Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000031.1

Orthogroup ID

OG0016769

Physical Location & Seq

Genomic Coordinates Reverse (-)

178960 .. 181405

Gene Structure 2446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000031.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgactaggcatgtcgattggccggagcagaagtcgaagttggtcccacttccgtggagcaaggagcaggtccgcgaacttttcaaaagcttcgacaaggacggagacggcaagctctccaaggaagagctcaaggcagcctttagaaaacttggatcgcggtggagctctttcagggctaggagagcattacgctatgtagattccaacgacgacggccagatttcaaaagaggagttcaatgatctcgtcaactatgcgctagaatgtggacaaccatataaacaagccttcgaatccctcctctactggtcctccaacgacttcgacctctacatctcctccgatcctgatttcccgccggcccagttcgtcaccgtccacgaagaagacgacgaagactttgacggcaaagacgacatcctttcccagtaccagtccacaattcacgccgagcaaaaccgcgacgacatcgtttcggagcccaattccatttccaacaccgacgacttgttgtcggaccgcgagaaccaagtcaatttcgtcatggatctattccagcagtgcgtcgagcagtctcaggtaacggcccgttccgttttggtctccggcgactctaattttggagttgtagggttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

213

Amino Acids

24.53

Weight (kDa)

4.46

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016769)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34520
rosa_chinensis	RchiOBHm_Chr6g0307801
rosa_laevigata	RLG00000022883
rosa_multiflora	Rmu_sc0000031.1_g000034 Rmu_sc0001051.1_g000058 Rmu_sc0002790.1_g000009
rosa_rugosa	Rorug03G0244000 Rorug06G0361200 Rorug06G0483700
rosa_samantha	Rh3AG293700 Rh3BG278200 Rh5DG496800 Rh6BG480700 Rh7BG276400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	58
AccII	CGCG	4 cut(s)	75, 160, 465, 525
AciI	CCGC	5 cut(s)	73, 160, 359, 463, 523
AclWI	GGATC	3 cut(s)	163, 341, 558
AcoI	YGGCCR	2 cut(s)	20, 217
AfaI	GTAC	1 cut(s)	434
AgsI	TTSAA	3 cut(s)	85, 228, 241
AhdI	GACNNNNNGTC	1 cut(s)	514
AjuI	GAANNNNNNNTTGG	2 cut(s)	23, 55
AleI	CACNNNNGTG	1 cut(s)	52
AluBI	AGCT	4 cut(s)	90, 115, 130, 168
AluI	AGCT	4 cut(s)	90, 115, 130, 168
Alw21I	GWGCWC	2 cut(s)	132, 170
Alw26I	GTCTC	3 cut(s)	99, 582, 610
AlwI	GGATC	3 cut(s)	163, 341, 558
AoxI	GGCC	4 cut(s)	20, 217, 363, 588
ApeKI	GCWGC	1 cut(s)	137
ArsI	GACNNNNNNTTYG	4 cut(s)	386, 418, 605, 637
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	6 cut(s)	43, 70, 312, 364, 520, 589
AsuHPI	GGTGA	1 cut(s)	367
AsuII	TTCGAA	1 cut(s)	294
AvaII	GGWCC	4 cut(s)	43, 70, 312, 520
BanII	GRGCYC	3 cut(s)	132, 170, 486
BbsI	GAAGAC	2 cut(s)	396, 405
Bbv12I	GWGCWC	2 cut(s)	132, 170
BbvI	GCAGC	1 cut(s)	149
BceAI	ACGGC	4 cut(s)	124, 232, 424, 603
BcoDI	GTCTC	3 cut(s)	99, 582, 610
BfaI	CTAG	3 cut(s)	6, 180, 263
BfuAI	ACCTGC	1 cut(s)	58
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme18I	GGWCC	4 cut(s)	43, 70, 312, 520
BmeRI	GACNNNNNGTC	1 cut(s)	514
BmgT120I	GGNCC	6 cut(s)	43, 70, 312, 364, 520, 589
BmiI	GGNNCC	2 cut(s)	45, 483
BmrI	ACTGGG	2 cut(s)	361, 424
BmuI	ACTGGG	2 cut(s)	361, 424
BpiI	GAAGAC	2 cut(s)	396, 405
Bpu14I	TTCGAA	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	610
BsaJI	CCNNGG	2 cut(s)	53, 120
BsaXI	ACNNNNNCTCC	6 cut(s)	17, 47, 299, 326, 329, 356
Bse118I	RCCGGY	1 cut(s)	361
Bse1I	ACTGG	4 cut(s)	314, 367, 430, 436
BseDI	CCNNGG	2 cut(s)	53, 120
BseGI	GGATG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	593
BseNI	ACTGG	4 cut(s)	314, 367, 430, 436
BseRI	GAGGAG	3 cut(s)	248, 293, 331
BseXI	GCAGC	1 cut(s)	149
Bsh1236I	CGCG	4 cut(s)	75, 160, 465, 525
BshFI	GGCC	4 cut(s)	22, 219, 365, 590
BsiHKAI	GWGCWC	2 cut(s)	132, 170
BsiSI	CCGG	3 cut(s)	23, 362, 609
BslFI	GGGAC	1 cut(s)	29
BsmAI	GTCTC	3 cut(s)	99, 582, 610
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	4 cut(s)	22, 219, 365, 590
Bso31I	GGTCTC	1 cut(s)	610
Bsp119I	TTCGAA	1 cut(s)	294
Bsp1286I	GDGCHC	3 cut(s)	132, 170, 486
Bsp143I	GATC	4 cut(s)	155, 244, 346, 550
BspACI	CCGC	5 cut(s)	73, 160, 359, 463, 523
BspANI	GGCC	4 cut(s)	22, 219, 365, 590
BspCNI	CTCAG	1 cut(s)	592
BspFNI	CGCG	4 cut(s)	75, 160, 465, 525
BspLI	GGNNCC	2 cut(s)	45, 483
BspMI	ACCTGC	1 cut(s)	58
BspPI	GGATC	3 cut(s)	163, 341, 558
BspQI	GCTCTTC	1 cut(s)	120
BspT104I	TTCGAA	1 cut(s)	294
BspTNI	GGTCTC	1 cut(s)	610
BsrFI	RCCGGY	1 cut(s)	361
BsrI	ACTGG	4 cut(s)	314, 367, 430, 436
BssAI	RCCGGY	1 cut(s)	361
BssECI	CCNNGG	2 cut(s)	53, 120
BssMI	GATC	4 cut(s)	155, 244, 346, 550
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	1 cut(s)	120
BstBI	TTCGAA	1 cut(s)	294
BstC8I	GCNNGC	2 cut(s)	113, 363
BstDEI	CTNAG	1 cut(s)	579
BstDSI	CCRYGG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	420
BstFNI	CGCG	4 cut(s)	75, 160, 465, 525
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	4 cut(s)	158, 247, 349, 553
BstMAI	GTCTC	3 cut(s)	99, 582, 610
BstMBI	GATC	4 cut(s)	155, 244, 346, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNSI	RCATGY	1 cut(s)	14
BstUI	CGCG	4 cut(s)	75, 160, 465, 525
BstV1I	GCAGC	1 cut(s)	149
BstV2I	GAAGAC	2 cut(s)	396, 405
BstX2I	RGATCY	1 cut(s)	550
BstXI	CCANNNNNNTGG	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	550
BsuRI	GGCC	4 cut(s)	22, 219, 365, 590
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	420
BtsI	GCAGTG	1 cut(s)	569
BtsIMutI	CAGTG	1 cut(s)	569
BveI	ACCTGC	1 cut(s)	58
Cac8I	GCNNGC	2 cut(s)	113, 363
CfoI	GCGC	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	361
Cfr13I	GGNCC	6 cut(s)	43, 70, 312, 364, 520, 589
CpoI	CGGWCCG	1 cut(s)	520
CseI	GACGC	1 cut(s)	556
Csp6I	GTAC	1 cut(s)	433
CspI	CGGWCCG	1 cut(s)	520
CviAII	CATG	2 cut(s)	11, 547
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	1 cut(s)	579
DpnI	GATC	4 cut(s)	157, 246, 348, 552
DpnII	GATC	4 cut(s)	155, 244, 346, 550
DriI	GACNNNNNGTC	1 cut(s)	514
EaeI	YGGCCR	2 cut(s)	20, 217
Eam1104I	CTCTTC	1 cut(s)	120
Eam1105I	GACNNNNNGTC	1 cut(s)	514
EarI	CTCTTC	1 cut(s)	120
Ecl136II	GAGCTC	2 cut(s)	130, 168
Eco130I	CCWWGG	1 cut(s)	120
Eco24I	GRGCYC	3 cut(s)	132, 170, 486
Eco31I	GGTCTC	1 cut(s)	610
Eco47I	GGWCC	4 cut(s)	43, 70, 312, 520
Eco53kI	GAGCTC	2 cut(s)	130, 168
EcoICRI	GAGCTC	2 cut(s)	130, 168
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	3 cut(s)	132, 170, 486
ErhI	CCWWGG	1 cut(s)	120
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	2 cut(s)	14, 550
FaiI	YATR	6 cut(s)	12, 198, 258, 280, 282, 548
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	2 cut(s)	10, 546
FauI	CCCGC	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	407
FriOI	GRGCYC	3 cut(s)	132, 170, 486
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	3 cut(s)	6, 180, 263
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	1 cut(s)	138
HaeIII	GGCC	4 cut(s)	22, 219, 365, 590
HapII	CCGG	3 cut(s)	23, 362, 609
HgaI	GACGC	1 cut(s)	556
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	2 cut(s)	14, 550
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	88
HinfI	GANTC	3 cut(s)	203, 296, 614
HpaII	CCGG	3 cut(s)	23, 362, 609
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	4 cut(s)	253, 272, 382, 441
Hpy188I	TCNGA	4 cut(s)	346, 481, 520, 641
Hpy188III	TCNNGA	1 cut(s)	350
Hpy8I	GTNNAC	4 cut(s)	253, 272, 382, 441
Hpy99I	CGWCG	6 cut(s)	215, 218, 398, 470, 509, 572
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	1 cut(s)	579
Hsp92II	CATG	2 cut(s)	14, 550
HspAI	GCGC	1 cut(s)	260
KroI	GCCGGC	1 cut(s)	361
KroNI	GCCGGC	1 cut(s)	363
Kzo9I	GATC	4 cut(s)	155, 244, 346, 550
LguI	GCTCTTC	1 cut(s)	120
LmnI	GCTCC	5 cut(s)	25, 57, 64, 165, 481
Lsp1109I	GCAGC	1 cut(s)	149
MaeI	CTAG	3 cut(s)	6, 180, 263
MaeIII	GTNAC	2 cut(s)	373, 583
MalI	GATC	4 cut(s)	157, 246, 348, 552
MboI	GATC	4 cut(s)	155, 244, 346, 550
MboII	GAAGA	4 cut(s)	137, 398, 401, 410
MflI	RGATCY	1 cut(s)	550
MhlI	GDGCHC	3 cut(s)	132, 170, 486
MluCI	AATT	4 cut(s)	444, 487, 538, 619
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	4 cut(s)	231, 342, 498, 522
MnlI	CCTC	6 cut(s)	226, 311, 314, 325, 341, 352
MroNI	GCCGGC	1 cut(s)	361
MslI	CAYNNNNRTG	1 cut(s)	52
MspI	CCGG	3 cut(s)	23, 362, 609
MvnI	CGCG	4 cut(s)	75, 160, 465, 525
MwoI	GCNNNNNNNGC	1 cut(s)	185
NaeI	GCCGGC	1 cut(s)	363
NdeII	GATC	4 cut(s)	155, 244, 346, 550
NgoMIV	GCCGGC	1 cut(s)	361
NlaIII	CATG	2 cut(s)	14, 550
NlaIV	GGNNCC	2 cut(s)	45, 483
NmeAIII	GCCGAG	1 cut(s)	478
NmuCI	GTSAC	1 cut(s)	373
NspI	RCATGY	1 cut(s)	14
NspV	TTCGAA	1 cut(s)	294
OliI	CACNNNNGTG	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	2 cut(s)	390, 414
PdiI	GCCGGC	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	203, 296
PkrI	GCNGC	1 cut(s)	139
PleI	GAGTC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	608
Psp124BI	GAGCTC	2 cut(s)	132, 170
PspN4I	GGNNCC	2 cut(s)	45, 483
PspPI	GGNCC	6 cut(s)	43, 70, 312, 364, 520, 589
PsuI	RGATCY	1 cut(s)	550
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	52
Rsr2I	CGGWCCG	1 cut(s)	520
RsrII	CGGWCCG	1 cut(s)	520
SacI	GAGCTC	2 cut(s)	132, 170
SapI	GCTCTTC	1 cut(s)	120
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	4 cut(s)	155, 244, 346, 550
Sau96I	GGNCC	6 cut(s)	43, 70, 312, 364, 520, 589
SchI	GAGTC	1 cut(s)	608
SduI	GDGCHC	3 cut(s)	132, 170, 486
SetI	ASST	7 cut(s)	72, 92, 117, 132, 170, 333, 585
SfuI	TTCGAA	1 cut(s)	294
SinI	GGWCC	4 cut(s)	43, 70, 312, 520
SmiMI	CAYNNNNRTG	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	4 cut(s)	444, 487, 538, 619
SsiI	CCGC	5 cut(s)	73, 160, 359, 463, 523
SspMI	CTAG	3 cut(s)	6, 180, 263
SstI	GAGCTC	2 cut(s)	132, 170
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	379
TaqI	TCGA	6 cut(s)	15, 35, 93, 294, 327, 570
TasI	AATT	4 cut(s)	444, 487, 538, 619
TfiI	GAWTC	2 cut(s)	203, 296
TscAI	CASTG	1 cut(s)	569
TseFI	GTSAC	1 cut(s)	373
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	373
TspGWI	ACGGA	3 cut(s)	42, 117, 586
TspRI	CASTG	1 cut(s)	569
VpaK11BI	GGWCC	4 cut(s)	43, 70, 312, 520
XceI	RCATGY	1 cut(s)	14
XspI	CTAG	3 cut(s)	6, 180, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.