Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0016769

Physical Location & Seq

Genomic Coordinates Forward (+)

14040334 .. 14043986

Gene Structure 3653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022883

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTCAGAGTGTTCGCGGCATCTCTGTGGTACTTGGTGGTCTCTGACCATCGTTAGCTCTGTTGCGCACTGCTCATGGCGTATCTTAGATTTCAAGTCACCCAAATTCAGGAGAAGCATCTATAAACAAGAAAGAATGGCTAGGCATGTCGATGTTCAATGCTGGCCGGAGCAGAAGCCGAAGCTGGTTGAACTTCCGTGGAGCAAGGATCAAGTCCGCGAACTTTTGAAAAGCTTCAACAAGGATGGAGACGGCAAGCTCTCCAAGGAAGAGCTCCAAGGCAGCCTTCAAGAAGCTCGGATCACGGTGGAGATCTTTCAGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0016020 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

109

Amino Acids

12.69

Weight (kDa)

9.0

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016769)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34520
rosa_chinensis	RchiOBHm_Chr6g0307801
rosa_laevigata	RLG00000022883
rosa_multiflora	Rmu_sc0000031.1_g000034 Rmu_sc0001051.1_g000058 Rmu_sc0002790.1_g000009
rosa_rugosa	Rorug03G0244000 Rorug06G0361200 Rorug06G0483700
rosa_samantha	Rh3AG293700 Rh3BG278200 Rh5DG496800 Rh6BG480700 Rh7BG276400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	66
AccII	CGCG	2 cut(s)	16, 219
AciI	CCGC	2 cut(s)	16, 217
AclWI	GGATC	2 cut(s)	216, 308
AcoI	YGGCCR	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	104
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	6 cut(s)	94, 158, 191, 229, 238, 290
AjuI	GAANNNNNNNTTGG	2 cut(s)	270, 302
AluBI	AGCT	6 cut(s)	57, 184, 234, 259, 274, 296
AluI	AGCT	6 cut(s)	57, 184, 234, 259, 274, 296
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	2 cut(s)	45, 243
AlwI	GGATC	2 cut(s)	216, 308
AoxI	GGCC	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	282
ApoI	RAATTY	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	2 cut(s)	56, 239
BceAI	ACGGC	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	45, 243
BfaI	CTAG	1 cut(s)	141
BglII	AGATCT	1 cut(s)	312
BisI	GCNGC	2 cut(s)	17, 283
BlsI	GCNGC	2 cut(s)	18, 284
BmsI	GCATC	2 cut(s)	28, 126
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	3 cut(s)	197, 264, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
BseDI	CCNNGG	3 cut(s)	197, 264, 277
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	294
Bsh1236I	CGCG	2 cut(s)	16, 219
BshFI	GGCC	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	2 cut(s)	45, 243
BsmBI	CGTCTC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	166
Bso31I	GGTCTC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	3 cut(s)	208, 300, 312
BspACI	CCGC	2 cut(s)	16, 217
BspANI	GGCC	1 cut(s)	166
BspFNI	CGCG	2 cut(s)	16, 219
BspPI	GGATC	2 cut(s)	216, 308
BspQI	GCTCTTC	1 cut(s)	264
BspTNI	GGTCTC	1 cut(s)	45
BssECI	CCNNGG	3 cut(s)	197, 264, 277
BssMI	GATC	3 cut(s)	208, 300, 312
BssT1I	CCWWGG	2 cut(s)	264, 277
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	1 cut(s)	264
BstC8I	GCNNGC	2 cut(s)	164, 257
BstDEI	CTNAG	1 cut(s)	85
BstDSI	CCRYGG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	2 cut(s)	16, 219
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	3 cut(s)	211, 303, 315
BstMAI	GTCTC	2 cut(s)	45, 243
BstMBI	GATC	3 cut(s)	208, 300, 312
BstNSI	RCATGY	1 cut(s)	149
BstUI	CGCG	2 cut(s)	16, 219
BstV1I	GCAGC	1 cut(s)	294
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	166
BtgI	CCRYGG	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	67
Cac8I	GCNNGC	2 cut(s)	164, 257
CfoI	GCGC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	2 cut(s)	75, 146
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	1 cut(s)	85
DpnI	GATC	3 cut(s)	210, 302, 314
DpnII	GATC	3 cut(s)	208, 300, 312
EaeI	YGGCCR	1 cut(s)	164
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Ecl136II	GAGCTC	1 cut(s)	274
Eco130I	CCWWGG	2 cut(s)	264, 277
Eco24I	GRGCYC	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	45
Eco53kI	GAGCTC	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	274
EcoT14I	CCWWGG	2 cut(s)	264, 277
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	2 cut(s)	264, 277
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	2 cut(s)	78, 149
FaiI	YATR	3 cut(s)	76, 123, 147
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FatI	CATG	2 cut(s)	74, 145
Fnu4HI	GCNGC	2 cut(s)	17, 283
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	2 cut(s)	17, 283
FspBI	CTAG	1 cut(s)	141
FspI	TGCGCA	1 cut(s)	66
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	2 cut(s)	17, 283
HaeIII	GGCC	1 cut(s)	166
HapII	CCGG	1 cut(s)	167
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	78, 149
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HindIII	AAGCTT	1 cut(s)	232
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	90
Hpy188I	TCNGA	3 cut(s)	7, 45, 300
Hpy188III	TCNNGA	2 cut(s)	109, 290
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	1 cut(s)	307
HpyF3I	CTNAG	1 cut(s)	85
Hsp92II	CATG	2 cut(s)	78, 149
HspAI	GCGC	1 cut(s)	65
Kzo9I	GATC	3 cut(s)	208, 300, 312
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	3 cut(s)	169, 201, 279
LpnPI	CCDG	5 cut(s)	94, 148, 170, 180, 305
Lsp1109I	GCAGC	1 cut(s)	294
LweI	GCATC	2 cut(s)	28, 126
MaeI	CTAG	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	96
MalI	GATC	3 cut(s)	210, 302, 314
MboI	GATC	3 cut(s)	208, 300, 312
MboII	GAAGA	1 cut(s)	281
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	233
MslI	CAYNNNNRTG	2 cut(s)	24, 150
MspI	CCGG	1 cut(s)	167
MvnI	CGCG	2 cut(s)	16, 219
NdeII	GATC	3 cut(s)	208, 300, 312
NlaIII	CATG	2 cut(s)	78, 149
NmuCI	GTSAC	1 cut(s)	96
NsbI	TGCGCA	1 cut(s)	66
NspI	RCATGY	1 cut(s)	149
PciSI	GCTCTTC	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	18, 284
Psp124BI	GAGCTC	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	312
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
RseI	CAYNNNNRTG	2 cut(s)	24, 150
SacI	GAGCTC	1 cut(s)	276
SapI	GCTCTTC	1 cut(s)	264
SatI	GCNGC	2 cut(s)	17, 283
Sau3AI	GATC	3 cut(s)	208, 300, 312
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	6 cut(s)	59, 186, 236, 261, 276, 298
SfaNI	GCATC	2 cut(s)	28, 126
SmiMI	CAYNNNNRTG	2 cut(s)	24, 150
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	2 cut(s)	16, 217
SspMI	CTAG	1 cut(s)	141
SstI	GAGCTC	1 cut(s)	276
StyI	CCWWGG	2 cut(s)	264, 277
TaaI	ACNGT	1 cut(s)	307
TaqI	TCGA	1 cut(s)	150
TasI	AATT	1 cut(s)	104
TauI	GCSGC	1 cut(s)	19
TscAI	CASTG	1 cut(s)	74
TseFI	GTSAC	1 cut(s)	96
TseI	GCWGC	1 cut(s)	282
Tsp45I	GTSAC	1 cut(s)	96
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	74
XapI	RAATTY	1 cut(s)	104
XceI	RCATGY	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	233
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.