Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040964.1

Orthogroup ID

OG0004952

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2765

Gene Structure 2765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040964.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 953 bp

atgacagcggtgggaatagactctaggatgctaaagcgaatcaggaaaaggcctcggtccgcctgggacgtcggcccctcggagtacgaaccagaggcgcaacggccattgttggctggtaatcaagcgaatggaagaaatggatcgcctccgaaacgagacgacgatcgtgaaggtcattatgtttataatctcggcgagaatctcactccaagatgcacatttggtcgagttttggaatgttgggatcgtcaaacacgtgaatatgtggccatcaaggttgttcggagcatacgaaagtaccgggacgcagcaatgattgaggtggatgtgcttaatcagattgccaacaacgatactggcaactcatggtacttgtcttctggctgtgtgcagattcgcgattggtttgattaccgcaatcacatatgcatagtgtttgagaagcttggaccaagcttatttgattttctaaagagaaataaatactgcccattccctgtggatcttgttcgggaatttggacgacagcttttggaatctgtagcatatatgcatgatttacgcttaatccacactgacctgaagccagaaaatattcttcttgtgtcttctgaatatgtaaagcttcctggttttaagaggttttcttcagatgaaatgcaatacaggtgcttgcccaagtctagtgccattaagctgattgattttggtagtactgtgtttgataatcagattcatagctccattgtttccacaaggcattacagagcccctgagattattctaggtctaggatggacttatccatgtgatctgtggagcgtaggttgcatccttgttgaactttgtgcgggtgaagcattatttcaaacgcatgagaacttggagcatttagcaatgatggagagggtattgggacctctgccccagcatatgactcagcgggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

317

Amino Acids

36.6

Weight (kDa)

8.04

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36627 AT4G32660 AT4G32660 AT4G32660 AT4G32660
fragaria_vesca	FvH4_2g36300 FvH4_2g36300 FvH4_2g36300 FvH4_2g36300
malus_domestica	MD15G1099600.v1.1
prunus_persica	Prupe.1G454400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0305581
rosa_laevigata	RLG00000010875
rosa_multiflora	Rmu_co8396459.1_g000001 Rmu_sc0001153.1_g000003 Rmu_sc0001809.1_g000008 Rmu_sc0040964.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291350 Rroxscaffold_4G00291890 Rroxscaffold_7G00162560
rosa_rugosa	Rorug06G0341900
rosa_samantha	Rh1BG043700 Rh2AG235500 Rh2DG242800 Rh6AG453900 Rh6BG447600 Rh6CG467600 Rh6DG454200 Rh7AG230900
rosa_wichuraiana	Rw6G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AatII	GACGTC	1 cut(s)	72
AccII	CGCG	1 cut(s)	402
AciI	CCGC	5 cut(s)	8, 60, 418, 854, 946
AclWI	GGATC	3 cut(s)	151, 255, 513
AcoI	YGGCCR	2 cut(s)	104, 270
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	2 cut(s)	605, 636
AcvI	CACGTG	1 cut(s)	260
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	4 cut(s)	86, 302, 374, 718
AflIII	ACRYGT	1 cut(s)	257
AgsI	TTSAA	2 cut(s)	845, 872
AjnI	CCWGG	2 cut(s)	62, 631
AluBI	AGCT	6 cut(s)	448, 459, 532, 628, 700, 744
AluI	AGCT	6 cut(s)	448, 459, 532, 628, 700, 744
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	3 cut(s)	151, 255, 513
AoxI	GGCC	4 cut(s)	50, 73, 104, 270
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	518
Asp700I	GAANNNNTTC	1 cut(s)	597
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	4 cut(s)	57, 74, 452, 920
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	869
AvaII	GGWCC	3 cut(s)	57, 452, 920
BaeI	ACNNNNGTAYC	2 cut(s)	284, 317
BalI	TGGCCA	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	775
BbrPI	CACGTG	1 cut(s)	260
BbsI	GAAGAC	2 cut(s)	372, 603
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	3 cut(s)	281, 792, 898
BceAI	ACGGC	1 cut(s)	119
BciT130I	CCWGG	2 cut(s)	64, 633
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	5 cut(s)	24, 687, 788, 794, 951
BfmI	CTRYAG	1 cut(s)	543
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
BmcAI	AGTACT	1 cut(s)	718
Bme1390I	CCNGG	3 cut(s)	64, 305, 633
Bme18I	GGWCC	3 cut(s)	57, 452, 920
BmgT120I	GGNCC	4 cut(s)	57, 74, 452, 920
BmiI	GGNNCC	2 cut(s)	76, 921
BmrFI	CCNGG	3 cut(s)	64, 305, 633
BmsI	GCATC	3 cut(s)	18, 206, 843
BpiI	GAAGAC	2 cut(s)	372, 603
BpuMI	CCSGG	1 cut(s)	305
BsaAI	YACGTR	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	53, 63, 78
BsaXI	ACNNNNNCTCC	2 cut(s)	814, 844
Bse1I	ACTGG	1 cut(s)	364
Bse3DI	GCAATG	2 cut(s)	321, 906
BseBI	CCWGG	2 cut(s)	64, 633
BseDI	CCNNGG	3 cut(s)	53, 63, 78
BseGI	GGATG	4 cut(s)	33, 334, 803, 834
BseMI	GCAATG	2 cut(s)	321, 906
BseMII	CTCAG	1 cut(s)	768
BseNI	ACTGG	1 cut(s)	364
BseXI	GCAGC	1 cut(s)	323
BseYI	CCCAGC	1 cut(s)	930
BsgI	GTGCAG	1 cut(s)	413
Bsh1236I	CGCG	1 cut(s)	402
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	4 cut(s)	52, 75, 106, 272
BsiEI	CGRYCG	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	304
BslFI	GGGAC	3 cut(s)	80, 320, 933
BsmAI	GTCTC	1 cut(s)	153
BsmBI	CGTCTC	1 cut(s)	153
BsmFI	GGGAC	3 cut(s)	80, 320, 933
BsnI	GGCC	4 cut(s)	52, 75, 106, 272
Bsp1286I	GDGCHC	1 cut(s)	775
Bsp143I	GATC	5 cut(s)	143, 166, 247, 505, 814
Bsp68I	TCGCGA	1 cut(s)	402
BspACI	CCGC	5 cut(s)	8, 60, 418, 854, 946
BspANI	GGCC	4 cut(s)	52, 75, 106, 272
BspCNI	CTCAG	1 cut(s)	769
BspFNI	CGCG	1 cut(s)	402
BspLI	GGNNCC	2 cut(s)	76, 921
BspPI	GGATC	3 cut(s)	151, 255, 513
BsrDI	GCAATG	2 cut(s)	321, 906
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	3 cut(s)	53, 63, 78
BssMI	GATC	5 cut(s)	143, 166, 247, 505, 814
BssNI	GRCGYC	1 cut(s)	69
Bst2UI	CCWGG	2 cut(s)	64, 633
Bst4CI	ACNGT	1 cut(s)	721
BstACI	GRCGYC	1 cut(s)	69
BstBAI	YACGTR	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	677, 948
BstDEI	CTNAG	2 cut(s)	777, 942
BstF5I	GGATG	4 cut(s)	33, 334, 803, 834
BstFNI	CGCG	1 cut(s)	402
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	5 cut(s)	146, 169, 250, 508, 817
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	5 cut(s)	143, 166, 247, 505, 814
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	831, 860
BstNI	CCWGG	2 cut(s)	64, 633
BstSCI	CCNGG	3 cut(s)	62, 303, 631
BstSFI	CTRYAG	1 cut(s)	543
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	323
BstV2I	GAAGAC	2 cut(s)	372, 603
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BsuRI	GGCC	4 cut(s)	52, 75, 106, 272
BtsCI	GGATG	4 cut(s)	33, 334, 803, 834
BtsIMutI	CAGTG	1 cut(s)	576
BtuMI	TCGCGA	1 cut(s)	402
Cac8I	GCNNGC	2 cut(s)	677, 948
CfoI	GCGC	1 cut(s)	100
Cfr13I	GGNCC	4 cut(s)	57, 74, 452, 920
CpoI	CGGWCCG	1 cut(s)	57
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	4 cut(s)	85, 301, 373, 717
CspI	CGGWCCG	1 cut(s)	57
CviAII	CATG	4 cut(s)	369, 557, 810, 878
CviQI	GTAC	4 cut(s)	85, 301, 373, 717
DdeI	CTNAG	2 cut(s)	777, 942
DpnI	GATC	5 cut(s)	145, 168, 249, 507, 816
DpnII	GATC	5 cut(s)	143, 166, 247, 505, 814
EaeI	YGGCCR	2 cut(s)	104, 270
EciI	GGCGGA	1 cut(s)	49
Eco147I	AGGCCT	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	775
Eco47I	GGWCC	3 cut(s)	57, 452, 920
Eco57I	CTGAAG	2 cut(s)	605, 636
Eco72I	CACGTG	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	920
EcoRII	CCWGG	2 cut(s)	62, 631
EcoT22I	ATGCAT	2 cut(s)	434, 558
EcoT38I	GRGCYC	1 cut(s)	775
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	4 cut(s)	372, 560, 813, 881
FaqI	GGGAC	3 cut(s)	80, 320, 933
FatI	CATG	4 cut(s)	368, 556, 809, 877
FauI	CCCGC	2 cut(s)	847, 939
FauNDI	CATATG	2 cut(s)	428, 936
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	4 cut(s)	40, 341, 810, 821
FriOI	GRGCYC	1 cut(s)	775
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	5 cut(s)	24, 687, 788, 794, 951
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	312
GsaI	CCCAGC	1 cut(s)	934
HaeIII	GGCC	4 cut(s)	52, 75, 106, 272
HapII	CCGG	1 cut(s)	304
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	4 cut(s)	372, 560, 813, 881
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HindIII	AAGCTT	3 cut(s)	446, 457, 626
HinfI	GANTC	7 cut(s)	20, 39, 202, 397, 539, 736, 940
HpaII	CCGG	1 cut(s)	304
HphI	GGTGA	1 cut(s)	869
Hpy188I	TCNGA	7 cut(s)	82, 153, 288, 342, 616, 655, 735
Hpy188III	TCNNGA	4 cut(s)	43, 170, 401, 515
Hpy99I	CGWCG	2 cut(s)	74, 167
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	1 cut(s)	721
HpyCH4IV	ACGT	2 cut(s)	69, 259
HpyCH4V	TGCA	6 cut(s)	219, 394, 432, 556, 664, 834
HpyF10VI	GCNNNNNNNGC	2 cut(s)	831, 860
HpyF3I	CTNAG	2 cut(s)	777, 942
HpySE526I	ACGT	2 cut(s)	69, 259
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	4 cut(s)	372, 560, 813, 881
HspAI	GCGC	1 cut(s)	98
Kzo9I	GATC	5 cut(s)	143, 166, 247, 505, 814
LmnI	GCTCC	4 cut(s)	288, 749, 822, 889
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	3 cut(s)	18, 206, 843
MaeI	CTAG	5 cut(s)	24, 687, 788, 794, 951
MaeII	ACGT	2 cut(s)	69, 259
MalI	GATC	5 cut(s)	145, 168, 249, 507, 816
MboI	GATC	5 cut(s)	143, 166, 247, 505, 814
MboII	GAAGA	5 cut(s)	147, 372, 593, 603, 642
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	1 cut(s)	775
MlsI	TGGCCA	1 cut(s)	272
MluCI	AATT	1 cut(s)	518
MluNI	TGGCCA	1 cut(s)	272
MlyI	GAGTC	2 cut(s)	14, 934
MnlI	CCTC	8 cut(s)	63, 88, 88, 159, 316, 636, 903, 933
Mox20I	TGGCCA	1 cut(s)	272
Mph1103I	ATGCAT	2 cut(s)	434, 558
MroXI	GAANNNNTTC	1 cut(s)	597
MscI	TGGCCA	1 cut(s)	272
MseI	TTAA	4 cut(s)	336, 569, 639, 696
Msp20I	TGGCCA	1 cut(s)	272
MspA1I	CMGCKG	2 cut(s)	8, 946
MspI	CCGG	1 cut(s)	304
MspR9I	CCNGG	3 cut(s)	64, 305, 633
MvaI	CCWGG	2 cut(s)	64, 633
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	2 cut(s)	831, 860
NciI	CCSGG	1 cut(s)	305
NdeI	CATATG	2 cut(s)	428, 936
NdeII	GATC	5 cut(s)	143, 166, 247, 505, 814
NlaIII	CATG	4 cut(s)	372, 560, 813, 881
NlaIV	GGNNCC	2 cut(s)	76, 921
NmeAIII	GCCGAG	1 cut(s)	174
NruI	TCGCGA	1 cut(s)	402
NsiI	ATGCAT	2 cut(s)	434, 558
PceI	AGGCCT	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	2 cut(s)	256, 292
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	5 cut(s)	39, 202, 397, 539, 736
PkrI	GCNGC	1 cut(s)	313
Ple19I	CGATCG	1 cut(s)	169
PleI	GAGTC	2 cut(s)	14, 934
PmaCI	CACGTG	1 cut(s)	260
PmlI	CACGTG	1 cut(s)	260
PpsI	GAGTC	2 cut(s)	14, 934
Ppu21I	YACGTR	1 cut(s)	260
PpuMI	RGGWCCY	1 cut(s)	920
PsiI	TTATAA	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	920
Psp6I	CCWGG	2 cut(s)	62, 631
PspCI	CACGTG	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	930
PspGI	CCWGG	2 cut(s)	62, 631
PspN4I	GGNNCC	2 cut(s)	76, 921
PspPI	GGNCC	4 cut(s)	57, 74, 452, 920
PspPPI	RGGWCCY	1 cut(s)	920
PsuI	RGATCY	1 cut(s)	505
PvuI	CGATCG	1 cut(s)	169
RruI	TCGCGA	1 cut(s)	402
RsaI	GTAC	4 cut(s)	86, 302, 374, 718
RsaNI	GTAC	4 cut(s)	85, 301, 373, 717
Rsr2I	CGGWCCG	1 cut(s)	57
RsrII	CGGWCCG	1 cut(s)	57
SaqAI	TTAA	4 cut(s)	336, 569, 639, 696
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	5 cut(s)	143, 166, 247, 505, 814
Sau96I	GGNCC	4 cut(s)	57, 74, 452, 920
ScaI	AGTACT	1 cut(s)	718
SchI	GAGTC	2 cut(s)	14, 934
ScrFI	CCNGG	3 cut(s)	64, 305, 633
SduI	GDGCHC	1 cut(s)	775
SfaNI	GCATC	3 cut(s)	18, 206, 843
SfcI	CTRYAG	1 cut(s)	543
SinI	GGWCC	3 cut(s)	57, 452, 920
Sse9I	AATT	1 cut(s)	518
SseBI	AGGCCT	1 cut(s)	52
SsiI	CCGC	5 cut(s)	8, 60, 418, 854, 946
SspI	AATATT	1 cut(s)	598
SspMI	CTAG	5 cut(s)	24, 687, 788, 794, 951
StuI	AGGCCT	1 cut(s)	52
StyD4I	CCNGG	3 cut(s)	62, 303, 631
TaaI	ACNGT	1 cut(s)	721
TaiI	ACGT	2 cut(s)	72, 262
TaqI	TCGA	1 cut(s)	229
TaqII	GACCGA	1 cut(s)	45
TasI	AATT	1 cut(s)	518
TatI	WGTACW	1 cut(s)	716
TfiI	GAWTC	5 cut(s)	39, 202, 397, 539, 736
Tru1I	TTAA	4 cut(s)	336, 569, 639, 696
Tru9I	TTAA	4 cut(s)	336, 569, 639, 696
TscAI	CASTG	1 cut(s)	583
TseI	GCWGC	1 cut(s)	311
TspDTI	ATGAA	2 cut(s)	672, 728
TspRI	CASTG	1 cut(s)	583
VpaK11BI	GGWCC	3 cut(s)	57, 452, 920
XapI	RAATTY	1 cut(s)	518
XcmI	CCANNNNNNNNNTGG	1 cut(s)	816
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	5 cut(s)	24, 687, 788, 794, 951
ZraI	GACGTC	1 cut(s)	70
ZrmI	AGTACT	1 cut(s)	718
Zsp2I	ATGCAT	2 cut(s)	434, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.