Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001051.1

Orthogroup ID

OG0016769

Physical Location & Seq

Genomic Coordinates Forward (+)

205706 .. 206290

Gene Structure 585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001051.1_g000058.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgctcttctatctctcctctctctccggcacgagcaacacactccctctctctctctctttctctctctctcctcaccctcgccgacgaggacaaccatataaacaagccttcaaatccctccccaattggtcctccaactacttcgacctctacatgtcctccgatcctaatttcccgctggcccagtttgtcaccgtccacgaagaagactacgaagactttgattgcgaagacgacatcttttcccagtaccattccacaatccacgccgagaggaaccgcgatgacgtcgtttcggagcccaattccatttccaacaccgacgacttgtcgtcggaccgagagaaccaggtcaatttcgtcatggatctgttccagcagcgcattgagcagtctcaggtaacggcccgttccgttttggtctccggcgactctgatttgggggttgtggaggggaattgcgacatggaggctctgggttcgagctcccggagaacgttagcgacatcatccacgatctttgcctcgttggaagactacttcctgtcccgggtctgcagtcggacagatgggagaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

194

Amino Acids

21.99

Weight (kDa)

4.56

Isoelectric Point (pI)

59.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016769)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34520
rosa_chinensis	RchiOBHm_Chr6g0307801
rosa_laevigata	RLG00000022883
rosa_multiflora	Rmu_sc0000031.1_g000034 Rmu_sc0001051.1_g000058 Rmu_sc0002790.1_g000009
rosa_rugosa	Rorug03G0244000 Rorug06G0361200 Rorug06G0483700
rosa_samantha	Rh3AG293700 Rh3BG278200 Rh5DG496800 Rh6BG480700 Rh7BG276400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	294
AccII	CGCG	1 cut(s)	285
AciI	CCGC	2 cut(s)	179, 283
AclI	AACGTT	1 cut(s)	500
AclWI	GGATC	2 cut(s)	161, 378
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	553
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	1 cut(s)	115
AhdI	GACNNNNNGTC	2 cut(s)	331, 334
AjnI	CCWGG	1 cut(s)	351
AluBI	AGCT	1 cut(s)	489
AluI	AGCT	1 cut(s)	489
Alw21I	GWGCWC	1 cut(s)	491
Alw26I	GTCTC	2 cut(s)	402, 430
AlwI	GGATC	2 cut(s)	161, 378
Ama87I	CYCGRG	1 cut(s)	552
AoxI	GGCC	2 cut(s)	183, 408
ApeKI	GCWGC	1 cut(s)	382
AspLEI	GCGC	1 cut(s)	387
AspS9I	GGNCC	4 cut(s)	132, 184, 340, 409
AsuC2I	CCSGG	3 cut(s)	493, 553, 554
AsuHPI	GGTGA	2 cut(s)	68, 187
AvaI	CYCGRG	1 cut(s)	552
AvaII	GGWCC	2 cut(s)	132, 340
BanII	GRGCYC	2 cut(s)	306, 491
BauI	CACGAG	1 cut(s)	31
BbsI	GAAGAC	4 cut(s)	216, 225, 240, 543
Bbv12I	GWGCWC	1 cut(s)	491
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	1 cut(s)	566
BceAI	ACGGC	1 cut(s)	423
BciT130I	CCWGG	1 cut(s)	353
BcnI	CCSGG	3 cut(s)	493, 553, 554
BcoDI	GTCTC	2 cut(s)	402, 430
BfmI	CTRYAG	1 cut(s)	559
BisI	GCNGC	1 cut(s)	383
BlsI	GCNGC	1 cut(s)	384
Bme1390I	CCNGG	4 cut(s)	353, 493, 553, 554
Bme18I	GGWCC	2 cut(s)	132, 340
BmeRI	GACNNNNNGTC	2 cut(s)	331, 334
BmeT110I	CYCGRG	1 cut(s)	552
BmgT120I	GGNCC	4 cut(s)	132, 184, 340, 409
BmiI	GGNNCC	2 cut(s)	281, 303
BmrFI	CCNGG	4 cut(s)	353, 493, 553, 554
BmrI	ACTGGG	2 cut(s)	181, 244
BmuI	ACTGGG	2 cut(s)	181, 244
BpiI	GAAGAC	4 cut(s)	216, 225, 240, 543
BpuMI	CCSGG	3 cut(s)	493, 553, 554
BsaHI	GRCGYC	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	430
BsaJI	CCNNGG	1 cut(s)	552
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse1I	ACTGG	2 cut(s)	187, 250
BseBI	CCWGG	1 cut(s)	353
BseDI	CCNNGG	1 cut(s)	552
BseGI	GGATG	1 cut(s)	512
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	2 cut(s)	187, 250
BseRI	GAGGAG	2 cut(s)	7, 63
BseXI	GCAGC	1 cut(s)	394
Bsh1236I	CGCG	1 cut(s)	285
BshFI	GGCC	2 cut(s)	185, 410
BsiHKAI	GWGCWC	1 cut(s)	491
BsiHKCI	CYCGRG	1 cut(s)	552
BsiSI	CCGG	4 cut(s)	27, 429, 493, 553
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	1 cut(s)	553
BsmAI	GTCTC	2 cut(s)	402, 430
BsmFI	GGGAC	1 cut(s)	535
BsnI	GGCC	2 cut(s)	185, 410
Bso31I	GGTCTC	1 cut(s)	430
BsoBI	CYCGRG	1 cut(s)	552
Bsp1286I	GDGCHC	2 cut(s)	306, 491
Bsp143I	GATC	3 cut(s)	166, 370, 519
BspACI	CCGC	2 cut(s)	179, 283
BspANI	GGCC	2 cut(s)	185, 410
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	281, 303
BspMAI	CTGCAG	1 cut(s)	563
BspPI	GGATC	2 cut(s)	161, 378
BspQI	GCTCTTC	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	430
BsrI	ACTGG	2 cut(s)	187, 250
BssECI	CCNNGG	1 cut(s)	552
BssMI	GATC	3 cut(s)	166, 370, 519
BssNI	GRCGYC	1 cut(s)	291
BssSI	CACGAG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	353
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	11
BstACI	GRCGYC	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	512
BstFNI	CGCG	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	3 cut(s)	169, 373, 522
BstMAI	GTCTC	2 cut(s)	402, 430
BstMBI	GATC	3 cut(s)	166, 370, 519
BstMWI	GCNNNNNNNGC	1 cut(s)	391
BstNI	CCWGG	1 cut(s)	353
BstNSI	RCATGY	1 cut(s)	160
BstSCI	CCNGG	4 cut(s)	351, 491, 551, 552
BstSFI	CTRYAG	1 cut(s)	559
BstUI	CGCG	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	394
BstV2I	GAAGAC	4 cut(s)	216, 225, 240, 543
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	185, 410
BtgZI	GCGATG	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	512
Cac8I	GCNNGC	1 cut(s)	183
CfoI	GCGC	1 cut(s)	387
Cfr13I	GGNCC	4 cut(s)	132, 184, 340, 409
Cfr9I	CCCGGG	1 cut(s)	552
CpoI	CGGWCCG	1 cut(s)	340
CsiI	ACCWGGT	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	253
CspCI	CAANNNNNGTGG	2 cut(s)	505, 540
CspI	CGGWCCG	1 cut(s)	340
CviAII	CATG	3 cut(s)	157, 367, 469
CviJI	RGCY	6 cut(s)	110, 185, 304, 410, 476, 489
CviKI_1	RGCY	6 cut(s)	110, 185, 304, 410, 476, 489
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	3 cut(s)	168, 372, 521
DpnII	GATC	3 cut(s)	166, 370, 519
DriI	GACNNNNNGTC	2 cut(s)	331, 334
Eam1104I	CTCTTC	1 cut(s)	11
Eam1105I	GACNNNNNGTC	2 cut(s)	331, 334
EarI	CTCTTC	1 cut(s)	11
Ecl136II	GAGCTC	1 cut(s)	489
Eco24I	GRGCYC	2 cut(s)	306, 491
Eco31I	GGTCTC	1 cut(s)	430
Eco47I	GGWCC	2 cut(s)	132, 340
Eco53kI	GAGCTC	1 cut(s)	489
Eco88I	CYCGRG	1 cut(s)	552
EcoICRI	GAGCTC	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	351
EcoT38I	GRGCYC	2 cut(s)	306, 491
FaeI	CATG	3 cut(s)	160, 370, 472
FaiI	YATR	5 cut(s)	100, 102, 158, 368, 470
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	3 cut(s)	156, 366, 468
FauI	CCCGC	1 cut(s)	186
Fnu4HI	GCNGC	1 cut(s)	383
FokI	GGATG	1 cut(s)	499
FriOI	GRGCYC	2 cut(s)	306, 491
Fsp4HI	GCNGC	1 cut(s)	383
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	1 cut(s)	383
HaeIII	GGCC	2 cut(s)	185, 410
HapII	CCGG	4 cut(s)	27, 429, 493, 553
HhaI	GCGC	1 cut(s)	387
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	3 cut(s)	160, 370, 472
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HinfI	GANTC	1 cut(s)	434
HpaII	CCGG	4 cut(s)	27, 429, 493, 553
HphI	GGTGA	2 cut(s)	68, 187
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	5 cut(s)	166, 301, 340, 439, 567
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	4 cut(s)	90, 296, 329, 340
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	2 cut(s)	291, 500
HpyCH4V	TGCA	1 cut(s)	561
HpyF10VI	GCNNNNNNNGC	1 cut(s)	391
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	2 cut(s)	291, 500
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	3 cut(s)	160, 370, 472
HspAI	GCGC	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	166, 370, 519
LguI	GCTCTTC	1 cut(s)	11
LmnI	GCTCC	2 cut(s)	301, 494
Lsp1109I	GCAGC	1 cut(s)	394
MabI	ACCWGGT	1 cut(s)	351
MaeII	ACGT	2 cut(s)	291, 500
MaeIII	GTNAC	2 cut(s)	193, 403
MalI	GATC	3 cut(s)	168, 372, 521
MboI	GATC	3 cut(s)	166, 370, 519
MboII	GAAGA	5 cut(s)	218, 221, 230, 245, 548
MfeI	CAATTG	1 cut(s)	127
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	2 cut(s)	306, 491
MluCI	AATT	5 cut(s)	127, 172, 307, 358, 460
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	5 cut(s)	162, 318, 342, 513, 545
MspA1I	CMGCKG	1 cut(s)	181
MspI	CCGG	4 cut(s)	27, 429, 493, 553
MspR9I	CCNGG	4 cut(s)	353, 493, 553, 554
MunI	CAATTG	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	353
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	391
NciI	CCSGG	3 cut(s)	493, 553, 554
NdeII	GATC	3 cut(s)	166, 370, 519
NlaIII	CATG	3 cut(s)	160, 370, 472
NlaIV	GGNNCC	2 cut(s)	281, 303
NmeAIII	GCCGAG	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	1 cut(s)	160
PciI	ACATGT	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	491
PkrI	GCNGC	1 cut(s)	384
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
PscI	ACATGT	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	491
Psp1406I	AACGTT	1 cut(s)	500
Psp6I	CCWGG	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	351
PspN4I	GGNNCC	2 cut(s)	281, 303
PspPI	GGNCC	4 cut(s)	132, 184, 340, 409
PstI	CTGCAG	1 cut(s)	563
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
Rsr2I	CGGWCCG	1 cut(s)	340
RsrII	CGGWCCG	1 cut(s)	340
SacI	GAGCTC	1 cut(s)	491
SapI	GCTCTTC	1 cut(s)	11
SatI	GCNGC	1 cut(s)	383
Sau3AI	GATC	3 cut(s)	166, 370, 519
Sau96I	GGNCC	4 cut(s)	132, 184, 340, 409
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	4 cut(s)	353, 493, 553, 554
SduI	GDGCHC	2 cut(s)	306, 491
SetI	ASST	6 cut(s)	153, 294, 357, 405, 491, 503
SexAI	ACCWGGT	1 cut(s)	351
SfcI	CTRYAG	1 cut(s)	559
SinI	GGWCC	2 cut(s)	132, 340
SmaI	CCCGGG	1 cut(s)	554
Sse9I	AATT	5 cut(s)	127, 172, 307, 358, 460
SsiI	CCGC	2 cut(s)	179, 283
SstI	GAGCTC	1 cut(s)	491
StyD4I	CCNGG	4 cut(s)	351, 491, 551, 552
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	2 cut(s)	294, 503
TaqI	TCGA	2 cut(s)	147, 485
TaqII	GACCGA	1 cut(s)	357
TasI	AATT	5 cut(s)	127, 172, 307, 358, 460
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	193
TspGWI	ACGGA	1 cut(s)	406
TspMI	CCCGGG	1 cut(s)	552
VpaK11BI	GGWCC	2 cut(s)	132, 340
XceI	RCATGY	1 cut(s)	160
XmaI	CCCGGG	1 cut(s)	552
ZraI	GACGTC	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.