Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004952

Physical Location & Seq

Genomic Coordinates Forward (+)

26604015 .. 26607584

Gene Structure 3570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g36300.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGACGGCGGTGGGAATAGACGCTAGGATGCTAAAGCGAATCAGGAAAAGACCTCGATCGGCCTGGGACGTCGGCCCCTCGGAGCACGAACCAGAGGCGCAACGGCCATTATTGGCGGGTAATCAAGCGAATGGAAGAAACGGATCGCCTCCGAAACGAGACGATGATCGTGAAGGCCATTATGTTTACAATCTCGGCGAGAATCTCACTCCAAGATATAAAATACTAAACAAGATGGGTGAAGGCACATTTGGTCGAGTTTTGGAGTGTTGGGATCGTCAAACGCGAGAGTATGTGGCCATCAAGGTTGTGAGGAGCATACGGAAGTATCGGGATGCGGCAATGATTGAGGTGGATGTGCTTAATCACATTGCCAAGAATGACAATGGCAACTCACGCTGTGTGCAGATTCGCGATTGGTTTGATTACCGCAATCACATATGCATAGTGTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGATTTACGCTTAATCCACACTGACCTGAAGCCAGAAAATATTCTTCTTGTGTCTTCTGAATATGTAAAGCTTCCTGGGTTTAAGAGGTTTTCTTCAGATGAAATGCAATACAGGTGCTTGCCCAAGTCTAGTGCAATTAAGCTGATTGATTTCGGTAGTACTGTGTTTGAAAATCAGAATCATAGCTCCATTGTTTCCACAAGGCATTACAGAGCCCCTGAGATTATTCTAGGTCTAGGATGGAATTATCCATGTGATCTGTGGAGCGTAGGTTGCATCCTTGTTGAACTTTGTGCGGGTGAAGCATTGTTTCAAACACATGAAAACTTGGAGCATTTAGCAATGATGGAGAGGGTGTTGGGACCTCTGCCCCAGCATATGACTCAACGGGCTAGTCATGGTGCTGAAAAGTATTTTAGGCGGGGTGCAAGGCTGAATTGGCCTTTAGGAGCAGTGTCACGGGAGAGTATAAGAGCCGTAAAGAAGCTTGATAGTTTGAAGGAGATGGTTTCACGACATGTAGGGCCCTCTAAATTCAGTTCGGCCCTCACTGATTTGTTGTATGGTCTGTTGAATTATGATCCATCTGAGCGTCTCACCGCTCGACAAGCACTTGCTCATCCCTTCTTTAAGATTACACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

405

Amino Acids

46.46

Weight (kDa)

9.27

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	11 - 329	9.1e-49	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	11 - 237	3.7e-14	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36627 AT4G32660 AT4G32660 AT4G32660 AT4G32660
fragaria_vesca	FvH4_2g36300 FvH4_2g36300 FvH4_2g36300 FvH4_2g36300
malus_domestica	MD15G1099600.v1.1
prunus_persica	Prupe.1G454400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0305581
rosa_laevigata	RLG00000010875
rosa_multiflora	Rmu_co8396459.1_g000001 Rmu_sc0001153.1_g000003 Rmu_sc0001809.1_g000008 Rmu_sc0040964.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291350 Rroxscaffold_4G00291890 Rroxscaffold_7G00162560
rosa_rugosa	Rorug06G0341900
rosa_samantha	Rh1BG043700 Rh2AG235500 Rh2DG242800 Rh6AG453900 Rh6BG447600 Rh6CG467600 Rh6DG454200 Rh7AG230900
rosa_wichuraiana	Rw6G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	72
AccBSI	CCGCTC	1 cut(s)	1172
AccII	CGCG	2 cut(s)	286, 414
AciI	CCGC	7 cut(s)	8, 116, 338, 430, 866, 991, 1170
AclWI	GGATC	4 cut(s)	151, 282, 525, 1145
AcoI	YGGCCR	2 cut(s)	104, 297
AcsI	RAATTY	2 cut(s)	530, 1103
AcuI	CTGAAG	2 cut(s)	617, 648
AcyI	GRCGYC	1 cut(s)	69
AdeI	CACNNNGTG	1 cut(s)	401
AfaI	GTAC	1 cut(s)	730
AflIII	ACRYGT	1 cut(s)	1087
AgsI	TTSAA	5 cut(s)	740, 857, 884, 1069, 1144
AjnI	CCWGG	2 cut(s)	62, 643
AjuI	GAANNNNNNNTTGG	2 cut(s)	234, 266
AluBI	AGCT	7 cut(s)	460, 471, 544, 640, 712, 756, 1057
AluI	AGCT	7 cut(s)	460, 471, 544, 640, 712, 756, 1057
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	2 cut(s)	153, 1169
AlwI	GGATC	4 cut(s)	151, 282, 525, 1145
AoxI	GGCC	8 cut(s)	60, 73, 104, 175, 297, 1010, 1094, 1113
ApaI	GGGCCC	1 cut(s)	1098
ApoI	RAATTY	2 cut(s)	530, 1103
Asp700I	GAANNNNTTC	1 cut(s)	609
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	6 cut(s)	74, 464, 932, 1094, 1095, 1114
AsuHPI	GGTGA	3 cut(s)	251, 881, 1159
AvaII	GGWCC	2 cut(s)	464, 932
BaeGI	GKGCMC	1 cut(s)	1098
BaeI	ACNNNNGTAYC	2 cut(s)	311, 344
BalI	TGGCCA	1 cut(s)	299
BanII	GRGCYC	2 cut(s)	787, 1098
BbsI	GAAGAC	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	87
BccI	CCATC	6 cut(s)	229, 308, 804, 910, 1069, 1162
BceAI	ACGGC	3 cut(s)	21, 119, 1031
BciT130I	CCWGG	2 cut(s)	64, 645
BcoDI	GTCTC	2 cut(s)	153, 1169
BfaI	CTAG	5 cut(s)	24, 699, 800, 806, 963
BfmI	CTRYAG	1 cut(s)	555
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
BmcAI	AGTACT	1 cut(s)	730
Bme1390I	CCNGG	2 cut(s)	64, 645
Bme18I	GGWCC	2 cut(s)	464, 932
BmgT120I	GGNCC	6 cut(s)	74, 464, 932, 1094, 1095, 1114
BmiI	GGNNCC	3 cut(s)	76, 933, 1096
BmrFI	CCNGG	2 cut(s)	64, 645
BmsI	GCATC	3 cut(s)	18, 325, 855
BpiI	GAAGAC	1 cut(s)	615
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	63, 78, 644
BsaXI	ACNNNNNCTCC	4 cut(s)	826, 856, 911, 941
Bse3DI	GCAATG	3 cut(s)	348, 369, 918
BseBI	CCWGG	2 cut(s)	64, 645
BseDI	CCNNGG	3 cut(s)	63, 78, 644
BseGI	GGATG	6 cut(s)	33, 340, 361, 815, 846, 1189
BseMI	GCAATG	3 cut(s)	348, 369, 918
BseMII	CTCAG	2 cut(s)	780, 1149
BseRI	GAGGAG	1 cut(s)	328
BseSI	GKGCMC	1 cut(s)	1098
BseYI	CCCAGC	1 cut(s)	942
BsgI	GTGCAG	1 cut(s)	425
Bsh1236I	CGCG	2 cut(s)	286, 414
Bsh1285I	CGRYCG	1 cut(s)	59
BshFI	GGCC	8 cut(s)	62, 75, 106, 177, 299, 1012, 1096, 1115
BsiEI	CGRYCG	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	87
BslFI	GGGAC	2 cut(s)	80, 945
BsmAI	GTCTC	2 cut(s)	153, 1169
BsmBI	CGTCTC	2 cut(s)	153, 1169
BsmFI	GGGAC	2 cut(s)	80, 945
BsnI	GGCC	8 cut(s)	62, 75, 106, 177, 299, 1012, 1096, 1115
Bsp120I	GGGCCC	1 cut(s)	1094
Bsp1286I	GDGCHC	3 cut(s)	87, 787, 1098
Bsp143I	GATC	7 cut(s)	56, 143, 166, 274, 517, 826, 1150
Bsp68I	TCGCGA	1 cut(s)	414
BspACI	CCGC	7 cut(s)	8, 116, 338, 430, 866, 991, 1170
BspANI	GGCC	8 cut(s)	62, 75, 106, 177, 299, 1012, 1096, 1115
BspCNI	CTCAG	2 cut(s)	781, 1150
BspFNI	CGCG	2 cut(s)	286, 414
BspLI	GGNNCC	3 cut(s)	76, 933, 1096
BspPI	GGATC	4 cut(s)	151, 282, 525, 1145
BsrBI	CCGCTC	1 cut(s)	1172
BsrDI	GCAATG	3 cut(s)	348, 369, 918
BssECI	CCNNGG	3 cut(s)	63, 78, 644
BssMI	GATC	7 cut(s)	56, 143, 166, 274, 517, 826, 1150
BssNI	GRCGYC	1 cut(s)	69
Bst2UI	CCWGG	2 cut(s)	64, 645
Bst4CI	ACNGT	1 cut(s)	733
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	689
BstDEI	CTNAG	2 cut(s)	789, 1158
BstF5I	GGATG	6 cut(s)	33, 340, 361, 815, 846, 1189
BstFNI	CGCG	2 cut(s)	286, 414
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	7 cut(s)	59, 146, 169, 277, 520, 829, 1153
BstMAI	GTCTC	2 cut(s)	153, 1169
BstMBI	GATC	7 cut(s)	56, 143, 166, 274, 517, 826, 1150
BstMCI	CGRYCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	5 cut(s)	396, 843, 872, 1009, 1178
BstNI	CCWGG	2 cut(s)	64, 645
BstNSI	RCATGY	1 cut(s)	1091
BstSCI	CCNGG	2 cut(s)	62, 643
BstSFI	CTRYAG	1 cut(s)	555
BstSLI	GKGCMC	1 cut(s)	1098
BstUI	CGCG	2 cut(s)	286, 414
BstV2I	GAAGAC	1 cut(s)	615
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	8 cut(s)	62, 75, 106, 177, 299, 1012, 1096, 1115
BtsCI	GGATG	6 cut(s)	33, 340, 361, 815, 846, 1189
BtsI	GCAGTG	1 cut(s)	1029
BtsIMutI	CAGTG	3 cut(s)	588, 1029, 1119
BtuMI	TCGCGA	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	689
CfoI	GCGC	1 cut(s)	100
Cfr13I	GGNCC	6 cut(s)	74, 464, 932, 1094, 1095, 1114
CseI	GACGC	2 cut(s)	29, 1151
Csp6I	GTAC	1 cut(s)	729
CviAII	CATG	6 cut(s)	569, 822, 890, 968, 1088, 1212
CviQI	GTAC	1 cut(s)	729
DdeI	CTNAG	2 cut(s)	789, 1158
DpnI	GATC	7 cut(s)	58, 145, 168, 276, 519, 828, 1152
DpnII	GATC	7 cut(s)	56, 143, 166, 274, 517, 826, 1150
DraIII	CACNNNGTG	1 cut(s)	401
EaeI	YGGCCR	2 cut(s)	104, 297
Eco24I	GRGCYC	2 cut(s)	787, 1098
Eco47I	GGWCC	2 cut(s)	464, 932
Eco57I	CTGAAG	2 cut(s)	617, 648
EcoO109I	RGGNCCY	3 cut(s)	932, 1094, 1095
EcoRII	CCWGG	2 cut(s)	62, 643
EcoT22I	ATGCAT	2 cut(s)	446, 570
EcoT38I	GRGCYC	2 cut(s)	787, 1098
Esp3I	CGTCTC	2 cut(s)	153, 1169
FaeI	CATG	6 cut(s)	572, 825, 893, 971, 1091, 1215
FaqI	GGGAC	2 cut(s)	80, 945
FatI	CATG	6 cut(s)	568, 821, 889, 967, 1087, 1211
FauI	CCCGC	3 cut(s)	109, 859, 984
FauNDI	CATATG	2 cut(s)	440, 948
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	6 cut(s)	40, 347, 368, 822, 833, 1176
FriOI	GRGCYC	2 cut(s)	787, 1098
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	5 cut(s)	24, 699, 800, 806, 963
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	339
GsaI	CCCAGC	1 cut(s)	946
HaeIII	GGCC	8 cut(s)	62, 75, 106, 177, 299, 1012, 1096, 1115
HgaI	GACGC	2 cut(s)	29, 1151
HhaI	GCGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	6 cut(s)	572, 825, 893, 971, 1091, 1215
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HindIII	AAGCTT	4 cut(s)	458, 469, 638, 1055
HinfI	GANTC	6 cut(s)	39, 202, 409, 551, 748, 952
HphI	GGTGA	3 cut(s)	251, 881, 1159
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	6 cut(s)	82, 153, 628, 667, 747, 1159
Hpy188III	TCNNGA	6 cut(s)	43, 170, 332, 413, 527, 1083
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	4 cut(s)	167, 236, 1063, 1204
HpyCH4III	ACNGT	1 cut(s)	733
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	7 cut(s)	406, 444, 568, 676, 704, 846, 998
HpyF10VI	GCNNNNNNNGC	5 cut(s)	396, 843, 872, 1009, 1178
HpyF3I	CTNAG	2 cut(s)	789, 1158
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	6 cut(s)	572, 825, 893, 971, 1091, 1215
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	7 cut(s)	56, 143, 166, 274, 517, 826, 1150
LmnI	GCTCC	6 cut(s)	82, 315, 761, 834, 901, 1019
LweI	GCATC	3 cut(s)	18, 325, 855
MaeI	CTAG	5 cut(s)	24, 699, 800, 806, 963
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	1026
MalI	GATC	7 cut(s)	58, 145, 168, 276, 519, 828, 1152
MbiI	CCGCTC	1 cut(s)	1172
MboI	GATC	7 cut(s)	56, 143, 166, 274, 517, 826, 1150
MboII	GAAGA	4 cut(s)	147, 605, 615, 654
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	3 cut(s)	87, 787, 1098
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	6 cut(s)	530, 705, 814, 1006, 1103, 1144
MluNI	TGGCCA	1 cut(s)	299
MlyI	GAGTC	1 cut(s)	946
Mox20I	TGGCCA	1 cut(s)	299
Mph1103I	ATGCAT	2 cut(s)	446, 570
MroXI	GAANNNNTTC	1 cut(s)	609
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	5 cut(s)	363, 581, 651, 708, 1200
Msp20I	TGGCCA	1 cut(s)	299
MspR9I	CCNGG	2 cut(s)	64, 645
MvaI	CCWGG	2 cut(s)	64, 645
MvnI	CGCG	2 cut(s)	286, 414
MwoI	GCNNNNNNNGC	5 cut(s)	396, 843, 872, 1009, 1178
NdeI	CATATG	2 cut(s)	440, 948
NdeII	GATC	7 cut(s)	56, 143, 166, 274, 517, 826, 1150
NlaIII	CATG	6 cut(s)	572, 825, 893, 971, 1091, 1215
NlaIV	GGNNCC	3 cut(s)	76, 933, 1096
NmeAIII	GCCGAG	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	1026
NruI	TCGCGA	1 cut(s)	414
NsiI	ATGCAT	2 cut(s)	446, 570
NspI	RCATGY	1 cut(s)	1091
PciI	ACATGT	1 cut(s)	1087
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	609
PfeI	GAWTC	5 cut(s)	39, 202, 409, 551, 748
PkrI	GCNGC	1 cut(s)	340
Ple19I	CGATCG	1 cut(s)	59
PleI	GAGTC	1 cut(s)	946
PpsI	GAGTC	1 cut(s)	946
PpuMI	RGGWCCY	1 cut(s)	932
PscI	ACATGT	1 cut(s)	1087
Psp5II	RGGWCCY	1 cut(s)	932
Psp6I	CCWGG	2 cut(s)	62, 643
PspFI	CCCAGC	1 cut(s)	942
PspGI	CCWGG	2 cut(s)	62, 643
PspN4I	GGNNCC	3 cut(s)	76, 933, 1096
PspOMI	GGGCCC	1 cut(s)	1094
PspPI	GGNCC	6 cut(s)	74, 464, 932, 1094, 1095, 1114
PspPPI	RGGWCCY	1 cut(s)	932
PsuI	RGATCY	1 cut(s)	517
PvuI	CGATCG	1 cut(s)	59
RruI	TCGCGA	1 cut(s)	414
RsaI	GTAC	1 cut(s)	730
RsaNI	GTAC	1 cut(s)	729
SaqAI	TTAA	5 cut(s)	363, 581, 651, 708, 1200
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	7 cut(s)	56, 143, 166, 274, 517, 826, 1150
Sau96I	GGNCC	6 cut(s)	74, 464, 932, 1094, 1095, 1114
ScaI	AGTACT	1 cut(s)	730
SchI	GAGTC	1 cut(s)	946
ScrFI	CCNGG	2 cut(s)	64, 645
SduI	GDGCHC	3 cut(s)	87, 787, 1098
SfaNI	GCATC	3 cut(s)	18, 325, 855
SfcI	CTRYAG	1 cut(s)	555
SinI	GGWCC	2 cut(s)	464, 932
Sse9I	AATT	6 cut(s)	530, 705, 814, 1006, 1103, 1144
SsiI	CCGC	7 cut(s)	8, 116, 338, 430, 866, 991, 1170
SspI	AATATT	1 cut(s)	610
SspMI	CTAG	5 cut(s)	24, 699, 800, 806, 963
StyD4I	CCNGG	2 cut(s)	62, 643
TaaI	ACNGT	1 cut(s)	733
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	3 cut(s)	55, 256, 1174
TasI	AATT	6 cut(s)	530, 705, 814, 1006, 1103, 1144
TatI	WGTACW	1 cut(s)	728
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	5 cut(s)	39, 202, 409, 551, 748
Tru1I	TTAA	5 cut(s)	363, 581, 651, 708, 1200
Tru9I	TTAA	5 cut(s)	363, 581, 651, 708, 1200
TscAI	CASTG	3 cut(s)	595, 1029, 1126
TseFI	GTSAC	1 cut(s)	1026
Tsp45I	GTSAC	1 cut(s)	1026
TspDTI	ATGAA	2 cut(s)	684, 906
TspGWI	ACGGA	2 cut(s)	156, 337
TspRI	CASTG	3 cut(s)	595, 1029, 1126
VpaK11BI	GGWCC	2 cut(s)	464, 932
XapI	RAATTY	2 cut(s)	530, 1103
XceI	RCATGY	1 cut(s)	1091
XcmI	CCANNNNNNNNNTGG	1 cut(s)	828
XmnI	GAANNNNTTC	1 cut(s)	609
XspI	CTAG	5 cut(s)	24, 699, 800, 806, 963
ZraI	GACGTC	1 cut(s)	70
ZrmI	AGTACT	1 cut(s)	730
Zsp2I	ATGCAT	2 cut(s)	446, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.