Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002790.1

Orthogroup ID

OG0016769

Physical Location & Seq

Genomic Coordinates Reverse (-)

34600 .. 34986

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002790.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgctcctctatctcttctctctctctccggcacgagcaacacactccctctctatttctctctctcgccgaagaggacaaccatataaacaagcctttgaatccctcccctactggtcctccaacgaattcgacctttacatctcctccgatcctgatttcccgtcggcccagttcgtcaccgtccacgaagaagacgacgaagactttgacagcgatgacgacatcttttcccagtaccattccacaatccacgccgagcggaacaacgacgacgtcgtttcggagcccaattccatttccaacaccgaccacttgtcgtcagaccgcgagaaccaggtcaatttcttcatggatctgttccagcagcacgtcgagcagtcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

128

Amino Acids

14.87

Weight (kDa)

4.28

Isoelectric Point (pI)

53.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016769)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34520
rosa_chinensis	RchiOBHm_Chr6g0307801
rosa_laevigata	RLG00000022883
rosa_multiflora	Rmu_sc0000031.1_g000034 Rmu_sc0001051.1_g000058 Rmu_sc0002790.1_g000009
rosa_rugosa	Rorug03G0244000 Rorug06G0361200 Rorug06G0483700
rosa_samantha	Rh3AG293700 Rh3BG278200 Rh5DG496800 Rh6BG480700 Rh7BG276400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
AccBSI	CCGCTC	1 cut(s)	262
AccII	CGCG	1 cut(s)	330
AciI	CCGC	2 cut(s)	262, 328
AclWI	GGATC	2 cut(s)	146, 363
AcsI	RAATTY	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	101
AhdI	GACNNNNNGTC	1 cut(s)	316
AjiI	CACGTC	1 cut(s)	373
AjnI	CCWGG	1 cut(s)	336
AlwI	GGATC	2 cut(s)	146, 363
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	367
ApoI	RAATTY	1 cut(s)	128
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AspS9I	GGNCC	2 cut(s)	117, 169
AsuHPI	GGTGA	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	117
BanII	GRGCYC	1 cut(s)	291
BauI	CACGAG	1 cut(s)	33
BbsI	GAAGAC	2 cut(s)	201, 210
BbvI	GCAGC	1 cut(s)	379
BciT130I	CCWGG	1 cut(s)	338
BisI	GCNGC	1 cut(s)	368
BlsI	GCNGC	1 cut(s)	369
Bme1390I	CCNGG	1 cut(s)	338
Bme18I	GGWCC	1 cut(s)	117
BmeRI	GACNNNNNGTC	1 cut(s)	316
BmgBI	CACGTC	1 cut(s)	373
BmgT120I	GGNCC	2 cut(s)	117, 169
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	338
BmrI	ACTGGG	2 cut(s)	166, 229
BmuI	ACTGGG	2 cut(s)	166, 229
BpiI	GAAGAC	2 cut(s)	201, 210
BsaHI	GRCGYC	1 cut(s)	276
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 131, 134, 161
Bse1I	ACTGG	3 cut(s)	119, 172, 235
BseBI	CCWGG	1 cut(s)	338
BseNI	ACTGG	3 cut(s)	119, 172, 235
BseRI	GAGGAG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	379
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	29
BsnI	GGCC	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	151, 355
BspACI	CCGC	2 cut(s)	262, 328
BspANI	GGCC	1 cut(s)	170
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	2 cut(s)	146, 363
BsrBI	CCGCTC	1 cut(s)	262
BsrI	ACTGG	3 cut(s)	119, 172, 235
BssMI	GATC	2 cut(s)	151, 355
BssNI	GRCGYC	1 cut(s)	276
BssSI	CACGAG	1 cut(s)	33
Bst2BI	CACGAG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	2 cut(s)	20, 67
BstACI	GRCGYC	1 cut(s)	276
BstFNI	CGCG	1 cut(s)	330
BstKTI	GATC	2 cut(s)	154, 358
BstMBI	GATC	2 cut(s)	151, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNI	CCWGG	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	336
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	379
BstV2I	GAAGAC	2 cut(s)	201, 210
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	170
BtgZI	GCGATG	1 cut(s)	231
BtrI	CACGTC	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	117, 169
CsiI	ACCWGGT	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	1 cut(s)	352
CviJI	RGCY	3 cut(s)	95, 170, 289
CviKI_1	RGCY	3 cut(s)	95, 170, 289
CviQI	GTAC	1 cut(s)	238
DpnI	GATC	2 cut(s)	153, 357
DpnII	GATC	2 cut(s)	151, 355
DriI	GACNNNNNGTC	1 cut(s)	316
Eam1104I	CTCTTC	2 cut(s)	20, 67
Eam1105I	GACNNNNNGTC	1 cut(s)	316
EarI	CTCTTC	2 cut(s)	20, 67
Eco24I	GRGCYC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	291
FaeI	CATG	1 cut(s)	355
FaiI	YATR	3 cut(s)	85, 87, 353
FatI	CATG	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	368
GluI	GCNGC	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	1 cut(s)	355
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	3 cut(s)	151, 286, 325
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	6 cut(s)	169, 203, 275, 278, 281, 377
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	2 cut(s)	276, 372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpySE526I	ACGT	2 cut(s)	276, 372
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	1 cut(s)	355
Kzo9I	GATC	2 cut(s)	151, 355
LmnI	GCTCC	2 cut(s)	9, 286
LpnPI	CCDG	8 cut(s)	42, 100, 168, 185, 248, 323, 350, 377
Lsp1109I	GCAGC	1 cut(s)	379
MabI	ACCWGGT	1 cut(s)	336
MaeII	ACGT	2 cut(s)	276, 372
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	2 cut(s)	153, 357
MbiI	CCGCTC	1 cut(s)	262
MboI	GATC	2 cut(s)	151, 355
MboII	GAAGA	6 cut(s)	7, 84, 203, 206, 215, 340
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	3 cut(s)	128, 292, 343
MmeI	TCCRAC	2 cut(s)	147, 327
MnlI	CCTC	6 cut(s)	17, 59, 68, 116, 130, 157
MseI	TTAA	1 cut(s)	385
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	338
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	376
NdeII	GATC	2 cut(s)	151, 355
NlaIII	CATG	1 cut(s)	355
NlaIV	GGNNCC	1 cut(s)	288
NmeAIII	GCCGAG	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	178
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 276
PfeI	GAWTC	1 cut(s)	101
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	2 cut(s)	117, 169
PsuI	RGATCY	1 cut(s)	355
PsyI	GACNNNGTC	1 cut(s)	275
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	385
SatI	GCNGC	1 cut(s)	368
Sau3AI	GATC	2 cut(s)	151, 355
Sau96I	GGNCC	2 cut(s)	117, 169
ScrFI	CCNGG	1 cut(s)	338
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	4 cut(s)	138, 279, 342, 375
SexAI	ACCWGGT	1 cut(s)	336
SinI	GGWCC	1 cut(s)	117
Sse9I	AATT	3 cut(s)	128, 292, 343
SsiI	CCGC	2 cut(s)	262, 328
StyD4I	CCNGG	1 cut(s)	336
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	2 cut(s)	279, 375
TaqI	TCGA	2 cut(s)	132, 375
TasI	AATT	3 cut(s)	128, 292, 343
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	385
Tru9I	TTAA	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	1 cut(s)	367
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	340
Tth111I	GACNNNGTC	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	117
XapI	RAATTY	1 cut(s)	128
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.