Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004952

Physical Location & Seq

Genomic Coordinates Forward (+)

22067887 .. 22068293

Gene Structure 407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG230900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGCTAAAGCGAATCAGTAAAAGGCCTTGGTCGGCGTGGGACGTCGGACCGTCGGAATTCGAACCAGAGGCGCACCGGCCGATGTTGGCGGGTAATCAAGGGAATGGAAGGCATGGATCGCCTCCGAAACGAGACGATGATCATAATGCCCTTCACGTTTTCAATCTCGGCGAGAATATCACTCCAAGATATAAAATACTTAACAAGATGGGTGAAGGTCAGCTGTCAAGTGCCCTGATGTCTACTAGATTTTACAATTTCATTCGTTCTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

92

Amino Acids

10.41

Weight (kDa)

9.86

Isoelectric Point (pI)

57.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36627 AT4G32660 AT4G32660 AT4G32660 AT4G32660
fragaria_vesca	FvH4_2g36300 FvH4_2g36300 FvH4_2g36300 FvH4_2g36300
malus_domestica	MD15G1099600.v1.1
prunus_persica	Prupe.1G454400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0305581
rosa_laevigata	RLG00000010875
rosa_multiflora	Rmu_co8396459.1_g000001 Rmu_sc0001153.1_g000003 Rmu_sc0001809.1_g000008 Rmu_sc0040964.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291350 Rroxscaffold_4G00291890 Rroxscaffold_7G00162560
rosa_rugosa	Rorug06G0341900
rosa_samantha	Rh1BG043700 Rh2AG235500 Rh2DG242800 Rh6AG453900 Rh6BG447600 Rh6CG467600 Rh6DG454200 Rh7AG230900
rosa_wichuraiana	Rw6G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	45
AccI	GTMKAC	1 cut(s)	242
AciI	CCGC	1 cut(s)	89
AclWI	GGATC	1 cut(s)	124
AcoI	YGGCCR	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	42
AgsI	TTSAA	1 cut(s)	163
AluBI	AGCT	1 cut(s)	223
AluI	AGCT	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	1 cut(s)	124
AoxI	GGCC	2 cut(s)	23, 77
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	224
AsuII	TTCGAA	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	235
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	1 cut(s)	202
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	246
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	47
Bpu14I	TTCGAA	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	26
Bse118I	RCCGGY	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	235
BseX3I	CGGCCG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	259
Bsh1285I	CGRYCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	25, 79
BsiEI	CGRYCG	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	76
BslFI	GGGAC	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	126
BsmBI	CGTCTC	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	25, 79
Bsp119I	TTCGAA	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	116, 139
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	2 cut(s)	25, 79
BspPI	GGATC	1 cut(s)	124
BspT104I	TTCGAA	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	75
BssAI	RCCGGY	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	2 cut(s)	116, 139
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	2 cut(s)	119, 142
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	2 cut(s)	116, 139
BstMCI	CGRYCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstSLI	GKGCMC	1 cut(s)	235
BstV1I	GCAGC	1 cut(s)	259
BstZI	CGGCCG	1 cut(s)	77
BsuRI	GGCC	2 cut(s)	25, 79
CfoI	GCGC	1 cut(s)	73
Cfr10I	RCCGGY	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	47
CpoI	CGGWCCG	1 cut(s)	47
CspI	CGGWCCG	1 cut(s)	47
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	3 cut(s)	25, 79, 223
CviKI_1	RGCY	3 cut(s)	25, 79, 223
DpnI	GATC	2 cut(s)	118, 141
DpnII	GATC	2 cut(s)	116, 139
EaeI	YGGCCR	1 cut(s)	77
EagI	CGGCCG	1 cut(s)	77
EclXI	CGGCCG	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	26
Eco147I	AGGCCT	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	47
Eco52I	CGGCCG	1 cut(s)	77
EcoRI	GAATTC	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	26
Esp3I	CGTCTC	1 cut(s)	126
FaeI	CATG	1 cut(s)	116
FaiI	YATR	3 cut(s)	114, 144, 192
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	1 cut(s)	112
FauI	CCCGC	1 cut(s)	82
FbaI	TGATCA	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	242
Fnu4HI	GCNGC	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	1 cut(s)	246
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	25, 79
HapII	CCGG	1 cut(s)	76
HhaI	GCGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	1 cut(s)	116
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	3 cut(s)	47, 55, 126
Hpy8I	GTNNAC	1 cut(s)	243
Hpy99I	CGWCG	2 cut(s)	47, 55
HpyAV	CCTTC	3 cut(s)	102, 161, 209
HpyCH4III	ACNGT	1 cut(s)	51
HpyCH4IV	ACGT	2 cut(s)	42, 156
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HpySE526I	ACGT	2 cut(s)	42, 156
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	116
HspAI	GCGC	1 cut(s)	71
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	116, 139
LpnPI	CCDG	3 cut(s)	78, 89, 248
Lsp1109I	GCAGC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	2 cut(s)	42, 156
MalI	GATC	2 cut(s)	118, 141
MboI	GATC	2 cut(s)	116, 139
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	2 cut(s)	56, 256
MmeI	TCCRAC	2 cut(s)	25, 33
MnlI	CCTC	2 cut(s)	61, 132
MseI	TTAA	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	118
NdeII	GATC	2 cut(s)	116, 139
NlaIII	CATG	1 cut(s)	116
NmeAIII	GCCGAG	1 cut(s)	147
NspV	TTCGAA	1 cut(s)	60
PceI	AGGCCT	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	47
PvuII	CAGCTG	1 cut(s)	223
Rsr2I	CGGWCCG	1 cut(s)	47
RsrII	CGGWCCG	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	2 cut(s)	116, 139
Sau96I	GGNCC	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	4 cut(s)	45, 159, 220, 225
SfuI	TTCGAA	1 cut(s)	60
SinI	GGWCC	1 cut(s)	47
Sse9I	AATT	2 cut(s)	56, 256
SseBI	AGGCCT	1 cut(s)	25
SsiI	CCGC	1 cut(s)	89
SspMI	CTAG	1 cut(s)	246
StuI	AGGCCT	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	51
TaiI	ACGT	2 cut(s)	45, 159
TaqI	TCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	56, 256
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TseI	GCWGC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	242
XspI	CTAG	1 cut(s)	246
ZraI	GACGTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.