GAATGC	1 cut(s)	635
MvaI	CCWGG	1 cut(s)	498
MvnI	CGCG	1 cut(s)	208
MwoI	GCNNNNNNNGC	5 cut(s)	361, 568, 797, 977, 1025
NcoI	CCATGG	1 cut(s)	714
NdeII	GATC	4 cut(s)	16, 31, 136, 157
NlaIII	CATG	8 cut(s)	102, 110, 243, 269, 519, 569, 718, 785
NlaIV	GGNNCC	4 cut(s)	138, 263, 495, 538
NmeAIII	GCCGAG	1 cut(s)	553
NmuCI	GTSAC	1 cut(s)	475
NsiI	ATGCAT	1 cut(s)	637
NspV	TTCGAA	1 cut(s)	506
PagI	TCATGA	1 cut(s)	781
PctI	GAATGC	1 cut(s)	635
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	5 cut(s)	65, 83, 103, 488, 685
PflMI	CCANNNNNTGG	2 cut(s)	132, 902
PkrI	GCNGC	2 cut(s)	49, 799
Ppu21I	YACGTR	1 cut(s)	952
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	4 cut(s)	138, 263, 495, 538
PspPI	GGNCC	3 cut(s)	289, 410, 775
PsuI	RGATCY	3 cut(s)	31, 136, 157
RsaI	GTAC	4 cut(s)	166, 678, 911, 947
RsaNI	GTAC	4 cut(s)	165, 677, 910, 946
RseI	CAYNNNNRTG	1 cut(s)	786
SaqAI	TTAA	1 cut(s)	1013
SatI	GCNGC	2 cut(s)	48, 798
Sau3AI	GATC	4 cut(s)	16, 31, 136, 157
Sau96I	GGNCC	3 cut(s)	289, 410, 775
ScaI	AGTACT	1 cut(s)	947
ScrFI	CCNGG	1 cut(s)	498
SfaNI	GCATC	7 cut(s)	238, 428, 622, 734, 778, 784, 840
SfuI	TTCGAA	1 cut(s)	506
SinI	GGWCC	3 cut(s)	289, 410, 775
SmiMI	CAYNNNNRTG	1 cut(s)	786
Sse9I	AATT	4 cut(s)	269, 303, 511, 1014
SsiI	CCGC	3 cut(s)	47, 69, 723
SspMI	CTAG	4 cut(s)	231, 549, 585, 591
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	3 cut(s)	172, 356, 714
TaaI	ACNGT	2 cut(s)	779, 884
TaiI	ACGT	1 cut(s)	954
TaqI	TCGA	1 cut(s)	506
TasI	AATT	4 cut(s)	269, 303, 511, 1014
TatI	WGTACW	1 cut(s)	945
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	5 cut(s)	65, 83, 103, 488, 685
Tru1I	TTAA	1 cut(s)	1013
Tru9I	TTAA	1 cut(s)	1013
TscAI	CASTG	1 cut(s)	777
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	1 cut(s)	797
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	7 cut(s)	95, 262, 282, 387, 504, 798, 861
TspGWI	ACGGA	2 cut(s)	152, 927
TspRI	CASTG	1 cut(s)	777
Van91I	CCANNNNNTGG	2 cut(s)	132, 902
VpaK11BI	GGWCC	3 cut(s)	289, 410, 775
XapI	RAATTY	2 cut(s)	269, 511
XcmI	CCANNNNNNNNNTGG	1 cut(s)	903
XmnI	GAANNNNTTC	1 cut(s)	57
XspI	CTAG	4 cut(s)	231, 549, 585, 591
ZrmI	AGTACT	1 cut(s)	947
Zsp2I	ATGCAT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.