Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016971.1

Orthogroup ID

OG0010278

Physical Location & Seq

Genomic Coordinates Reverse (-)

7780 .. 9167

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016971.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atggcgtcgagttttgatcggtgggagaaggatccttatttctcggcggccgagcaagttcaagaatctgctgacaggatggaatctacatatagaacatggattcacgccaagaaagacagttccagtatgtggaatccggaggaactctgcagggatctccgcactactcttggaactaccaaatggcagttggatgagtttgcacgagcggtcagggcaagttatgctagaggcccaagtgaagacgcaagagacaggcaccgcgaattcattgttgctatggaggaccagatttctaaagttgaaattgcattacgggaatctgccttttctgagggcaagacttctctgccttgggtgcgtttggacgaaggagagtgtaacgaactagcttcttttctttctggactgactgcttctcaagagaaagttcttgctaagagtaaggatattgaaaacctacgagtgacggatagagaatcagcaccagattgttcaaagaactcatgcggttcagggggttcccgggaggctagggaggagaagttacatgggcataggaggacagctagtgctagtgctgatattggttcctggaagattgcggtctatgatgatggtcacttaccatcttcgtcttctatgatgattgaacaacctgtgcgaaagatacccagtttctctgggtttattagttccatggaatctgcatcgaagttgaagtggtcaaagaatggttttaggaagtggaaggcagtggaccgtcatgaagacactgatgctgcattgttaccatctactcagttgactaaggtgtgtgtgctttggtgcttggatttaatttactcttggaacttcacttttcttttatgtgttactaaagaaaactcttcgttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Syntaxin-6_N

Protein Analysis

300

Amino Acids

33.97

Weight (kDa)

5.96

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27700
fragaria_vesca	FvH4_2g33360 FvH4_2g33360 FvH4_2g33360
malus_domestica	MD08G1088200.v1.1 MD15G1073000.v1.1
prunus_persica	Prupe.1G425900_v2.0.a1
pyrus_communis	pycom08g07180 pycom15g06820
rosa_chinensis	RchiOBHm_Chr6g0309221
rosa_laevigata	RLG00000010581
rosa_multiflora	Rmu_sc0007078.1_g000001 Rmu_sc0016971.1_g000005 Rmu_sc0020102.1_g000010
rosa_roxburghii	Rroxscaffold_7G00159550
rosa_rugosa	Rorug06G0370400
rosa_samantha	Rh6AG483600 Rh6BG492700 Rh6CG497600 Rh6DG484200
rosa_wichuraiana	Rw6G042110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	261
AccB7I	CCANNNNNTGG	1 cut(s)	132
AccBSI	CCGCTC	1 cut(s)	212
AccII	CGCG	1 cut(s)	267
AccIII	TCCGGA	1 cut(s)	139
AciI	CCGC	6 cut(s)	47, 163, 212, 265, 513, 608
AclWI	GGATC	3 cut(s)	26, 39, 165
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	269
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgsI	TTSAA	6 cut(s)	62, 308, 458, 501, 656, 724
AjnI	CCWGG	1 cut(s)	596
AluBI	AGCT	2 cut(s)	395, 572
AluI	AGCT	2 cut(s)	395, 572
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	3 cut(s)	26, 39, 165
Ama87I	CYCGRG	1 cut(s)	528
Aor13HI	TCCGGA	1 cut(s)	139
AoxI	GGCC	2 cut(s)	48, 235
ApeKI	GCWGC	1 cut(s)	785
ApoI	RAATTY	1 cut(s)	269
AspS9I	GGNCC	3 cut(s)	236, 289, 763
AsuC2I	CCSGG	2 cut(s)	529, 530
AvaI	CYCGRG	1 cut(s)	528
AvaII	GGWCC	2 cut(s)	289, 763
BamHI	GGATCC	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	261
BauI	CACGAG	1 cut(s)	207
BbsI	GAAGAC	3 cut(s)	252, 633, 780
BbvI	GCAGC	1 cut(s)	772
BccI	CCATC	4 cut(s)	73, 614, 640, 805
BciT130I	CCWGG	1 cut(s)	598
BcnI	CCSGG	2 cut(s)	529, 530
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	5 cut(s)	231, 392, 537, 573, 579
BfmI	CTRYAG	1 cut(s)	151
BisI	GCNGC	2 cut(s)	48, 786
BlsI	GCNGC	2 cut(s)	49, 787
Bme1390I	CCNGG	3 cut(s)	529, 530, 598
Bme18I	GGWCC	2 cut(s)	289, 763
BmeT110I	CYCGRG	1 cut(s)	528
BmgT120I	GGNCC	3 cut(s)	236, 289, 763
BmiI	GGNNCC	4 cut(s)	33, 263, 526, 595
BmrFI	CCNGG	3 cut(s)	529, 530, 598
BmrI	ACTGGG	1 cut(s)	672
BmsI	GCATC	2 cut(s)	722, 772
BmuI	ACTGGG	1 cut(s)	672
BpiI	GAAGAC	3 cut(s)	252, 633, 780
BpuEI	CTTGAG	1 cut(s)	408
BpuMI	CCSGG	2 cut(s)	529, 530
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	356, 528, 702
BsaWI	WCCGGW	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	533, 563
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse1I	ACTGG	2 cut(s)	126, 678
BseAI	TCCGGA	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	598
BseDI	CCNNGG	3 cut(s)	356, 528, 702
BseGI	GGATG	2 cut(s)	84, 202
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMII	CTCAG	2 cut(s)	327, 818
BseNI	ACTGG	2 cut(s)	126, 678
BseRI	GAGGAG	1 cut(s)	557
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	772
Bsh1236I	CGCG	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	50, 237
BshNI	GGYRCC	1 cut(s)	261
BsiEI	CGRYCG	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	528
BsiSI	CCGG	2 cut(s)	140, 529
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	50, 237
BsoBI	CYCGRG	1 cut(s)	528
Bsp13I	TCCGGA	1 cut(s)	139
Bsp143I	GATC	3 cut(s)	16, 31, 157
Bsp19I	CCATGG	1 cut(s)	702
BspACI	CCGC	6 cut(s)	47, 163, 212, 265, 513, 608
BspANI	GGCC	2 cut(s)	50, 237
BspCNI	CTCAG	2 cut(s)	328, 817
BspEI	TCCGGA	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	267
BspHI	TCATGA	1 cut(s)	769
BspLI	GGNNCC	4 cut(s)	33, 263, 526, 595
BspMAI	CTGCAG	1 cut(s)	155
BspPI	GGATC	3 cut(s)	26, 39, 165
BspT107I	GGYRCC	1 cut(s)	261
BsrBI	CCGCTC	1 cut(s)	212
BsrI	ACTGG	2 cut(s)	126, 678
BssECI	CCNNGG	3 cut(s)	356, 528, 702
BssMI	GATC	3 cut(s)	16, 31, 157
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	207
BssT1I	CCWWGG	2 cut(s)	356, 702
Bst2BI	CACGAG	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	598
Bst4CI	ACNGT	2 cut(s)	122, 767
Bst6I	CTCTTC	1 cut(s)	898
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstDEI	CTNAG	4 cut(s)	336, 441, 804, 813
BstDSI	CCRYGG	1 cut(s)	702
BstF5I	GGATG	2 cut(s)	84, 202
BstFNI	CGCG	1 cut(s)	267
BstKTI	GATC	3 cut(s)	19, 34, 160
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	3 cut(s)	16, 31, 157
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 227, 361
BstNI	CCWGG	1 cut(s)	598
BstSCI	CCNGG	3 cut(s)	527, 528, 596
BstSFI	CTRYAG	1 cut(s)	151
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	772
BstV2I	GAAGAC	3 cut(s)	252, 633, 780
BstX2I	RGATCY	2 cut(s)	31, 157
BstYI	RGATCY	2 cut(s)	31, 157
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	50, 237
BtgI	CCRYGG	1 cut(s)	702
BtsCI	GGATG	2 cut(s)	84, 202
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	2 cut(s)	765, 777
CciI	TCATGA	1 cut(s)	769
Cfr13I	GGNCC	3 cut(s)	236, 289, 763
Cfr9I	CCCGGG	1 cut(s)	528
CseI	GACGC	1 cut(s)	257
CviAII	CATG	5 cut(s)	99, 510, 554, 703, 770
CviJI	RGCY	5 cut(s)	50, 237, 395, 536, 572
CviKI_1	RGCY	5 cut(s)	50, 237, 395, 536, 572
DdeI	CTNAG	4 cut(s)	336, 441, 804, 813
DpnI	GATC	3 cut(s)	18, 33, 159
DpnII	GATC	3 cut(s)	16, 31, 157
EaeI	YGGCCR	1 cut(s)	48
EagI	CGGCCG	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	898
EarI	CTCTTC	1 cut(s)	898
EclXI	CGGCCG	1 cut(s)	48
Eco130I	CCWWGG	2 cut(s)	356, 702
Eco47I	GGWCC	2 cut(s)	289, 763
Eco52I	CGGCCG	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	528
EcoRI	GAATTC	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	596
EcoT14I	CCWWGG	2 cut(s)	356, 702
ErhI	CCWWGG	2 cut(s)	356, 702
FaeI	CATG	5 cut(s)	102, 513, 557, 706, 773
FatI	CATG	5 cut(s)	98, 509, 553, 702, 769
Fnu4HI	GCNGC	2 cut(s)	48, 786
FokI	GGATG	2 cut(s)	91, 209
Fsp4HI	GCNGC	2 cut(s)	48, 786
FspBI	CTAG	5 cut(s)	231, 392, 537, 573, 579
GluI	GCNGC	2 cut(s)	48, 786
HaeIII	GGCC	2 cut(s)	50, 237
HapII	CCGG	2 cut(s)	140, 529
HgaI	GACGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	102, 513, 557, 706, 773
HincII	GTYRAC	1 cut(s)	810
HindII	GTYRAC	1 cut(s)	810
HinfI	GANTC	7 cut(s)	65, 83, 103, 136, 323, 482, 707
HpaII	CCGG	2 cut(s)	140, 529
Hpy166II	GTNNAC	2 cut(s)	763, 810
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	5 cut(s)	62, 140, 408, 425, 770
Hpy8I	GTNNAC	2 cut(s)	763, 810
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	22, 368, 748
HpyCH4III	ACNGT	2 cut(s)	122, 767
HpyCH4V	TGCA	5 cut(s)	153, 206, 314, 713, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 227, 361
HpyF3I	CTNAG	4 cut(s)	336, 441, 804, 813
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	102, 513, 557, 706, 773
Kpn2I	TCCGGA	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	16, 31, 157
Lsp1109I	GCAGC	1 cut(s)	772
LweI	GCATC	2 cut(s)	722, 772
MaeI	CTAG	5 cut(s)	231, 392, 537, 573, 579
MaeIII	GTNAC	6 cut(s)	383, 469, 549, 623, 792, 877
MalI	GATC	3 cut(s)	18, 33, 159
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	3 cut(s)	16, 31, 157
MboII	GAAGA	6 cut(s)	257, 613, 627, 633, 785, 885
MflI	RGATCY	2 cut(s)	31, 157
MluCI	AATT	3 cut(s)	269, 309, 843
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	7 cut(s)	136, 227, 280, 331, 526, 535, 558
MroI	TCCGGA	1 cut(s)	139
MseI	TTAA	1 cut(s)	842
MspI	CCGG	2 cut(s)	140, 529
MspR9I	CCNGG	3 cut(s)	529, 530, 598
MvaI	CCWGG	1 cut(s)	598
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	3 cut(s)	218, 227, 361
NciI	CCSGG	2 cut(s)	529, 530
NcoI	CCATGG	1 cut(s)	702
NdeII	GATC	3 cut(s)	16, 31, 157
NlaIII	CATG	5 cut(s)	102, 513, 557, 706, 773
NlaIV	GGNNCC	4 cut(s)	33, 263, 526, 595
NmeAIII	GCCGAG	2 cut(s)	23, 76
NmuCI	GTSAC	2 cut(s)	469, 623
PagI	TCATGA	1 cut(s)	769
PfeI	GAWTC	7 cut(s)	65, 83, 103, 136, 323, 482, 707
PflMI	CCANNNNNTGG	1 cut(s)	132
PfoI	TCCNGGA	1 cut(s)	596
PkrI	GCNGC	2 cut(s)	49, 787
Psp6I	CCWGG	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	596
PspN4I	GGNNCC	4 cut(s)	33, 263, 526, 595
PspPI	GGNCC	3 cut(s)	236, 289, 763
PstI	CTGCAG	1 cut(s)	155
PsuI	RGATCY	2 cut(s)	31, 157
SaqAI	TTAA	1 cut(s)	842
SatI	GCNGC	2 cut(s)	48, 786
Sau3AI	GATC	3 cut(s)	16, 31, 157
Sau96I	GGNCC	3 cut(s)	236, 289, 763
ScrFI	CCNGG	3 cut(s)	529, 530, 598
SetI	ASST	5 cut(s)	397, 465, 574, 664, 819
SfaNI	GCATC	2 cut(s)	722, 772
SfcI	CTRYAG	1 cut(s)	151
SinI	GGWCC	2 cut(s)	289, 763
SmaI	CCCGGG	1 cut(s)	530
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
Sse9I	AATT	3 cut(s)	269, 309, 843
SsiI	CCGC	6 cut(s)	47, 163, 212, 265, 513, 608
SspMI	CTAG	5 cut(s)	231, 392, 537, 573, 579
StyD4I	CCNGG	3 cut(s)	527, 528, 596
StyI	CCWWGG	2 cut(s)	356, 702
TaaI	ACNGT	2 cut(s)	122, 767
TaqI	TCGA	2 cut(s)	8, 716
TasI	AATT	3 cut(s)	269, 309, 843
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	7 cut(s)	65, 83, 103, 136, 323, 482, 707
Tru1I	TTAA	1 cut(s)	842
Tru9I	TTAA	1 cut(s)	842
TscAI	CASTG	2 cut(s)	765, 784
TseFI	GTSAC	2 cut(s)	469, 623
TseI	GCWGC	1 cut(s)	785
Tsp45I	GTSAC	2 cut(s)	469, 623
TspDTI	ATGAA	2 cut(s)	262, 786
TspGWI	ACGGA	1 cut(s)	488
TspMI	CCCGGG	1 cut(s)	528
TspRI	CASTG	2 cut(s)	765, 784
Van91I	CCANNNNNTGG	1 cut(s)	132
VpaK11BI	GGWCC	2 cut(s)	289, 763
XapI	RAATTY	1 cut(s)	269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XmaI	CCCGGG	1 cut(s)	528
XspI	CTAG	5 cut(s)	231, 392, 537, 573, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.