Rroxscaffold_4G00291350

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
11805103 .. 11806310
1208 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00291350.1

Sequence Viewer

Length: 267 bp
ATGACGGCGGTGGGAATAGAAACTAGGATGCTAAAGCGAATCAGTAAAAGGCCTCGGTCGGCGTGGGTAATCAAGGGAATGGAAGGCAAGGATCGCCTCCGAAATGAGACGATGATCGATCTTGAAGGGCATTATGTTTACAATGTCGGCGAGAATATCACTCCAAGATATAAAATACTTAACAAGATGGGTGAATTAAGGTCCCTTCAGCTATCAAGTGCCCTGATGTCTACAAGATTTTACAATTTCATTCGTTCTGCTGCTTGA

Protein Analysis

88

Amino Acids

10.21

Weight (kDa)

10.33

Isoelectric Point (pI)

61.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 230
AciI CCGC 1 cut(s) 8
AclWI GGATC 1 cut(s) 99
AcuI CTGAAG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 125
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 1 cut(s) 99
AoxI GGCC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 1 cut(s) 201
BaeGI GKGCMC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 247
BccI CCATC 1 cut(s) 181
BceAI ACGGC 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 1 cut(s) 24
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 203
BmsI GCATC 1 cut(s) 18
Bsa29I ATCGAT 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 53
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 33
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 1 cut(s) 247
Bsh1285I CGRYCG 1 cut(s) 59
BshFI GGCC 1 cut(s) 52
BshVI ATCGAT 1 cut(s) 117
BsiEI CGRYCG 1 cut(s) 59
BslFI GGGAC 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 101
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 223
Bsp143I GATC 3 cut(s) 91, 114, 118
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 52
BspDI ATCGAT 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 203
BspPI GGATC 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 3 cut(s) 91, 114, 118
BstF5I GGATG 1 cut(s) 33
BstKTI GATC 3 cut(s) 94, 117, 121
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 3 cut(s) 91, 114, 118
BstMCI CGRYCG 1 cut(s) 59
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 247
Bsu15I ATCGAT 1 cut(s) 117
BsuRI GGCC 1 cut(s) 52
BsuTUI ATCGAT 1 cut(s) 117
BtsCI GGATG 1 cut(s) 33
Cfr13I GGNCC 1 cut(s) 201
ClaI ATCGAT 1 cut(s) 117
CviJI RGCY 2 cut(s) 52, 211
CviKI_1 RGCY 2 cut(s) 52, 211
DpnI GATC 3 cut(s) 93, 116, 120
DpnII GATC 3 cut(s) 91, 114, 118
Eco147I AGGCCT 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 101
FaiI YATR 2 cut(s) 135, 171
FaqI GGGAC 1 cut(s) 187
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 1 cut(s) 24
GluI GCNGC 1 cut(s) 261
HaeIII GGCC 1 cut(s) 52
HinfI GANTC 1 cut(s) 39
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 2 cut(s) 139, 231
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 2 cut(s) 139, 231
HpyAV CCTTC 3 cut(s) 77, 119, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
Kzo9I GATC 3 cut(s) 91, 114, 118
LpnPI CCDG 1 cut(s) 236
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 1 cut(s) 18
MaeI CTAG 1 cut(s) 24
MalI GATC 3 cut(s) 93, 116, 120
MboI GATC 3 cut(s) 91, 114, 118
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 2 cut(s) 194, 244
MnlI CCTC 2 cut(s) 63, 107
MseI TTAA 2 cut(s) 180, 197
MwoI GCNNNNNNNGC 1 cut(s) 93
NdeII GATC 3 cut(s) 91, 114, 118
NlaIV GGNNCC 1 cut(s) 203
PceI AGGCCT 1 cut(s) 52
PfeI GAWTC 1 cut(s) 39
PkrI GCNGC 1 cut(s) 262
PpuMI RGGWCCY 1 cut(s) 201
Psp5II RGGWCCY 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 203
PspPI GGNCC 1 cut(s) 201
PspPPI RGGWCCY 1 cut(s) 201
SaqAI TTAA 2 cut(s) 180, 197
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 3 cut(s) 91, 114, 118
Sau96I GGNCC 1 cut(s) 201
SduI GDGCHC 1 cut(s) 223
SetI ASST 2 cut(s) 203, 213
SfaNI GCATC 1 cut(s) 18
SinI GGWCC 1 cut(s) 201
Sse9I AATT 2 cut(s) 194, 244
SseBI AGGCCT 1 cut(s) 52
SsiI CCGC 1 cut(s) 8
SspMI CTAG 1 cut(s) 24
StuI AGGCCT 1 cut(s) 52
TaqI TCGA 1 cut(s) 117
TaqII GACCGA 1 cut(s) 45
TasI AATT 2 cut(s) 194, 244
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 2 cut(s) 180, 197
Tru9I TTAA 2 cut(s) 180, 197
TseI GCWGC 1 cut(s) 260
TspDTI ATGAA 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 201
XmiI GTMKAC 1 cut(s) 230
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.