Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016769

Physical Location & Seq

Genomic Coordinates Forward (+)

25626152 .. 25626783

Gene Structure 632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGTTAGGTTTGTCGATGCTAAGCCGGTGGTGATTCACAGGAAGCAGGCTGAAATTCCGTGGAGCGAGGAGCAAGTCCGTCAACTTTTCAAAAGCTTCGACAGGAACGGAGACGGCAAGCTCTGCAAGGAAGAGCTCAAGGATGCTTTCCGGAAGCTCGGATCGCGGTGGAGCTCCTTCCGGGCTAGGAGAGCATTACGCTATGTAGATTCCAACCACGACGGCCACATTTCAAAAGAGGAGTTCAATGATCTTGTCAACTATGCCCTAGAGTGTGGTTATAAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

97

Amino Acids

11.36

Weight (kDa)

9.23

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	23 - 85	7.8e-13	EF-hand domain pair
EF-hand_1	PF00036	26 - 53	1.4e-07	EF hand domain
EF-hand_6	PF13405	26 - 54	1.3e-08	EF-hand domain
EF-hand_5	PF13202	27 - 48	4.7e-07	EF hand
EF-hand_5	PF13202	66 - 85	9e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016769)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34520
rosa_chinensis	RchiOBHm_Chr6g0307801
rosa_laevigata	RLG00000022883
rosa_multiflora	Rmu_sc0000031.1_g000034 Rmu_sc0001051.1_g000058 Rmu_sc0002790.1_g000009
rosa_rugosa	Rorug03G0244000 Rorug06G0361200 Rorug06G0483700
rosa_samantha	Rh3AG293700 Rh3BG278200 Rh5DG496800 Rh6BG480700 Rh7BG276400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	282, 289
AccII	CGCG	1 cut(s)	166
AccIII	TCCGGA	1 cut(s)	150
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	1 cut(s)	169
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	54
AgsI	TTSAA	3 cut(s)	91, 234, 247
AluBI	AGCT	5 cut(s)	96, 121, 136, 157, 174
AluI	AGCT	5 cut(s)	96, 121, 136, 157, 174
Alw21I	GWGCWC	2 cut(s)	138, 176
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	169
Aor13HI	TCCGGA	1 cut(s)	150
AoxI	GGCC	1 cut(s)	223
ApoI	RAATTY	1 cut(s)	54
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	43
BanII	GRGCYC	2 cut(s)	138, 176
Bbv12I	GWGCWC	2 cut(s)	138, 176
BceAI	ACGGC	2 cut(s)	130, 238
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	2 cut(s)	186, 269
BlpI	GCTNAGC	1 cut(s)	21
Bme1390I	CCNGG	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	2 cut(s)	7, 133
Bpu1102I	GCTNAGC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	59
BsaWI	WCCGGW	1 cut(s)	150
Bse118I	RCCGGY	1 cut(s)	25
BseAI	TCCGGA	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	1 cut(s)	148
BseRI	GAGGAG	2 cut(s)	83, 254
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	1 cut(s)	225
BsiHKAI	GWGCWC	2 cut(s)	138, 176
BsiSI	CCGG	3 cut(s)	26, 151, 181
BsmAI	GTCTC	1 cut(s)	105
BsmBI	CGTCTC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	225
Bsp1286I	GDGCHC	2 cut(s)	138, 176
Bsp13I	TCCGGA	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	161, 250
Bsp1720I	GCTNAGC	1 cut(s)	21
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	1 cut(s)	225
BspEI	TCCGGA	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	166
BspPI	GGATC	1 cut(s)	169
BspQI	GCTCTTC	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	2 cut(s)	161, 250
Bst6I	CTCTTC	1 cut(s)	126
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	48, 119
BstDEI	CTNAG	1 cut(s)	21
BstDSI	CCRYGG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	148
BstFNI	CGCG	1 cut(s)	166
BstKTI	GATC	2 cut(s)	164, 253
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	2 cut(s)	161, 250
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 163, 191
BstSCI	CCNGG	1 cut(s)	180
BstUI	CGCG	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	148
Cac8I	GCNNGC	2 cut(s)	48, 119
Cfr10I	RCCGGY	1 cut(s)	25
CviJI	RGCY	9 cut(s)	25, 50, 96, 121, 136, 157, 174, 185, 225
CviKI_1	RGCY	9 cut(s)	25, 50, 96, 121, 136, 157, 174, 185, 225
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	2 cut(s)	163, 252
DpnII	GATC	2 cut(s)	161, 250
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Ecl136II	GAGCTC	2 cut(s)	136, 174
Eco24I	GRGCYC	2 cut(s)	138, 176
Eco53kI	GAGCTC	2 cut(s)	136, 174
EcoICRI	GAGCTC	2 cut(s)	136, 174
EcoT38I	GRGCYC	2 cut(s)	138, 176
Esp3I	CGTCTC	1 cut(s)	105
FaiI	YATR	4 cut(s)	204, 264, 282, 289
FokI	GGATG	1 cut(s)	155
FriOI	GRGCYC	2 cut(s)	138, 176
FspBI	CTAG	2 cut(s)	186, 269
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	3 cut(s)	26, 151, 181
HincII	GTYRAC	2 cut(s)	83, 259
HindII	GTYRAC	2 cut(s)	83, 259
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	2 cut(s)	34, 209
HpaII	CCGG	3 cut(s)	26, 151, 181
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	2 cut(s)	83, 259
Hpy188I	TCNGA	1 cut(s)	161
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	2 cut(s)	83, 259
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	187
HpyCH4V	TGCA	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 163, 191
HpyF3I	CTNAG	1 cut(s)	21
Kpn2I	TCCGGA	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	161, 250
LguI	GCTCTTC	1 cut(s)	126
LmnI	GCTCC	4 cut(s)	63, 70, 171, 179
LpnPI	CCDG	6 cut(s)	25, 32, 39, 88, 164, 194
LweI	GCATC	2 cut(s)	7, 133
MaeI	CTAG	2 cut(s)	186, 269
MalI	GATC	2 cut(s)	163, 252
MboI	GATC	2 cut(s)	161, 250
MboII	GAAGA	1 cut(s)	143
MhlI	GDGCHC	2 cut(s)	138, 176
MluCI	AATT	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	2 cut(s)	61, 232
MroI	TCCGGA	1 cut(s)	150
MspI	CCGG	3 cut(s)	26, 151, 181
MspR9I	CCNGG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	3 cut(s)	123, 163, 191
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	2 cut(s)	161, 250
PciSI	GCTCTTC	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	34, 209
PsiI	TTATAA	2 cut(s)	282, 289
Psp124BI	GAGCTC	2 cut(s)	138, 176
SacI	GAGCTC	2 cut(s)	138, 176
SapI	GCTCTTC	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	161, 250
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	2 cut(s)	138, 176
SetI	ASST	6 cut(s)	11, 98, 123, 138, 159, 176
SfaNI	GCATC	2 cut(s)	7, 133
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	54
SsiI	CCGC	1 cut(s)	166
SspMI	CTAG	2 cut(s)	186, 269
SstI	GAGCTC	2 cut(s)	138, 176
StyD4I	CCNGG	1 cut(s)	180
TaqI	TCGA	2 cut(s)	15, 99
TasI	AATT	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	34, 209
TspGWI	ACGGA	3 cut(s)	48, 68, 123
XapI	RAATTY	1 cut(s)	54
XspI	CTAG	2 cut(s)	186, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.