Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007078.1

Orthogroup ID

OG0010278

Physical Location & Seq

Genomic Coordinates Reverse (-)

789 .. 2201

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007078.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atggaatctacatatagaacatggattcacgccaagaaagacagttccagtatgtggaatccggaggaactctgcagggatctccgcactactcttggaactaccaaatggcagttggatgagtttgcacgagcggtcagggcaagttatgctagaggcccaagtgaagacgcaagagacaggcaccgcgaattcattgttgctatggaggaccagatttctaaagttgaaattgcattacgggaatctgccttttctgagggcaagacttctctgccttgggtgcgtttggacgaaggagagtgtaacgaactagcttcttttctttctggactgactgcttctcaagagaaagttcttgctaagagtaaggatattgaaaacctacgagtgacggatagagaatcagcaccagattgttcaaagaactcatgcggttcagggggttcccgggaggctagggaggagaagttacatgggcataggaggacagctagtgctagtgctgatattggttcctggaagattgcggtctatgatgatggtcacttaccatcttcgtcttctatgatgattgaacaacctgtgcgaaagatacccagtttctctgggtttattagttccatggaatctgcatcaaagttgaagtggtcaaagaatggttttaggaagtggaaggcagtggaccgtcatgaagacactgatgctgcattgttaccatctactcagttgactaagggcattgatgcttgctatgaaagaagcaagagctgtttggatagtgattgctatgataaacaattatatggctggtatggagctatacagagacaacttcaacgatctcagtactatgtgcagtatagttggcctgctcatgtagctttttggattgttcttctcctttgcttgatttttttgattgcattccgtgcaatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Syntaxin-6_N

Protein Analysis

313

Amino Acids

35.55

Weight (kDa)

7.58

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27700
fragaria_vesca	FvH4_2g33360 FvH4_2g33360 FvH4_2g33360
malus_domestica	MD08G1088200.v1.1 MD15G1073000.v1.1
prunus_persica	Prupe.1G425900_v2.0.a1
pyrus_communis	pycom08g07180 pycom15g06820
rosa_chinensis	RchiOBHm_Chr6g0309221
rosa_laevigata	RLG00000010581
rosa_multiflora	Rmu_sc0007078.1_g000001 Rmu_sc0016971.1_g000005 Rmu_sc0020102.1_g000010
rosa_roxburghii	Rroxscaffold_7G00159550
rosa_rugosa	Rorug06G0370400
rosa_samantha	Rh6AG483600 Rh6BG492700 Rh6CG497600 Rh6DG484200
rosa_wichuraiana	Rw6G042110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	183
AccB7I	CCANNNNNTGG	1 cut(s)	54
AccBSI	CCGCTC	1 cut(s)	134
AccII	CGCG	1 cut(s)	189
AccIII	TCCGGA	1 cut(s)	61
AciI	CCGC	5 cut(s)	85, 134, 187, 435, 530
AclWI	GGATC	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	191
AfaI	GTAC	1 cut(s)	851
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgsI	TTSAA	6 cut(s)	230, 380, 423, 578, 646, 839
AjnI	CCWGG	1 cut(s)	518
AluBI	AGCT	5 cut(s)	317, 494, 771, 821, 884
AluI	AGCT	5 cut(s)	317, 494, 771, 821, 884
Alw26I	GTCTC	2 cut(s)	171, 823
AlwI	GGATC	1 cut(s)	87
Ama87I	CYCGRG	1 cut(s)	450
Aor13HI	TCCGGA	1 cut(s)	61
AoxI	GGCC	2 cut(s)	157, 869
ApeKI	GCWGC	1 cut(s)	707
ApoI	RAATTY	1 cut(s)	191
AspS9I	GGNCC	3 cut(s)	158, 211, 685
AsuC2I	CCSGG	2 cut(s)	451, 452
AvaI	CYCGRG	1 cut(s)	450
AvaII	GGWCC	2 cut(s)	211, 685
BanI	GGYRCC	1 cut(s)	183
BauI	CACGAG	1 cut(s)	129
BbsI	GAAGAC	3 cut(s)	174, 555, 702
BbvI	GCAGC	1 cut(s)	694
BccI	CCATC	3 cut(s)	536, 562, 727
BciT130I	CCWGG	1 cut(s)	520
BcnI	CCSGG	2 cut(s)	451, 452
BcoDI	GTCTC	2 cut(s)	171, 823
BfaI	CTAG	5 cut(s)	153, 314, 459, 495, 501
BfmI	CTRYAG	1 cut(s)	73
BisI	GCNGC	1 cut(s)	708
BlsI	GCNGC	1 cut(s)	709
BmcAI	AGTACT	1 cut(s)	851
Bme1390I	CCNGG	3 cut(s)	451, 452, 520
Bme18I	GGWCC	2 cut(s)	211, 685
BmeT110I	CYCGRG	1 cut(s)	450
BmgT120I	GGNCC	3 cut(s)	158, 211, 685
BmiI	GGNNCC	3 cut(s)	185, 448, 517
BmrFI	CCNGG	3 cut(s)	451, 452, 520
BmrI	ACTGGG	1 cut(s)	594
BmsI	GCATC	3 cut(s)	644, 694, 736
BmuI	ACTGGG	1 cut(s)	594
BpiI	GAAGAC	3 cut(s)	174, 555, 702
BpuEI	CTTGAG	1 cut(s)	330
BpuMI	CCSGG	2 cut(s)	451, 452
BsaJI	CCNNGG	3 cut(s)	278, 450, 624
BsaWI	WCCGGW	1 cut(s)	61
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse1I	ACTGG	2 cut(s)	48, 600
BseAI	TCCGGA	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	520
BseDI	CCNNGG	3 cut(s)	278, 450, 624
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMII	CTCAG	3 cut(s)	249, 740, 860
BseNI	ACTGG	2 cut(s)	48, 600
BseRI	GAGGAG	1 cut(s)	479
BseXI	GCAGC	1 cut(s)	694
BsgI	GTGCAG	1 cut(s)	878
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	159, 871
BshNI	GGYRCC	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	450
BsiSI	CCGG	2 cut(s)	62, 451
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	2 cut(s)	171, 823
BsmI	GAATGC	1 cut(s)	926
BsnI	GGCC	2 cut(s)	159, 871
BsoBI	CYCGRG	1 cut(s)	450
Bsp13I	TCCGGA	1 cut(s)	61
Bsp143I	GATC	2 cut(s)	79, 842
Bsp19I	CCATGG	1 cut(s)	624
BspACI	CCGC	5 cut(s)	85, 134, 187, 435, 530
BspANI	GGCC	2 cut(s)	159, 871
BspCNI	CTCAG	3 cut(s)	250, 739, 859
BspEI	TCCGGA	1 cut(s)	61
BspFNI	CGCG	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	3 cut(s)	185, 448, 517
BspMAI	CTGCAG	1 cut(s)	77
BspPI	GGATC	1 cut(s)	87
BspT107I	GGYRCC	1 cut(s)	183
BsrBI	CCGCTC	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	48, 600
BssECI	CCNNGG	3 cut(s)	278, 450, 624
BssMI	GATC	2 cut(s)	79, 842
BssSI	CACGAG	1 cut(s)	129
BssT1I	CCWWGG	2 cut(s)	278, 624
Bst2BI	CACGAG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	520
Bst4CI	ACNGT	2 cut(s)	44, 689
BstAPI	GCANNNNNTGC	2 cut(s)	149, 932
BstC8I	GCNNGC	2 cut(s)	751, 873
BstDEI	CTNAG	5 cut(s)	258, 363, 726, 735, 846
BstDSI	CCRYGG	1 cut(s)	624
BstF5I	GGATG	1 cut(s)	124
BstFNI	CGCG	1 cut(s)	189
BstKTI	GATC	2 cut(s)	82, 845
BstMAI	GTCTC	2 cut(s)	171, 823
BstMBI	GATC	2 cut(s)	79, 842
BstMWI	GCNNNNNNNGC	5 cut(s)	140, 149, 283, 881, 932
BstNI	CCWGG	1 cut(s)	520
BstSCI	CCNGG	3 cut(s)	449, 450, 518
BstSFI	CTRYAG	1 cut(s)	73
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	694
BstV2I	GAAGAC	3 cut(s)	174, 555, 702
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	2 cut(s)	159, 871
BtgI	CCRYGG	1 cut(s)	624
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	2 cut(s)	687, 699
Cac8I	GCNNGC	2 cut(s)	751, 873
CciI	TCATGA	1 cut(s)	691
Cfr13I	GGNCC	3 cut(s)	158, 211, 685
Cfr9I	CCCGGG	1 cut(s)	450
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	850
CviAII	CATG	6 cut(s)	21, 432, 476, 625, 692, 878
CviJI	RGCY	9 cut(s)	159, 317, 458, 494, 771, 810, 821, 871, 884
CviKI_1	RGCY	9 cut(s)	159, 317, 458, 494, 771, 810, 821, 871, 884
CviQI	GTAC	1 cut(s)	850
DdeI	CTNAG	5 cut(s)	258, 363, 726, 735, 846
DpnI	GATC	2 cut(s)	81, 844
DpnII	GATC	2 cut(s)	79, 842
Eco130I	CCWWGG	2 cut(s)	278, 624
Eco47I	GGWCC	2 cut(s)	211, 685
Eco88I	CYCGRG	1 cut(s)	450
EcoRI	GAATTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	518
EcoT14I	CCWWGG	2 cut(s)	278, 624
ErhI	CCWWGG	2 cut(s)	278, 624
FaeI	CATG	6 cut(s)	24, 435, 479, 628, 695, 881
FatI	CATG	6 cut(s)	20, 431, 475, 624, 691, 877
Fnu4HI	GCNGC	1 cut(s)	708
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	708
FspBI	CTAG	5 cut(s)	153, 314, 459, 495, 501
GluI	GCNGC	1 cut(s)	708
HaeIII	GGCC	2 cut(s)	159, 871
HapII	CCGG	2 cut(s)	62, 451
HgaI	GACGC	1 cut(s)	179
Hin1II	CATG	6 cut(s)	24, 435, 479, 628, 695, 881
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HinfI	GANTC	6 cut(s)	5, 25, 58, 245, 404, 629
HpaII	CCGG	2 cut(s)	62, 451
Hpy166II	GTNNAC	2 cut(s)	685, 732
Hpy188I	TCNGA	2 cut(s)	259, 941
Hpy188III	TCNNGA	4 cut(s)	62, 330, 347, 692
Hpy8I	GTNNAC	2 cut(s)	685, 732
HpyAV	CCTTC	2 cut(s)	290, 670
HpyCH4III	ACNGT	2 cut(s)	44, 689
HpyCH4V	TGCA	8 cut(s)	75, 128, 236, 635, 710, 859, 926, 935
HpyF10VI	GCNNNNNNNGC	5 cut(s)	140, 149, 283, 881, 932
HpyF3I	CTNAG	5 cut(s)	258, 363, 726, 735, 846
Hsp92II	CATG	6 cut(s)	24, 435, 479, 628, 695, 881
Kpn2I	TCCGGA	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	79, 842
LmnI	GCTCC	1 cut(s)	818
Lsp1109I	GCAGC	1 cut(s)	694
LweI	GCATC	3 cut(s)	644, 694, 736
MaeI	CTAG	5 cut(s)	153, 314, 459, 495, 501
MaeIII	GTNAC	5 cut(s)	305, 391, 471, 545, 714
MalI	GATC	2 cut(s)	81, 844
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	2 cut(s)	79, 842
MboII	GAAGA	6 cut(s)	179, 535, 549, 555, 707, 890
MflI	RGATCY	1 cut(s)	79
MluCI	AATT	3 cut(s)	191, 231, 800
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	7 cut(s)	58, 149, 202, 253, 448, 457, 480
MroI	TCCGGA	1 cut(s)	61
MspI	CCGG	2 cut(s)	62, 451
MspR9I	CCNGG	3 cut(s)	451, 452, 520
Mva1269I	GAATGC	1 cut(s)	926
MvaI	CCWGG	1 cut(s)	520
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	5 cut(s)	140, 149, 283, 881, 932
NciI	CCSGG	2 cut(s)	451, 452
NcoI	CCATGG	1 cut(s)	624
NdeII	GATC	2 cut(s)	79, 842
NlaIII	CATG	6 cut(s)	24, 435, 479, 628, 695, 881
NlaIV	GGNNCC	3 cut(s)	185, 448, 517
NmuCI	GTSAC	2 cut(s)	391, 545
PagI	TCATGA	1 cut(s)	691
PctI	GAATGC	1 cut(s)	926
PfeI	GAWTC	6 cut(s)	5, 25, 58, 245, 404, 629
PflMI	CCANNNNNTGG	1 cut(s)	54
PfoI	TCCNGGA	1 cut(s)	518
PkrI	GCNGC	1 cut(s)	709
Psp6I	CCWGG	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	518
PspN4I	GGNNCC	3 cut(s)	185, 448, 517
PspPI	GGNCC	3 cut(s)	158, 211, 685
PstI	CTGCAG	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	1 cut(s)	851
RsaNI	GTAC	1 cut(s)	850
SatI	GCNGC	1 cut(s)	708
Sau3AI	GATC	2 cut(s)	79, 842
Sau96I	GGNCC	3 cut(s)	158, 211, 685
ScaI	AGTACT	1 cut(s)	851
ScrFI	CCNGG	3 cut(s)	451, 452, 520
SetI	ASST	7 cut(s)	319, 387, 496, 586, 773, 823, 886
SfaNI	GCATC	3 cut(s)	644, 694, 736
SfcI	CTRYAG	1 cut(s)	73
SinI	GGWCC	2 cut(s)	211, 685
SmaI	CCCGGG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
Sse9I	AATT	3 cut(s)	191, 231, 800
SsiI	CCGC	5 cut(s)	85, 134, 187, 435, 530
SspMI	CTAG	5 cut(s)	153, 314, 459, 495, 501
StyD4I	CCNGG	3 cut(s)	449, 450, 518
StyI	CCWWGG	2 cut(s)	278, 624
TaaI	ACNGT	2 cut(s)	44, 689
TasI	AATT	3 cut(s)	191, 231, 800
TatI	WGTACW	1 cut(s)	849
TfiI	GAWTC	6 cut(s)	5, 25, 58, 245, 404, 629
TscAI	CASTG	2 cut(s)	687, 706
TseFI	GTSAC	2 cut(s)	391, 545
TseI	GCWGC	1 cut(s)	707
Tsp45I	GTSAC	2 cut(s)	391, 545
TspDTI	ATGAA	3 cut(s)	184, 708, 771
TspGWI	ACGGA	2 cut(s)	410, 920
TspMI	CCCGGG	1 cut(s)	450
TspRI	CASTG	2 cut(s)	687, 706
Van91I	CCANNNNNTGG	1 cut(s)	54
VpaK11BI	GGWCC	2 cut(s)	211, 685
XapI	RAATTY	1 cut(s)	191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XmaI	CCCGGG	1 cut(s)	450
XspI	CTAG	5 cut(s)	153, 314, 459, 495, 501
ZrmI	AGTACT	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.