Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8396459.1

Orthogroup ID

OG0004952

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 940

Gene Structure 940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8396459.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 283 bp

atggattacgtgacggagtttcctctctctcatattgatcggcgccccagaaagaggcccaggttcgcttgggacggcccccaatcccacccaaaggctcagtcaggaatgtattatgagcaagatgttggaaatggaacaagctatggacatccgagggtacacccagaccatcctagtctttttgtaaaggggttgactcaaaaaggctctcccccatggcgtgaggatgacaaagatggacattacatgtttgctgttggagagaatttaacttctcgct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046483 GO:0046777 GO:0071704 GO:0090304 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

94

Amino Acids

10.85

Weight (kDa)

8.09

Isoelectric Point (pI)

55.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36627 AT4G32660 AT4G32660 AT4G32660 AT4G32660
fragaria_vesca	FvH4_2g36300 FvH4_2g36300 FvH4_2g36300 FvH4_2g36300
malus_domestica	MD15G1099600.v1.1
prunus_persica	Prupe.1G454400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0305581
rosa_laevigata	RLG00000010875
rosa_multiflora	Rmu_co8396459.1_g000001 Rmu_sc0001153.1_g000003 Rmu_sc0001809.1_g000008 Rmu_sc0040964.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291350 Rroxscaffold_4G00291890 Rroxscaffold_7G00162560
rosa_rugosa	Rorug06G0341900
rosa_samantha	Rh1BG043700 Rh2AG235500 Rh2DG242800 Rh6AG453900 Rh6BG447600 Rh6CG467600 Rh6DG454200 Rh7AG230900
rosa_wichuraiana	Rw6G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	268
AcyI	GRCGYC	1 cut(s)	43
AfaI	GTAC	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	54, 94
AflIII	ACRYGT	1 cut(s)	249
AjnI	CCWGG	1 cut(s)	59
AluBI	AGCT	1 cut(s)	144
AluI	AGCT	1 cut(s)	144
AoxI	GGCC	2 cut(s)	56, 76
ApoI	RAATTY	1 cut(s)	268
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	57, 77
BanI	GGYRCC	1 cut(s)	42
BccI	CCATC	2 cut(s)	180, 233
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	61
BfaI	CTAG	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	57, 77
BmiI	GGNNCC	2 cut(s)	44, 79
BmrFI	CCNGG	1 cut(s)	61
BsaAI	YACGTR	1 cut(s)	10
BsaHI	GRCGYC	1 cut(s)	43
BsaJI	CCNNGG	3 cut(s)	59, 155, 218
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 94
BseBI	CCWGG	1 cut(s)	61
BseDI	CCNNGG	3 cut(s)	59, 155, 218
BseGI	GGATG	3 cut(s)	151, 172, 235
BseLI	CCNNNNNNNGG	2 cut(s)	54, 94
BseMII	CTCAG	1 cut(s)	113
BshFI	GGCC	2 cut(s)	58, 78
BshNI	GGYRCC	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	2 cut(s)	54, 94
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	58, 78
Bsp143I	GATC	1 cut(s)	37
Bsp19I	CCATGG	1 cut(s)	218
BspANI	GGCC	2 cut(s)	58, 78
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	44, 79
BspT107I	GGYRCC	1 cut(s)	42
BssECI	CCNNGG	3 cut(s)	59, 155, 218
BssMI	GATC	1 cut(s)	37
BssNI	GRCGYC	1 cut(s)	43
BssT1I	CCWWGG	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	61
BstACI	GRCGYC	1 cut(s)	43
BstBAI	YACGTR	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	99
BstDSI	CCRYGG	1 cut(s)	218
BstF5I	GGATG	3 cut(s)	151, 172, 235
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	61
BstNSI	RCATGY	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	59
BsuRI	GGCC	2 cut(s)	58, 78
BtgI	CCRYGG	1 cut(s)	218
BtsCI	GGATG	3 cut(s)	151, 172, 235
CfoI	GCGC	1 cut(s)	45
Cfr13I	GGNCC	2 cut(s)	57, 77
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	2 cut(s)	219, 250
CviJI	RGCY	5 cut(s)	58, 78, 98, 144, 210
CviKI_1	RGCY	5 cut(s)	58, 78, 98, 144, 210
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	1 cut(s)	99
DinI	GGCGCC	1 cut(s)	44
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	218
EgeI	GGCGCC	1 cut(s)	44
EheI	GGCGCC	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	2 cut(s)	222, 253
FaiI	YATR	5 cut(s)	33, 117, 147, 220, 251
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	2 cut(s)	218, 249
FokI	GGATG	3 cut(s)	138, 159, 242
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	1 cut(s)	44
HaeII	RGCGCY	1 cut(s)	46
HaeIII	GGCC	2 cut(s)	58, 78
HhaI	GCGC	1 cut(s)	45
Hin1I	GRCGYC	1 cut(s)	43
Hin1II	CATG	2 cut(s)	222, 253
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HincII	GTYRAC	1 cut(s)	198
HindII	GTYRAC	1 cut(s)	198
HinfI	GANTC	1 cut(s)	199
Hpy166II	GTNNAC	2 cut(s)	163, 198
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	1 cut(s)	105
Hpy8I	GTNNAC	2 cut(s)	163, 198
HpyCH4IV	ACGT	1 cut(s)	9
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	43
Hsp92II	CATG	2 cut(s)	222, 253
HspAI	GCGC	1 cut(s)	43
KasI	GGCGCC	1 cut(s)	42
Kzo9I	GATC	1 cut(s)	37
LpnPI	CCDG	5 cut(s)	46, 61, 73, 90, 180
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MluCI	AATT	1 cut(s)	268
Mly113I	GGCGCC	1 cut(s)	43
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	2 cut(s)	109, 241
MnlI	CCTC	4 cut(s)	33, 48, 150, 220
MseI	TTAA	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	61
NarI	GGCGCC	1 cut(s)	43
NcoI	CCATGG	1 cut(s)	218
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	222, 253
NlaIV	GGNNCC	2 cut(s)	44, 79
NmuCI	GTSAC	1 cut(s)	10
NspI	RCATGY	1 cut(s)	253
PciI	ACATGT	1 cut(s)	249
PleI	GAGTC	1 cut(s)	193
PluTI	GGCGCC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	193
Ppu21I	YACGTR	1 cut(s)	10
PscI	ACATGT	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	59
PspN4I	GGNNCC	2 cut(s)	44, 79
PspPI	GGNCC	2 cut(s)	57, 77
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	272
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	2 cut(s)	57, 77
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	61
SetI	ASST	3 cut(s)	12, 65, 146
SfoI	GGCGCC	1 cut(s)	44
Sse9I	AATT	1 cut(s)	268
SspDI	GGCGCC	1 cut(s)	42
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	59
StyI	CCWWGG	1 cut(s)	218
TaiI	ACGT	1 cut(s)	12
TasI	AATT	1 cut(s)	268
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TseFI	GTSAC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	10
TspGWI	ACGGA	1 cut(s)	29
XapI	RAATTY	1 cut(s)	268
XceI	RCATGY	1 cut(s)	253
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.