Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004952

Physical Location & Seq

Genomic Coordinates Reverse (-)

63933775 .. 63937317

Gene Structure 3543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG467600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGATTGAGGTGGATGTGCTTAATCAGATTGCCAGCAACGATACTGGCAACTCATGCTGTGTGCAGATTCGCGATTGGTTTGATTACCGCAATCACATATGCATAGTGTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGATTTACGCTTAATCCACACTGACCTGAAGCCAGAAAATATTCTTCTTGTGTCTTCTGAATATGTAAAGCTTCCTGGTTTTAAGAGGTTTTCTTCAGATGAAATGCAATACAGGTGCTTGCCCAAGTCTAGTGCCATTAAGCTGATTGATTTTGGTAGTACTGTGTTTGATAATCAGATTCATAGCTCCATTGTTTCCACAAGGCATTACAGAGCCCCTGAGATTATTCTAGGTCTAGGATGGACTTATCCATGTGATCTGTGGAGCGTAGGTTGCATCCTTGTTGAACTTTGTGCGGGTGAAGCATTATTTCAAACGCATGAGAACTTGGAGCATTTAGCAATGATGGAGAGGGTATTGGGACCTCTGCCCCAGCATATGACTCAGCGGGCTAGTCATGGTGCTGAAAAGTATTTTAGGAGGGGTGCAAGGCTGAATTGGCCTTTAGGAGCAGTGTCGCGGGAGAGTATAAGAGCCGTTAAGAAGCTTGATAGTTTGAAGGATATGGTATCACGACGTGTAGGGTCCTCAAAATCCAGTTCGTTCCTCACTGATTTGTTGTATGGGCTGTTGAAATATGATCCATCTGAGCGTCTCTCGGCTCGACAGGCCCTTGCTCATCCCTTTTTCAAGATAACAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

290

Amino Acids

33.22

Weight (kDa)

8.57

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	19 - 286	2.9e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	30 - 194	1.3e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36627 AT4G32660 AT4G32660 AT4G32660 AT4G32660
fragaria_vesca	FvH4_2g36300 FvH4_2g36300 FvH4_2g36300 FvH4_2g36300
malus_domestica	MD15G1099600.v1.1
prunus_persica	Prupe.1G454400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0305581
rosa_laevigata	RLG00000010875
rosa_multiflora	Rmu_co8396459.1_g000001 Rmu_sc0001153.1_g000003 Rmu_sc0001809.1_g000008 Rmu_sc0040964.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291350 Rroxscaffold_4G00291890 Rroxscaffold_7G00162560
rosa_rugosa	Rorug06G0341900
rosa_samantha	Rh1BG043700 Rh2AG235500 Rh2DG242800 Rh6AG453900 Rh6BG447600 Rh6CG467600 Rh6DG454200 Rh7AG230900
rosa_wichuraiana	Rw6G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	72, 688
AciI	CCGC	4 cut(s)	88, 524, 616, 688
AclWI	GGATC	2 cut(s)	183, 803
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	2 cut(s)	275, 306
AdeI	CACNNNGTG	1 cut(s)	746
AfaI	GTAC	1 cut(s)	388
AflIII	ACRYGT	1 cut(s)	745
AgsI	TTSAA	5 cut(s)	515, 542, 727, 802, 859
AjiI	CACGTC	1 cut(s)	746
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	7 cut(s)	118, 129, 202, 298, 370, 414, 715
AluI	AGCT	7 cut(s)	118, 129, 202, 298, 370, 414, 715
Alw26I	GTCTC	1 cut(s)	827
AlwI	GGATC	2 cut(s)	183, 803
AoxI	GGCC	2 cut(s)	668, 837
ApoI	RAATTY	1 cut(s)	188
Asp700I	GAANNNNTTC	1 cut(s)	267
AspS9I	GGNCC	4 cut(s)	122, 590, 753, 838
AsuHPI	GGTGA	1 cut(s)	539
AvaII	GGWCC	3 cut(s)	122, 590, 753
BanII	GRGCYC	1 cut(s)	445
BbsI	GAAGAC	1 cut(s)	273
BccI	CCATC	3 cut(s)	462, 568, 820
BceAI	ACGGC	1 cut(s)	689
BciT130I	CCWGG	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	827
BfaI	CTAG	4 cut(s)	357, 458, 464, 621
BfmI	CTRYAG	1 cut(s)	213
BmcAI	AGTACT	1 cut(s)	388
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	3 cut(s)	122, 590, 753
BmgBI	CACGTC	1 cut(s)	746
BmgT120I	GGNCC	4 cut(s)	122, 590, 753, 838
BmiI	GGNNCC	2 cut(s)	591, 754
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	513
BpiI	GAAGAC	1 cut(s)	273
BplI	GAGNNNNNCTC	2 cut(s)	809, 841
BsaXI	ACNNNNNCTCC	2 cut(s)	484, 514
Bse1I	ACTGG	2 cut(s)	49, 765
Bse3DI	GCAATG	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	303
BseGI	GGATG	4 cut(s)	19, 473, 504, 847
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	3 cut(s)	438, 626, 807
BseNI	ACTGG	2 cut(s)	49, 765
BseYI	CCCAGC	1 cut(s)	600
BsgI	GTGCAG	1 cut(s)	83
Bsh1236I	CGCG	2 cut(s)	72, 688
BshFI	GGCC	2 cut(s)	670, 839
BslFI	GGGAC	1 cut(s)	603
BsmAI	GTCTC	1 cut(s)	827
BsmBI	CGTCTC	1 cut(s)	827
BsmFI	GGGAC	1 cut(s)	603
BsnI	GGCC	2 cut(s)	670, 839
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	3 cut(s)	175, 484, 808
Bsp68I	TCGCGA	1 cut(s)	72
BspACI	CCGC	4 cut(s)	88, 524, 616, 688
BspANI	GGCC	2 cut(s)	670, 839
BspCNI	CTCAG	3 cut(s)	439, 625, 808
BspFNI	CGCG	2 cut(s)	72, 688
BspLI	GGNNCC	2 cut(s)	591, 754
BspPI	GGATC	2 cut(s)	183, 803
BsrDI	GCAATG	1 cut(s)	576
BsrI	ACTGG	2 cut(s)	49, 765
BssMI	GATC	3 cut(s)	175, 484, 808
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	391
BstAPI	GCANNNNNTGC	1 cut(s)	54
BstC8I	GCNNGC	3 cut(s)	34, 347, 618
BstDEI	CTNAG	3 cut(s)	447, 612, 816
BstF5I	GGATG	4 cut(s)	19, 473, 504, 847
BstFNI	CGCG	2 cut(s)	72, 688
BstKTI	GATC	3 cut(s)	178, 487, 811
BstMAI	GTCTC	1 cut(s)	827
BstMBI	GATC	3 cut(s)	175, 484, 808
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 501, 530, 667, 836
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	301
BstSFI	CTRYAG	1 cut(s)	213
BstUI	CGCG	2 cut(s)	72, 688
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	2 cut(s)	670, 839
BtrI	CACGTC	1 cut(s)	746
BtsCI	GGATG	4 cut(s)	19, 473, 504, 847
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	3 cut(s)	246, 687, 777
BtuMI	TCGCGA	1 cut(s)	72
Cac8I	GCNNGC	3 cut(s)	34, 347, 618
Cfr13I	GGNCC	4 cut(s)	122, 590, 753, 838
CseI	GACGC	1 cut(s)	809
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	5 cut(s)	54, 227, 480, 548, 626
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	3 cut(s)	447, 612, 816
DpnI	GATC	3 cut(s)	177, 486, 810
DpnII	GATC	3 cut(s)	175, 484, 808
DraIII	CACNNNGTG	1 cut(s)	746
Eco24I	GRGCYC	1 cut(s)	445
Eco47I	GGWCC	3 cut(s)	122, 590, 753
Eco57I	CTGAAG	2 cut(s)	275, 306
EcoO109I	RGGNCCY	3 cut(s)	590, 753, 838
EcoRII	CCWGG	1 cut(s)	301
EcoT22I	ATGCAT	2 cut(s)	104, 228
EcoT38I	GRGCYC	1 cut(s)	445
Esp3I	CGTCTC	1 cut(s)	827
FaeI	CATG	5 cut(s)	57, 230, 483, 551, 629
FaqI	GGGAC	1 cut(s)	603
FatI	CATG	5 cut(s)	53, 226, 479, 547, 625
FauI	CCCGC	3 cut(s)	517, 609, 681
FauNDI	CATATG	2 cut(s)	98, 606
FokI	GGATG	4 cut(s)	26, 480, 491, 834
FriOI	GRGCYC	1 cut(s)	445
FspBI	CTAG	4 cut(s)	357, 458, 464, 621
GsaI	CCCAGC	1 cut(s)	604
HaeIII	GGCC	2 cut(s)	670, 839
HgaI	GACGC	1 cut(s)	809
Hin1II	CATG	5 cut(s)	57, 230, 483, 551, 629
HindIII	AAGCTT	4 cut(s)	116, 127, 296, 713
HinfI	GANTC	4 cut(s)	67, 209, 406, 610
HphI	GGTGA	1 cut(s)	539
Hpy188I	TCNGA	5 cut(s)	27, 286, 325, 405, 817
Hpy188III	TCNNGA	4 cut(s)	71, 185, 741, 859
Hpy99I	CGWCG	1 cut(s)	747
HpyAV	CCTTC	1 cut(s)	721
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	1 cut(s)	745
HpyCH4V	TGCA	6 cut(s)	64, 102, 226, 334, 504, 656
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 501, 530, 667, 836
HpyF3I	CTNAG	3 cut(s)	447, 612, 816
HpySE526I	ACGT	1 cut(s)	745
Hsp92II	CATG	5 cut(s)	57, 230, 483, 551, 629
Kzo9I	GATC	3 cut(s)	175, 484, 808
LmnI	GCTCC	4 cut(s)	419, 492, 559, 677
LweI	GCATC	1 cut(s)	513
MaeI	CTAG	4 cut(s)	357, 458, 464, 621
MaeII	ACGT	1 cut(s)	745
MalI	GATC	3 cut(s)	177, 486, 810
MboI	GATC	3 cut(s)	175, 484, 808
MboII	GAAGA	3 cut(s)	263, 273, 312
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	2 cut(s)	188, 664
MlyI	GAGTC	1 cut(s)	604
MnlI	CCTC	6 cut(s)	306, 573, 603, 642, 766, 785
Mph1103I	ATGCAT	2 cut(s)	104, 228
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	5 cut(s)	21, 239, 309, 366, 708
MspA1I	CMGCKG	1 cut(s)	616
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
MvnI	CGCG	2 cut(s)	72, 688
MwoI	GCNNNNNNNGC	5 cut(s)	54, 501, 530, 667, 836
NdeI	CATATG	2 cut(s)	98, 606
NdeII	GATC	3 cut(s)	175, 484, 808
NlaIII	CATG	5 cut(s)	57, 230, 483, 551, 629
NlaIV	GGNNCC	2 cut(s)	591, 754
NmeAIII	GCCGAG	1 cut(s)	806
NruI	TCGCGA	1 cut(s)	72
NsiI	ATGCAT	2 cut(s)	104, 228
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	3 cut(s)	67, 209, 406
PleI	GAGTC	1 cut(s)	604
PpsI	GAGTC	1 cut(s)	604
PpuMI	RGGWCCY	2 cut(s)	590, 753
Psp5II	RGGWCCY	2 cut(s)	590, 753
Psp6I	CCWGG	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	2 cut(s)	591, 754
PspPI	GGNCC	4 cut(s)	122, 590, 753, 838
PspPPI	RGGWCCY	2 cut(s)	590, 753
PsuI	RGATCY	1 cut(s)	175
RruI	TCGCGA	1 cut(s)	72
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
SaqAI	TTAA	5 cut(s)	21, 239, 309, 366, 708
Sau3AI	GATC	3 cut(s)	175, 484, 808
Sau96I	GGNCC	4 cut(s)	122, 590, 753, 838
ScaI	AGTACT	1 cut(s)	388
SchI	GAGTC	1 cut(s)	604
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	445
SfaNI	GCATC	1 cut(s)	513
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	3 cut(s)	122, 590, 753
Sse9I	AATT	2 cut(s)	188, 664
SsiI	CCGC	4 cut(s)	88, 524, 616, 688
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	4 cut(s)	357, 458, 464, 621
StyD4I	CCNGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	1 cut(s)	748
TaqI	TCGA	1 cut(s)	832
TasI	AATT	2 cut(s)	188, 664
TatI	WGTACW	1 cut(s)	386
TfiI	GAWTC	3 cut(s)	67, 209, 406
Tru1I	TTAA	5 cut(s)	21, 239, 309, 366, 708
Tru9I	TTAA	5 cut(s)	21, 239, 309, 366, 708
TscAI	CASTG	3 cut(s)	253, 687, 784
TspDTI	ATGAA	2 cut(s)	342, 398
TspRI	CASTG	3 cut(s)	253, 687, 784
VpaK11BI	GGWCC	3 cut(s)	122, 590, 753
XapI	RAATTY	1 cut(s)	188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	486
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	4 cut(s)	357, 458, 464, 621
ZrmI	AGTACT	1 cut(s)	388
Zsp2I	ATGCAT	2 cut(s)	104, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.