Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0016769

Physical Location & Seq

Genomic Coordinates Reverse (-)

35577809 .. 35578027

Gene Structure 219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG293700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGACTAGGCATGTCGATGTTCAATGCTGGCCGGAGCAGAAGCCGAAGCTGGTCAAACTTCTGTGGATCAAGGAGCAAGTCCGCGAACTTTTCAAAAGCTTCGACAAGGATGGAGACATCAAGCTCTCCAAGGAAGAGCTCAAGGCAGCCTTCAAGAAGCTCGGATCACGGTGGAGCTCTTTCAGGGCTAAGAGAGCATTACGCATTTACGCTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

72

Amino Acids

8.64

Weight (kDa)

10.07

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_6	PF13405	27 - 55	1.6e-06	EF-hand domain
EF-hand_1	PF00036	27 - 54	5.2e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016769)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34520
rosa_chinensis	RchiOBHm_Chr6g0307801
rosa_laevigata	RLG00000022883
rosa_multiflora	Rmu_sc0000031.1_g000034 Rmu_sc0001051.1_g000058 Rmu_sc0002790.1_g000009
rosa_rugosa	Rorug03G0244000 Rorug06G0361200 Rorug06G0483700
rosa_samantha	Rh3AG293700 Rh3BG278200 Rh5DG496800 Rh6BG480700 Rh7BG276400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	84
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	2 cut(s)	74, 172
AcoI	YGGCCR	1 cut(s)	29
AgsI	TTSAA	3 cut(s)	23, 94, 154
AluBI	AGCT	6 cut(s)	49, 99, 124, 139, 160, 177
AluI	AGCT	6 cut(s)	49, 99, 124, 139, 160, 177
Alw21I	GWGCWC	2 cut(s)	141, 179
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	2 cut(s)	74, 172
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	146
BanII	GRGCYC	2 cut(s)	141, 179
Bbv12I	GWGCWC	2 cut(s)	141, 179
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	1 cut(s)	6
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BpuEI	CTTGAG	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	158
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	31
BsiHKAI	GWGCWC	2 cut(s)	141, 179
BsiSI	CCGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	31
Bsp1286I	GDGCHC	2 cut(s)	141, 179
Bsp143I	GATC	2 cut(s)	66, 164
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	84
BspPI	GGATC	2 cut(s)	74, 172
BspQI	GCTCTTC	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	2 cut(s)	66, 164
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	171
Bst6I	CTCTTC	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	115
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	2 cut(s)	69, 167
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	2 cut(s)	66, 164
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	14
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	29
CviAII	CATG	1 cut(s)	11
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	2 cut(s)	68, 166
DpnII	GATC	2 cut(s)	66, 164
EaeI	YGGCCR	1 cut(s)	29
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Ecl136II	GAGCTC	2 cut(s)	139, 177
Eco130I	CCWWGG	1 cut(s)	129
Eco24I	GRGCYC	2 cut(s)	141, 179
Eco53kI	GAGCTC	2 cut(s)	139, 177
EcoICRI	GAGCTC	2 cut(s)	139, 177
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	2 cut(s)	141, 179
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	1 cut(s)	14
FaiI	YATR	2 cut(s)	12, 215
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	1 cut(s)	10
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	2 cut(s)	141, 179
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	1 cut(s)	14
HindIII	AAGCTT	1 cut(s)	97
HpaII	CCGG	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	14
Kzo9I	GATC	2 cut(s)	66, 164
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	3 cut(s)	34, 73, 174
LpnPI	CCDG	4 cut(s)	13, 35, 45, 169
Lsp1109I	GCAGC	1 cut(s)	158
MaeI	CTAG	1 cut(s)	6
MalI	GATC	2 cut(s)	68, 166
MboI	GATC	2 cut(s)	66, 164
MboII	GAAGA	1 cut(s)	146
MhlI	GDGCHC	2 cut(s)	141, 179
MslI	CAYNNNNRTG	1 cut(s)	15
MspI	CCGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	2 cut(s)	66, 164
NlaIII	CATG	1 cut(s)	14
NspI	RCATGY	1 cut(s)	14
PciSI	GCTCTTC	1 cut(s)	129
PkrI	GCNGC	1 cut(s)	148
Psp124BI	GAGCTC	2 cut(s)	141, 179
RseI	CAYNNNNRTG	1 cut(s)	15
SacI	GAGCTC	2 cut(s)	141, 179
SapI	GCTCTTC	1 cut(s)	129
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	2 cut(s)	66, 164
SduI	GDGCHC	2 cut(s)	141, 179
SetI	ASST	6 cut(s)	51, 101, 126, 141, 162, 179
SmiMI	CAYNNNNRTG	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	2 cut(s)	141, 179
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	171
TaqI	TCGA	2 cut(s)	15, 102
TseI	GCWGC	1 cut(s)	146
XceI	RCATGY	1 cut(s)	14
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.