Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0016769

Physical Location & Seq

Genomic Coordinates Reverse (-)

78059452 .. 78061210

Gene Structure 1759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG496800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTCCTCCGATCCTGATTTCCCGCCGGCCCAGTTCGTCACCGTCCACGAAGAAGACGACAAAGACTTTGACTGCGAAGACGACATCTTTTCCCAGTACCATTCCACAATCCACGCCGAGCGGAACCGCGACGACGTCGTTTCAGAGCCCAATTCCATTTCCAACACCGACGACTTGTCGTCGGACCGCGAGAACCAGGTCAATTTCGTTATGGATCGGTTCCAGCAGCGCATCGAGCAGTCTCAGGTAACGGCCCGTTCCGTTTTGGTCTCCGGCGACTCCGATTTTGGGGTTGTGGAGGGGAATTGTGACATGGAGGCTCTGGGCTCGAGCTCCCAGAGGACGTCAGCGACATCATCCACGATCTCTGCCTCGCCAGAAGACTACTTCCGGTCCCGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

134

Amino Acids

15.03

Weight (kDa)

4.2

Isoelectric Point (pI)

56.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016769)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34520
rosa_chinensis	RchiOBHm_Chr6g0307801
rosa_laevigata	RLG00000022883
rosa_multiflora	Rmu_sc0000031.1_g000034 Rmu_sc0001051.1_g000058 Rmu_sc0002790.1_g000009
rosa_rugosa	Rorug03G0244000 Rorug06G0361200 Rorug06G0483700
rosa_samantha	Rh3AG293700 Rh3BG278200 Rh5DG496800 Rh6BG480700 Rh7BG276400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	138, 347
AccBSI	CCGCTC	1 cut(s)	121
AccII	CGCG	2 cut(s)	129, 189
AciI	CCGC	4 cut(s)	23, 121, 127, 187
AclWI	GGATC	2 cut(s)	5, 222
AcyI	GRCGYC	2 cut(s)	135, 344
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	288
AhdI	GACNNNNNGTC	2 cut(s)	175, 178
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	1 cut(s)	333
AluI	AGCT	1 cut(s)	333
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	2 cut(s)	246, 274
AlwI	GGATC	2 cut(s)	5, 222
Ama87I	CYCGRG	1 cut(s)	328
AoxI	GGCC	2 cut(s)	27, 252
ApeKI	GCWGC	1 cut(s)	226
ArsI	GACNNNNNNTTYG	4 cut(s)	50, 82, 269, 301
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	4 cut(s)	28, 184, 253, 393
AsuC2I	CCSGG	1 cut(s)	397
AsuHPI	GGTGA	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	328
AvaII	GGWCC	2 cut(s)	184, 393
BanII	GRGCYC	3 cut(s)	150, 329, 335
BbsI	GAAGAC	3 cut(s)	60, 84, 387
Bbv12I	GWGCWC	1 cut(s)	335
BbvI	GCAGC	1 cut(s)	238
BceAI	ACGGC	1 cut(s)	267
BciT130I	CCWGG	1 cut(s)	197
BcnI	CCSGG	1 cut(s)	397
BcoDI	GTCTC	2 cut(s)	246, 274
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme1390I	CCNGG	2 cut(s)	197, 397
Bme18I	GGWCC	2 cut(s)	184, 393
BmeRI	GACNNNNNGTC	2 cut(s)	175, 178
BmeT110I	CYCGRG	1 cut(s)	328
BmgT120I	GGNCC	4 cut(s)	28, 184, 253, 393
BmiI	GGNNCC	3 cut(s)	125, 221, 395
BmrFI	CCNGG	2 cut(s)	197, 397
BmrI	ACTGGG	2 cut(s)	25, 88
BmsI	GCATC	1 cut(s)	240
BmuI	ACTGGG	2 cut(s)	25, 88
BpiI	GAAGAC	3 cut(s)	60, 84, 387
BpuMI	CCSGG	1 cut(s)	397
BsaHI	GRCGYC	2 cut(s)	135, 344
BsaI	GGTCTC	1 cut(s)	274
BsaWI	WCCGGW	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	2 cut(s)	31, 94
BseBI	CCWGG	1 cut(s)	197
BseGI	GGATG	1 cut(s)	356
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	2 cut(s)	31, 94
BseXI	GCAGC	1 cut(s)	238
Bsh1236I	CGCG	2 cut(s)	129, 189
BshFI	GGCC	2 cut(s)	29, 254
BsiHKAI	GWGCWC	1 cut(s)	335
BsiHKCI	CYCGRG	1 cut(s)	328
BsiSI	CCGG	4 cut(s)	26, 273, 391, 397
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	1 cut(s)	288
BsmAI	GTCTC	2 cut(s)	246, 274
BsmFI	GGGAC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	29, 254
Bso31I	GGTCTC	1 cut(s)	274
BsoBI	CYCGRG	1 cut(s)	328
Bsp1286I	GDGCHC	3 cut(s)	150, 329, 335
Bsp143I	GATC	3 cut(s)	10, 214, 363
BspACI	CCGC	4 cut(s)	23, 121, 127, 187
BspANI	GGCC	2 cut(s)	29, 254
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	2 cut(s)	129, 189
BspLI	GGNNCC	3 cut(s)	125, 221, 395
BspPI	GGATC	2 cut(s)	5, 222
BspTNI	GGTCTC	1 cut(s)	274
BsrBI	CCGCTC	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	2 cut(s)	31, 94
BssAI	RCCGGY	1 cut(s)	25
BssMI	GATC	3 cut(s)	10, 214, 363
BssNI	GRCGYC	2 cut(s)	135, 344
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	43
BstACI	GRCGYC	2 cut(s)	135, 344
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	356
BstFNI	CGCG	2 cut(s)	129, 189
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	3 cut(s)	13, 217, 366
BstMAI	GTCTC	2 cut(s)	246, 274
BstMBI	GATC	3 cut(s)	10, 214, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	2 cut(s)	195, 395
BstUI	CGCG	2 cut(s)	129, 189
BstV1I	GCAGC	1 cut(s)	238
BstV2I	GAAGAC	3 cut(s)	60, 84, 387
BsuRI	GGCC	2 cut(s)	29, 254
BtsCI	GGATG	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	4 cut(s)	28, 184, 253, 393
CpoI	CGGWCCG	1 cut(s)	184
CsiI	ACCWGGT	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	97
CspI	CGGWCCG	1 cut(s)	184
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	6 cut(s)	29, 148, 254, 320, 327, 333
CviKI_1	RGCY	6 cut(s)	29, 148, 254, 320, 327, 333
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	3 cut(s)	12, 216, 365
DpnII	GATC	3 cut(s)	10, 214, 363
DriI	GACNNNNNGTC	2 cut(s)	175, 178
Eam1105I	GACNNNNNGTC	2 cut(s)	175, 178
Ecl136II	GAGCTC	1 cut(s)	333
Eco24I	GRGCYC	3 cut(s)	150, 329, 335
Eco31I	GGTCTC	1 cut(s)	274
Eco47I	GGWCC	2 cut(s)	184, 393
Eco53kI	GAGCTC	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	195
EcoT38I	GRGCYC	3 cut(s)	150, 329, 335
FaeI	CATG	1 cut(s)	316
FaiI	YATR	2 cut(s)	212, 314
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	1 cut(s)	312
FauI	CCCGC	1 cut(s)	30
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	1 cut(s)	343
FriOI	GRGCYC	3 cut(s)	150, 329, 335
Fsp4HI	GCNGC	1 cut(s)	227
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	29, 254
HapII	CCGG	4 cut(s)	26, 273, 391, 397
HhaI	GCGC	1 cut(s)	231
Hin1I	GRCGYC	2 cut(s)	135, 344
Hin1II	CATG	1 cut(s)	316
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HinfI	GANTC	1 cut(s)	278
HpaII	CCGG	4 cut(s)	26, 273, 391, 397
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	4 cut(s)	10, 145, 184, 283
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	5 cut(s)	134, 137, 140, 173, 184
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	2 cut(s)	135, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	2 cut(s)	135, 344
Hsp92I	GRCGYC	2 cut(s)	135, 344
Hsp92II	CATG	1 cut(s)	316
HspAI	GCGC	1 cut(s)	229
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	10, 214, 363
LmnI	GCTCC	1 cut(s)	338
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	1 cut(s)	240
MabI	ACCWGGT	1 cut(s)	195
MaeII	ACGT	2 cut(s)	135, 344
MaeIII	GTNAC	3 cut(s)	37, 247, 308
MalI	GATC	3 cut(s)	12, 216, 365
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	3 cut(s)	10, 214, 363
MboII	GAAGA	4 cut(s)	62, 65, 89, 392
MhlI	GDGCHC	3 cut(s)	150, 329, 335
MluCI	AATT	3 cut(s)	151, 202, 304
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	2 cut(s)	162, 186
MnlI	CCTC	5 cut(s)	16, 292, 310, 333, 382
MroNI	GCCGGC	1 cut(s)	25
MspI	CCGG	4 cut(s)	26, 273, 391, 397
MspR9I	CCNGG	2 cut(s)	197, 397
MvaI	CCWGG	1 cut(s)	197
MvnI	CGCG	2 cut(s)	129, 189
MwoI	GCNNNNNNNGC	1 cut(s)	235
NaeI	GCCGGC	1 cut(s)	27
NciI	CCSGG	1 cut(s)	397
NdeII	GATC	3 cut(s)	10, 214, 363
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	3 cut(s)	125, 221, 395
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	2 cut(s)	37, 308
PaeR7I	CTCGAG	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdiI	GCCGGC	1 cut(s)	27
PflFI	GACNNNGTC	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	395
PkrI	GCNGC	1 cut(s)	228
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
Psp124BI	GAGCTC	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	3 cut(s)	125, 221, 395
PspPI	GGNCC	4 cut(s)	28, 184, 253, 393
PspXI	VCTCGAGB	1 cut(s)	328
PsyI	GACNNNGTC	1 cut(s)	134
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
Rsr2I	CGGWCCG	1 cut(s)	184
RsrII	CGGWCCG	1 cut(s)	184
SacI	GAGCTC	1 cut(s)	335
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	3 cut(s)	10, 214, 363
Sau96I	GGNCC	4 cut(s)	28, 184, 253, 393
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	2 cut(s)	197, 397
SduI	GDGCHC	3 cut(s)	150, 329, 335
SetI	ASST	5 cut(s)	138, 201, 249, 335, 347
SexAI	ACCWGGT	1 cut(s)	195
SfaNI	GCATC	1 cut(s)	240
Sfr274I	CTCGAG	1 cut(s)	328
SinI	GGWCC	2 cut(s)	184, 393
SlaI	CTCGAG	1 cut(s)	328
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
Sse9I	AATT	3 cut(s)	151, 202, 304
SsiI	CCGC	4 cut(s)	23, 121, 127, 187
SstI	GAGCTC	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	195, 395
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	2 cut(s)	138, 347
TaqI	TCGA	2 cut(s)	234, 329
TasI	AATT	3 cut(s)	151, 202, 304
TseFI	GTSAC	2 cut(s)	37, 308
TseI	GCWGC	1 cut(s)	226
Tsp45I	GTSAC	2 cut(s)	37, 308
TspGWI	ACGGA	1 cut(s)	250
Tth111I	GACNNNGTC	1 cut(s)	134
VpaK11BI	GGWCC	2 cut(s)	184, 393
XhoI	CTCGAG	1 cut(s)	328
ZraI	GACGTC	2 cut(s)	136, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.