Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0016769

Physical Location & Seq

Genomic Coordinates Reverse (-)

27305333 .. 27305764

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG278200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTCCTCCGACCCTGATTTCCCGCCGGCCCAGTTCGTCACCGTCCACGAAGAAGACGACGAAGACTTTGACTGCGAAGACGACATCTTTTCCCAGTACCATTCCACAATCCACGCCGAGCGGAACCGCGATGACATCGTTTCGGAGTCCAATTCCATTTCTAACACCGACGACTTGTCGTCGGACCGCGAGATCCAGGTCAATTTCGTTATGGATCGGTTCCAGCAGCGCGTCGAGCAGTCTCAGGTAACGGCCCGTTCCGTTTTGGTCTCCGGCGACTCCGATTTTGGGGTTGTGGAGGGGAATTGTGACATGGAGGCTATGGGCTTGAGCTCCCGGAGGACGTCAGCGACATCATCCACGATCTTTGCCTCGCCAGAAGACTACTACTTCCGGTCCCGAGTCTGCAGTCGGAAAGATGGGAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

143

Amino Acids

16.24

Weight (kDa)

4.32

Isoelectric Point (pI)

62.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016769)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34520
rosa_chinensis	RchiOBHm_Chr6g0307801
rosa_laevigata	RLG00000022883
rosa_multiflora	Rmu_sc0000031.1_g000034 Rmu_sc0001051.1_g000058 Rmu_sc0002790.1_g000009
rosa_rugosa	Rorug03G0244000 Rorug06G0361200 Rorug06G0483700
rosa_samantha	Rh3AG293700 Rh3BG278200 Rh5DG496800 Rh6BG480700 Rh7BG276400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	347
AccBSI	CCGCTC	1 cut(s)	121
AccII	CGCG	3 cut(s)	129, 189, 231
AciI	CCGC	4 cut(s)	23, 121, 127, 187
AclWI	GGATC	2 cut(s)	187, 222
AcyI	GRCGYC	1 cut(s)	344
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	288
AhdI	GACNNNNNGTC	2 cut(s)	175, 178
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	1 cut(s)	333
AluI	AGCT	1 cut(s)	333
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	2 cut(s)	246, 274
AlwI	GGATC	2 cut(s)	187, 222
Ama87I	CYCGRG	1 cut(s)	399
AoxI	GGCC	2 cut(s)	27, 252
ApeKI	GCWGC	1 cut(s)	226
ArsI	GACNNNNNNTTYG	4 cut(s)	50, 82, 269, 301
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	4 cut(s)	28, 184, 253, 396
AsuC2I	CCSGG	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	399
AvaII	GGWCC	2 cut(s)	184, 396
BanII	GRGCYC	1 cut(s)	335
BbsI	GAAGAC	4 cut(s)	60, 69, 84, 387
Bbv12I	GWGCWC	1 cut(s)	335
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	1 cut(s)	413
BceAI	ACGGC	1 cut(s)	267
BciT130I	CCWGG	1 cut(s)	197
BcnI	CCSGG	1 cut(s)	337
BcoDI	GTCTC	2 cut(s)	246, 274
BfmI	CTRYAG	1 cut(s)	406
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme1390I	CCNGG	2 cut(s)	197, 337
Bme18I	GGWCC	2 cut(s)	184, 396
BmeRI	GACNNNNNGTC	2 cut(s)	175, 178
BmeT110I	CYCGRG	1 cut(s)	399
BmgT120I	GGNCC	4 cut(s)	28, 184, 253, 396
BmiI	GGNNCC	3 cut(s)	125, 221, 398
BmrFI	CCNGG	2 cut(s)	197, 337
BmrI	ACTGGG	2 cut(s)	25, 88
BmuI	ACTGGG	2 cut(s)	25, 88
BpiI	GAAGAC	4 cut(s)	60, 69, 84, 387
BpuEI	CTTGAG	1 cut(s)	349
BpuMI	CCSGG	1 cut(s)	337
BsaHI	GRCGYC	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	274
BsaWI	WCCGGW	1 cut(s)	393
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	2 cut(s)	31, 94
BseBI	CCWGG	1 cut(s)	197
BseGI	GGATG	1 cut(s)	356
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	2 cut(s)	31, 94
BseXI	GCAGC	1 cut(s)	238
Bsh1236I	CGCG	3 cut(s)	129, 189, 231
BshFI	GGCC	2 cut(s)	29, 254
BsiHKAI	GWGCWC	1 cut(s)	335
BsiHKCI	CYCGRG	1 cut(s)	399
BsiSI	CCGG	4 cut(s)	26, 273, 337, 394
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	1 cut(s)	288
BsmAI	GTCTC	2 cut(s)	246, 274
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	29, 254
Bso31I	GGTCTC	1 cut(s)	274
BsoBI	CYCGRG	1 cut(s)	399
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp143I	GATC	3 cut(s)	192, 214, 363
BspACI	CCGC	4 cut(s)	23, 121, 127, 187
BspANI	GGCC	2 cut(s)	29, 254
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	3 cut(s)	129, 189, 231
BspLI	GGNNCC	3 cut(s)	125, 221, 398
BspMAI	CTGCAG	1 cut(s)	410
BspPI	GGATC	2 cut(s)	187, 222
BspTNI	GGTCTC	1 cut(s)	274
BsrBI	CCGCTC	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	2 cut(s)	31, 94
BssAI	RCCGGY	1 cut(s)	25
BssMI	GATC	3 cut(s)	192, 214, 363
BssNI	GRCGYC	1 cut(s)	344
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	43
BstACI	GRCGYC	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	356
BstFNI	CGCG	3 cut(s)	129, 189, 231
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	3 cut(s)	195, 217, 366
BstMAI	GTCTC	2 cut(s)	246, 274
BstMBI	GATC	3 cut(s)	192, 214, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	2 cut(s)	195, 335
BstSFI	CTRYAG	1 cut(s)	406
BstUI	CGCG	3 cut(s)	129, 189, 231
BstV1I	GCAGC	1 cut(s)	238
BstV2I	GAAGAC	4 cut(s)	60, 69, 84, 387
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	29, 254
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	4 cut(s)	28, 184, 253, 396
CpoI	CGGWCCG	1 cut(s)	184
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	97
CspCI	CAANNNNNGTGG	2 cut(s)	349, 384
CspI	CGGWCCG	1 cut(s)	184
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	5 cut(s)	29, 254, 320, 327, 333
CviKI_1	RGCY	5 cut(s)	29, 254, 320, 327, 333
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	3 cut(s)	194, 216, 365
DpnII	GATC	3 cut(s)	192, 214, 363
DriI	GACNNNNNGTC	2 cut(s)	175, 178
Eam1105I	GACNNNNNGTC	2 cut(s)	175, 178
Ecl136II	GAGCTC	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	335
Eco31I	GGTCTC	1 cut(s)	274
Eco47I	GGWCC	2 cut(s)	184, 396
Eco53kI	GAGCTC	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	399
EcoICRI	GAGCTC	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	335
FaeI	CATG	1 cut(s)	316
FaiI	YATR	3 cut(s)	212, 314, 323
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	1 cut(s)	312
FauI	CCCGC	1 cut(s)	30
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	1 cut(s)	343
FriOI	GRGCYC	1 cut(s)	335
Fsp4HI	GCNGC	1 cut(s)	227
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	29, 254
HapII	CCGG	4 cut(s)	26, 273, 337, 394
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	231
Hin1I	GRCGYC	1 cut(s)	344
Hin1II	CATG	1 cut(s)	316
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HinfI	GANTC	3 cut(s)	146, 278, 402
HpaII	CCGG	4 cut(s)	26, 273, 337, 394
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	5 cut(s)	10, 145, 184, 283, 414
Hpy188III	TCNNGA	1 cut(s)	399
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	4 cut(s)	62, 173, 184, 236
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	344
HpyCH4V	TGCA	1 cut(s)	408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	344
Hsp92I	GRCGYC	1 cut(s)	344
Hsp92II	CATG	1 cut(s)	316
HspAI	GCGC	1 cut(s)	229
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	192, 214, 363
LmnI	GCTCC	1 cut(s)	338
Lsp1109I	GCAGC	1 cut(s)	238
MaeII	ACGT	1 cut(s)	344
MaeIII	GTNAC	3 cut(s)	37, 247, 308
MalI	GATC	3 cut(s)	194, 216, 365
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	3 cut(s)	192, 214, 363
MboII	GAAGA	5 cut(s)	62, 65, 74, 89, 392
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	1 cut(s)	335
MluCI	AATT	3 cut(s)	151, 202, 304
MlyI	GAGTC	3 cut(s)	155, 272, 411
MmeI	TCCRAC	3 cut(s)	33, 162, 392
MnlI	CCTC	5 cut(s)	16, 292, 310, 333, 382
MroNI	GCCGGC	1 cut(s)	25
MspI	CCGG	4 cut(s)	26, 273, 337, 394
MspR9I	CCNGG	2 cut(s)	197, 337
MvaI	CCWGG	1 cut(s)	197
MvnI	CGCG	3 cut(s)	129, 189, 231
MwoI	GCNNNNNNNGC	1 cut(s)	235
NaeI	GCCGGC	1 cut(s)	27
NciI	CCSGG	1 cut(s)	337
NdeII	GATC	3 cut(s)	192, 214, 363
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	3 cut(s)	125, 221, 398
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	2 cut(s)	37, 308
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdiI	GCCGGC	1 cut(s)	27
PfoI	TCCNGGA	1 cut(s)	335
PkrI	GCNGC	1 cut(s)	228
PleI	GAGTC	3 cut(s)	154, 272, 410
PpsI	GAGTC	3 cut(s)	154, 272, 410
Psp124BI	GAGCTC	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	3 cut(s)	125, 221, 398
PspPI	GGNCC	4 cut(s)	28, 184, 253, 396
PstI	CTGCAG	1 cut(s)	410
PsuI	RGATCY	1 cut(s)	192
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
Rsr2I	CGGWCCG	1 cut(s)	184
RsrII	CGGWCCG	1 cut(s)	184
SacI	GAGCTC	1 cut(s)	335
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	3 cut(s)	192, 214, 363
Sau96I	GGNCC	4 cut(s)	28, 184, 253, 396
SchI	GAGTC	3 cut(s)	155, 272, 411
ScrFI	CCNGG	2 cut(s)	197, 337
SduI	GDGCHC	1 cut(s)	335
SetI	ASST	4 cut(s)	201, 249, 335, 347
SfcI	CTRYAG	1 cut(s)	406
SinI	GGWCC	2 cut(s)	184, 396
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
Sse9I	AATT	3 cut(s)	151, 202, 304
SsiI	CCGC	4 cut(s)	23, 121, 127, 187
SstI	GAGCTC	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	195, 335
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	1 cut(s)	347
TaqI	TCGA	1 cut(s)	234
TasI	AATT	3 cut(s)	151, 202, 304
TseFI	GTSAC	2 cut(s)	37, 308
TseI	GCWGC	1 cut(s)	226
Tsp45I	GTSAC	2 cut(s)	37, 308
TspGWI	ACGGA	1 cut(s)	250
VpaK11BI	GGWCC	2 cut(s)	184, 396
ZraI	GACGTC	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.