Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0016769

Physical Location & Seq

Genomic Coordinates Reverse (-)

25672513 .. 25674029

Gene Structure 1517 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG276400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGTCCTCCGATCCTGATTTCCCGCCGGCCCAATTCGTCACCGTCCACGAAGAAGACGAAGAAGACTTTGACTGCGAAGACGACATCTTTTCCCAGTACCATTCCACAATCCATGCCGAGCGGAATAGCGATGACGTCGTTACGGAGCCCAATTCCATTTCCAACACCAACGACTTGTCGTCGGACCGCGAGAACCAGGTCAATTTCGTTATGGATCGGTTCCAGCAGCGCGTCGAGCAGTCTCAGCCCCTTAAGCGGCAAGCTCGAAGATTTGGAAACTTAGAAGTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

97

Amino Acids

11.32

Weight (kDa)

4.24

Isoelectric Point (pI)

57.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016769)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34520
rosa_chinensis	RchiOBHm_Chr6g0307801
rosa_laevigata	RLG00000022883
rosa_multiflora	Rmu_sc0000031.1_g000034 Rmu_sc0001051.1_g000058 Rmu_sc0002790.1_g000009
rosa_rugosa	Rorug03G0244000 Rorug06G0361200 Rorug06G0483700
rosa_samantha	Rh3AG293700 Rh3BG278200 Rh5DG496800 Rh6BG480700 Rh7BG276400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	138
AccBSI	CCGCTC	1 cut(s)	121
AccII	CGCG	2 cut(s)	189, 231
AciI	CCGC	4 cut(s)	23, 121, 187, 256
AclWI	GGATC	2 cut(s)	5, 222
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	255
AflII	CTTAAG	1 cut(s)	251
AhdI	GACNNNNNGTC	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	5, 222
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	2 cut(s)	28, 184
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	3 cut(s)	60, 69, 84
BbvI	GCAGC	1 cut(s)	238
BciT130I	CCWGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	246
BfrI	CTTAAG	1 cut(s)	251
BisI	GCNGC	2 cut(s)	227, 257
BlsI	GCNGC	2 cut(s)	228, 258
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	184
BmeRI	GACNNNNNGTC	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	28, 184
BmiI	GGNNCC	2 cut(s)	147, 221
BmrFI	CCNGG	1 cut(s)	197
BmrI	ACTGGG	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	88
BpiI	GAAGAC	3 cut(s)	60, 69, 84
BsaHI	GRCGYC	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	197
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	238
Bsh1236I	CGCG	2 cut(s)	189, 231
BshFI	GGCC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	10, 214
BspACI	CCGC	4 cut(s)	23, 121, 187, 256
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	2 cut(s)	189, 231
BspLI	GGNNCC	2 cut(s)	147, 221
BspPI	GGATC	2 cut(s)	5, 222
BspTI	CTTAAG	1 cut(s)	251
BsrBI	CCGCTC	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	25
BssMI	GATC	2 cut(s)	10, 214
BssNI	GRCGYC	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	43
BstACI	GRCGYC	1 cut(s)	135
BstAFI	CTTAAG	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	27, 261
BstDEI	CTNAG	2 cut(s)	243, 280
BstFNI	CGCG	2 cut(s)	189, 231
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	2 cut(s)	13, 217
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	2 cut(s)	10, 214
BstMWI	GCNNNNNNNGC	3 cut(s)	235, 244, 253
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	195
BstUI	CGCG	2 cut(s)	189, 231
BstV1I	GCAGC	1 cut(s)	238
BstV2I	GAAGAC	3 cut(s)	60, 69, 84
BsuRI	GGCC	1 cut(s)	29
BtgZI	GCGATG	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	27, 261
CfoI	GCGC	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	28, 184
CpoI	CGGWCCG	1 cut(s)	184
CseI	GACGC	1 cut(s)	220
CsiI	ACCWGGT	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	97
CspI	CGGWCCG	1 cut(s)	184
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	4 cut(s)	29, 148, 247, 263
CviKI_1	RGCY	4 cut(s)	29, 148, 247, 263
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	2 cut(s)	243, 280
DpnI	GATC	2 cut(s)	12, 216
DpnII	GATC	2 cut(s)	10, 214
DriI	GACNNNNNGTC	1 cut(s)	178
Eam1105I	GACNNNNNGTC	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	150
FaeI	CATG	1 cut(s)	116
FaiI	YATR	2 cut(s)	114, 212
FatI	CATG	1 cut(s)	112
FauI	CCCGC	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	227, 257
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	227, 257
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	2 cut(s)	227, 257
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	26
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	231
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	116
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	10, 184
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	3 cut(s)	140, 184, 236
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	3 cut(s)	235, 244, 253
HpyF3I	CTNAG	2 cut(s)	243, 280
HpySE526I	ACGT	1 cut(s)	135
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	1 cut(s)	116
HspAI	GCGC	1 cut(s)	229
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Kzo9I	GATC	2 cut(s)	10, 214
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	6 cut(s)	27, 39, 107, 182, 209, 236
Lsp1109I	GCAGC	1 cut(s)	238
MabI	ACCWGGT	1 cut(s)	195
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	2 cut(s)	37, 139
MalI	GATC	2 cut(s)	12, 216
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	2 cut(s)	10, 214
MboII	GAAGA	6 cut(s)	62, 65, 71, 74, 89, 279
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	4 cut(s)	32, 151, 202, 289
MmeI	TCCRAC	2 cut(s)	162, 186
MnlI	CCTC	1 cut(s)	16
MroNI	GCCGGC	1 cut(s)	25
MseI	TTAA	2 cut(s)	252, 292
MspCI	CTTAAG	1 cut(s)	251
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	197
MvnI	CGCG	2 cut(s)	189, 231
MwoI	GCNNNNNNNGC	3 cut(s)	235, 244, 253
NaeI	GCCGGC	1 cut(s)	27
NdeII	GATC	2 cut(s)	10, 214
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	2 cut(s)	147, 221
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdiI	GCCGGC	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	228, 258
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	147, 221
PspPI	GGNCC	2 cut(s)	28, 184
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
Rsr2I	CGGWCCG	1 cut(s)	184
RsrII	CGGWCCG	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	252, 292
SatI	GCNGC	2 cut(s)	227, 257
Sau3AI	GATC	2 cut(s)	10, 214
Sau96I	GGNCC	2 cut(s)	28, 184
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	3 cut(s)	138, 201, 265
SexAI	ACCWGGT	1 cut(s)	195
SinI	GGWCC	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	4 cut(s)	32, 151, 202, 289
SsiI	CCGC	4 cut(s)	23, 121, 187, 256
StyD4I	CCNGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	2 cut(s)	234, 265
TasI	AATT	4 cut(s)	32, 151, 202, 289
TauI	GCSGC	1 cut(s)	259
Tru1I	TTAA	2 cut(s)	252, 292
Tru9I	TTAA	2 cut(s)	252, 292
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	37
TspGWI	ACGGA	1 cut(s)	158
Vha464I	CTTAAG	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	184
ZraI	GACGTC	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.