pycom15g06820

Syntaxin 6, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010278
Physical Location & Seq
Forward (+)
4189601 .. 4191534
1934 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g06820.5

Sequence Viewer

Length: 1038 bp
ATGACGTCAGGTTTTGGTCGGTGGGAGAAAGATCCATTTTTCCCGGCGGCCGAGGAAGTTCAAGAATCCGCCGACAGGATGGAATCTACACATCGAACATGGATCCACGCCAGGAAAGACGCTTCCAGTATGTGGGATCCTGAGGAACTTGGCAGGGATCTGCGAACAACTCTTGGAACTACCAAATGGCAGTTAGAGGAGTTTGTACGAGCAGTCAGGTCAAGTTATGCGAGAAGGTCATGTGAAGACGCAAGAGACAGGCACCATCAATTCATTGTTGCCATCGAGGATCAGGTTTCCAAAATTGAAAAATCGTTAAAGGAGGCTGCCCTTTCTGAGGGCAAGGCTACTCAACCTTGGGTGCGTTTGGATGAAGGGGAGTGCAATGAACTTGCGTTTTTTCTTTCTGGGCCATCTGCATCTGAAGAGAAAGTTATTGCCAAGGGTAACGACAGGGATGTTGAAAACCCACGAATGACAGATGGAGATACGGCACCAGGTAGTTCGAAGAACTCATGTGGTTCGACTGAGCTGGGCTCCCAGAAGACTAGGGAGGAGAAGCCACATGGGCATAGGAGGACAGCTAGTGCTAGTGCTGACATTGGTGCCTTGAAGATTGCAGTTTTCGACGACGGATACGTACCAAGTACTTCTGCTATGATGGTTGAGCATCCTGTACGAAAGATTCCAAGTATGTCTGGGTTTCTTAGTTCCATGGAAACCGCATCAAAGTTGAAGTGGTCAAAGAATGGTTTTAGGAAGTGGAAGGCAGTGGACTGTCATGAAGACGCTGATGCTGCATTGTTGCCATCTACTCAGTTAACTAGGGGCATCAATGCTTGCTTTGAAAAAAATAAGAGTTGTTTGGATAGTTGCGATGAATGTTACGATAAACCATTGTATGGCTGGTACGGAGCTATTCAAAGACAACTTCAAAGGTCTCAGTACTATATGCAATATAGTTGGCCTGCCCGCGTAGCTCTTTGGATTGTTATTCTCCTTTTCTTGATTGTTTTAATAGCATTGCGTGCGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Syntaxin-6_N

Protein Analysis

346

Amino Acids

38.9

Weight (kDa)

6.29

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccB1I GGYRCC 3 cut(s) 261, 493, 605
AccB7I CCANNNNNTGG 2 cut(s) 132, 902
AccII CGCG 1 cut(s) 975
AciI CCGC 4 cut(s) 47, 69, 723, 973
AclWI GGATC 7 cut(s) 26, 97, 110, 131, 144, 165, 297
AcoI YGGCCR 1 cut(s) 48
AcuI CTGAAG 1 cut(s) 444
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 6 cut(s) 207, 642, 649, 678, 911, 947
AfiI CCNNNNNNNGG 4 cut(s) 75, 132, 337, 902
AgsI TTSAA 8 cut(s) 62, 308, 464, 613, 736, 848, 923, 935
AjnI CCWGG 2 cut(s) 110, 496
AluBI AGCT 4 cut(s) 532, 584, 917, 980
AluI AGCT 4 cut(s) 532, 584, 917, 980
Alw26I GTCTC 2 cut(s) 249, 945
AlwI GGATC 7 cut(s) 26, 97, 110, 131, 144, 165, 297
AoxI GGCC 3 cut(s) 48, 410, 965
ApeKI GCWGC 2 cut(s) 326, 797
AspS9I GGNCC 1 cut(s) 410
AsuC2I CCSGG 1 cut(s) 44
AsuII TTCGAA 1 cut(s) 506
AxyI CCTNAGG 1 cut(s) 141
BamHI GGATCC 2 cut(s) 102, 136
BanI GGYRCC 3 cut(s) 261, 493, 605
BanII GRGCYC 1 cut(s) 539
BbsI GAAGAC 3 cut(s) 252, 551, 792
BbvI GCAGC 2 cut(s) 313, 784
BccI CCATC 7 cut(s) 73, 273, 290, 421, 476, 655, 817
BceAI ACGGC 1 cut(s) 507
BciT130I CCWGG 2 cut(s) 112, 498
BciVI GTATCC 1 cut(s) 629
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 2 cut(s) 249, 945
BfaI CTAG 4 cut(s) 549, 585, 591, 825
BfuI GTATCC 1 cut(s) 629
BglI GCCNNNNNGGC 1 cut(s) 568
BisI GCNGC 3 cut(s) 48, 327, 798
BlsI GCNGC 3 cut(s) 49, 328, 799
BmcAI AGTACT 2 cut(s) 649, 947
Bme1390I CCNGG 3 cut(s) 44, 112, 498
BmgT120I GGNCC 1 cut(s) 410
BmiI GGNNCC 6 cut(s) 104, 138, 263, 495, 538, 607
BmrFI CCNGG 3 cut(s) 44, 112, 498
BmsI GCATC 5 cut(s) 428, 679, 734, 784, 840
BpiI GAAGAC 3 cut(s) 252, 551, 792
BplI GAGNNNNNCTC 2 cut(s) 521, 553
Bpu14I TTCGAA 1 cut(s) 506
BpuMI CCSGG 1 cut(s) 44
BsaAI YACGTR 1 cut(s) 640
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 945
BsaJI CCNNGG 4 cut(s) 51, 356, 441, 714
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 132, 337, 902
Bse1I ACTGG 1 cut(s) 126
Bse21I CCTNAGG 1 cut(s) 141
Bse3DI GCAATG 2 cut(s) 391, 1022
BseBI CCWGG 2 cut(s) 112, 498
BseDI CCNNGG 4 cut(s) 51, 356, 441, 714
BseGI GGATG 4 cut(s) 84, 376, 463, 670
BseLI CCNNNNNNNGG 4 cut(s) 75, 132, 337, 902
BseMI GCAATG 2 cut(s) 391, 1022
BseMII CTCAG 5 cut(s) 132, 327, 519, 830, 956
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 2 cut(s) 212, 569
BseX3I CGGCCG 1 cut(s) 48
BseXI GCAGC 2 cut(s) 313, 784
BseYI CCCAGC 1 cut(s) 532
Bsh1236I CGCG 1 cut(s) 975
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 3 cut(s) 50, 412, 967
BshNI GGYRCC 3 cut(s) 261, 493, 605
BsiEI CGRYCG 1 cut(s) 51
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 4 cut(s) 75, 132, 337, 902
BsmAI GTCTC 2 cut(s) 249, 945
BsnI GGCC 3 cut(s) 50, 412, 967
Bso31I GGTCTC 1 cut(s) 945
Bsp119I TTCGAA 1 cut(s) 506
Bsp1286I GDGCHC 1 cut(s) 539
Bsp143I GATC 6 cut(s) 31, 102, 136, 157, 289, 1032
Bsp19I CCATGG 1 cut(s) 714
BspACI CCGC 4 cut(s) 47, 69, 723, 973
BspANI GGCC 3 cut(s) 50, 412, 967
BspCNI CTCAG 5 cut(s) 133, 328, 520, 829, 955
BspFNI CGCG 1 cut(s) 975
BspHI TCATGA 1 cut(s) 781
BspLI GGNNCC 6 cut(s) 104, 138, 263, 495, 538, 607
BspPI GGATC 7 cut(s) 26, 97, 110, 131, 144, 165, 297
BspT104I TTCGAA 1 cut(s) 506
BspT107I GGYRCC 3 cut(s) 261, 493, 605
BspTNI GGTCTC 1 cut(s) 945
BsrDI GCAATG 2 cut(s) 391, 1022
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 4 cut(s) 51, 356, 441, 714
BssMI GATC 6 cut(s) 31, 102, 136, 157, 289, 1032
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 3 cut(s) 356, 441, 714
Bst2UI CCWGG 2 cut(s) 112, 498
Bst4CI ACNGT 1 cut(s) 779
Bst6I CTCTTC 1 cut(s) 420
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 1028
BstBAI YACGTR 1 cut(s) 640
BstBI TTCGAA 1 cut(s) 506
BstC8I GCNNGC 4 cut(s) 841, 969, 973, 1029
BstDEI CTNAG 6 cut(s) 141, 336, 528, 707, 816, 942
BstDSI CCRYGG 1 cut(s) 714
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 4 cut(s) 84, 376, 463, 670
BstFNI CGCG 1 cut(s) 975
BstKTI GATC 6 cut(s) 34, 105, 139, 160, 292, 1035
BstMAI GTCTC 2 cut(s) 249, 945
BstMBI GATC 6 cut(s) 31, 102, 136, 157, 289, 1032
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 4 cut(s) 568, 797, 977, 1028
BstNI CCWGG 2 cut(s) 112, 498
BstSCI CCNGG 3 cut(s) 42, 110, 496
BstSNI TACGTA 1 cut(s) 640
BstUI CGCG 1 cut(s) 975
BstV1I GCAGC 2 cut(s) 313, 784
BstV2I GAAGAC 3 cut(s) 252, 551, 792
BstX2I RGATCY 4 cut(s) 31, 102, 136, 157
BstYI RGATCY 4 cut(s) 31, 102, 136, 157
BstZI CGGCCG 1 cut(s) 48
Bsu36I CCTNAGG 1 cut(s) 141
BsuI GTATCC 1 cut(s) 629
BsuRI GGCC 3 cut(s) 50, 412, 967
BtgI CCRYGG 1 cut(s) 714
BtgZI GCGATG 1 cut(s) 891
BtsCI GGATG 4 cut(s) 84, 376, 463, 670
BtsI GCAGTG 1 cut(s) 777
BtsIMutI CAGTG 1 cut(s) 777
Cac8I GCNNGC 4 cut(s) 841, 969, 973, 1029
CciI TCATGA 1 cut(s) 781
Cfr13I GGNCC 1 cut(s) 410
CseI GACGC 3 cut(s) 128, 257, 797
CsiI ACCWGGT 1 cut(s) 496
Csp6I GTAC 6 cut(s) 206, 641, 648, 677, 910, 946
CviAII CATG 6 cut(s) 99, 240, 516, 566, 715, 782
CviQI GTAC 6 cut(s) 206, 641, 648, 677, 910, 946
DdeI CTNAG 6 cut(s) 141, 336, 528, 707, 816, 942
DpnI GATC 6 cut(s) 33, 104, 138, 159, 291, 1034
DpnII GATC 6 cut(s) 31, 102, 136, 157, 289, 1032
EaeI YGGCCR 1 cut(s) 48
EagI CGGCCG 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 420
EciI GGCGGA 1 cut(s) 58
EclXI CGGCCG 1 cut(s) 48
Eco105I TACGTA 1 cut(s) 640
Eco130I CCWWGG 3 cut(s) 356, 441, 714
Eco24I GRGCYC 1 cut(s) 539
Eco31I GGTCTC 1 cut(s) 945
Eco52I CGGCCG 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 444
Eco81I CCTNAGG 1 cut(s) 141
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoRII CCWGG 2 cut(s) 110, 496
EcoT14I CCWWGG 3 cut(s) 356, 441, 714
EcoT38I GRGCYC 1 cut(s) 539
ErhI CCWWGG 3 cut(s) 356, 441, 714
FaeI CATG 6 cut(s) 102, 243, 519, 569, 718, 785
FatI CATG 6 cut(s) 98, 239, 515, 565, 714, 781
FauI CCCGC 1 cut(s) 980
Fnu4HI GCNGC 3 cut(s) 48, 327, 798
FokI GGATG 4 cut(s) 91, 383, 470, 657
FriOI GRGCYC 1 cut(s) 539
Fsp4HI GCNGC 3 cut(s) 48, 327, 798
FspBI CTAG 4 cut(s) 549, 585, 591, 825
GluI GCNGC 3 cut(s) 48, 327, 798
GsaI CCCAGC 1 cut(s) 536
HaeIII GGCC 3 cut(s) 50, 412, 967
HapII CCGG 1 cut(s) 44
HgaI GACGC 3 cut(s) 128, 257, 797
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 102, 243, 519, 569, 718, 785
HincII GTYRAC 1 cut(s) 822
HindII GTYRAC 1 cut(s) 822
HinfI GANTC 3 cut(s) 65, 83, 685
HpaI GTTAAC 1 cut(s) 822
HpaII CCGG 1 cut(s) 44
Hpy166II GTNNAC 2 cut(s) 775, 822
Hpy188I TCNGA 3 cut(s) 337, 424, 1037
Hpy188III TCNNGA 4 cut(s) 62, 140, 782, 1006
Hpy8I GTNNAC 2 cut(s) 775, 822
Hpy99I CGWCG 2 cut(s) 632, 635
HpyAV CCTTC 3 cut(s) 228, 368, 760
HpyCH4III ACNGT 1 cut(s) 779
HpyCH4IV ACGT 2 cut(s) 5, 639
HpyCH4V TGCA 5 cut(s) 384, 419, 620, 800, 955
HpyF10VI GCNNNNNNNGC 4 cut(s) 568, 797, 977, 1028
HpyF3I CTNAG 6 cut(s) 141, 336, 528, 707, 816, 942
HpySE526I ACGT 2 cut(s) 5, 639
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 102, 243, 519, 569, 718, 785
KspAI GTTAAC 1 cut(s) 822
Kzo9I GATC 6 cut(s) 31, 102, 136, 157, 289, 1032
LmnI GCTCC 2 cut(s) 542, 914
Lsp1109I GCAGC 2 cut(s) 313, 784
LweI GCATC 5 cut(s) 428, 679, 734, 784, 840
MabI ACCWGGT 1 cut(s) 496
MaeI CTAG 4 cut(s) 549, 585, 591, 825
MaeII ACGT 2 cut(s) 5, 639
MaeIII GTNAC 2 cut(s) 446, 884
MalI GATC 6 cut(s) 33, 104, 138, 159, 291, 1034
MboI GATC 6 cut(s) 31, 102, 136, 157, 289, 1032
MboII GAAGA 6 cut(s) 257, 437, 520, 556, 625, 797
MflI RGATCY 4 cut(s) 31, 102, 136, 157
MhlI GDGCHC 1 cut(s) 539
MluCI AATT 2 cut(s) 269, 303
MnlI CCTC 8 cut(s) 46, 136, 190, 280, 316, 331, 547, 570
MseI TTAA 3 cut(s) 317, 821, 1016
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 3 cut(s) 44, 112, 498
MvaI CCWGG 2 cut(s) 112, 498
MvnI CGCG 1 cut(s) 975
MwoI GCNNNNNNNGC 4 cut(s) 568, 797, 977, 1028
NciI CCSGG 1 cut(s) 44
NcoI CCATGG 1 cut(s) 714
NdeII GATC 6 cut(s) 31, 102, 136, 157, 289, 1032
NlaIII CATG 6 cut(s) 102, 243, 519, 569, 718, 785
NlaIV GGNNCC 6 cut(s) 104, 138, 263, 495, 538, 607
NmeAIII GCCGAG 1 cut(s) 76
NspV TTCGAA 1 cut(s) 506
PagI TCATGA 1 cut(s) 781
PcsI WCGNNNNNNNCGW 1 cut(s) 636
PfeI GAWTC 3 cut(s) 65, 83, 685
PflMI CCANNNNNTGG 2 cut(s) 132, 902
PkrI GCNGC 3 cut(s) 49, 328, 799
Ppu21I YACGTR 1 cut(s) 640
Psp6I CCWGG 2 cut(s) 110, 496
PspFI CCCAGC 1 cut(s) 532
PspGI CCWGG 2 cut(s) 110, 496
PspN4I GGNNCC 6 cut(s) 104, 138, 263, 495, 538, 607
PspPI GGNCC 1 cut(s) 410
PsuI RGATCY 4 cut(s) 31, 102, 136, 157
RsaI GTAC 6 cut(s) 207, 642, 649, 678, 911, 947
RsaNI GTAC 6 cut(s) 206, 641, 648, 677, 910, 946
SaqAI TTAA 3 cut(s) 317, 821, 1016
SatI GCNGC 3 cut(s) 48, 327, 798
Sau3AI GATC 6 cut(s) 31, 102, 136, 157, 289, 1032
Sau96I GGNCC 1 cut(s) 410
ScaI AGTACT 2 cut(s) 649, 947
ScrFI CCNGG 3 cut(s) 44, 112, 498
SduI GDGCHC 1 cut(s) 539
SexAI ACCWGGT 1 cut(s) 496
SfaNI GCATC 5 cut(s) 428, 679, 734, 784, 840
SfuI TTCGAA 1 cut(s) 506
SnaBI TACGTA 1 cut(s) 640
Sse9I AATT 2 cut(s) 269, 303
SsiI CCGC 4 cut(s) 47, 69, 723, 973
SspMI CTAG 4 cut(s) 549, 585, 591, 825
StyD4I CCNGG 3 cut(s) 42, 110, 496
StyI CCWWGG 3 cut(s) 356, 441, 714
TaaI ACNGT 1 cut(s) 779
TaiI ACGT 2 cut(s) 8, 642
TaqI TCGA 5 cut(s) 94, 285, 506, 524, 627
TasI AATT 2 cut(s) 269, 303
TatI WGTACW 2 cut(s) 647, 945
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 3 cut(s) 65, 83, 685
Tru1I TTAA 3 cut(s) 317, 821, 1016
Tru9I TTAA 3 cut(s) 317, 821, 1016
TscAI CASTG 1 cut(s) 777
TseI GCWGC 2 cut(s) 326, 797
TspDTI ATGAA 5 cut(s) 262, 387, 402, 798, 894
TspGWI ACGGA 2 cut(s) 648, 927
TspRI CASTG 1 cut(s) 777
Van91I CCANNNNNTGG 2 cut(s) 132, 902
XagI CCTNNNNNAGG 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 903
XspI CTAG 4 cut(s) 549, 585, 591, 825
ZraI GACGTC 1 cut(s) 6
ZrmI AGTACT 2 cut(s) 649, 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.