Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004952

Physical Location & Seq

Genomic Coordinates Reverse (-)

49250612 .. 49251967

Gene Structure 1356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0341900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCAGCCCTTGATCTTCATGTTATGGCCTCTGTTTTTGGCATTCTGGGTACCATCTTCGCCTTCCTTGTCTACCTTGCCCCACTACCAACATTTTATAGGATTTTCAAGACAAAGTCTGTTCAAGGTTTCCAATCTACACCCTATTCAGTGGCATTGTTTAGCGCCATGTTAATGCTCTATTATGGCTTCCTCAAGACAAATGCTTTAATTCTCATCGTGGTCAATTCCATTGGCAGCTTCATCGAAACTGTGTACCTTGTAATGTACTTGATTTATGCACCACCAAAAGTCAGGATTTTCACAGCAAAGCTGCTTGTCCTGTTTAATGTCTTGGCTTATGGTTTGATCTTAGGGGGTACAAGCCAAATCCCAAATGCTAGTCGGCGGTTGACAGTTGTTGGGTATATCAATGTTGTGTTCAATGTCTCTGTGTTTGCTGCTCCTCTTAGTATTATGAGGCTGGTTATTAAAACAAAGAGTGTGGAATACATGTCATTCTCATTGTCACTCTGCTTAACCCTTTTAGCTGTTGTGTGGTTCTTCTATGGCCTTTTAATAGAAGATTTATTCATAGCGGCACCGAACATCTTAGGGTTCGCCTTTGGGATTGCGCAGATGATTATGTTCTTAGTCTACAAGAAAAAAAAGAAAGTTGCCTTACCAGAATGTAGTCTAAATGATCAGATACCAAACACAGACAGGGTTGCTACTGTAGAAAATGATGACATAGTAACAGCAGGTGAAACTAATACTCAAACTCAATTGGAAGCGGGGATAAAGAAGAGTTCAGAAGCTGATGATCATGAGAATCAATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

273

Amino Acids

30.23

Weight (kDa)

8.72

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	12 - 97	8.4e-23	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	133 - 218	6.9e-27	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36627 AT4G32660 AT4G32660 AT4G32660 AT4G32660
fragaria_vesca	FvH4_2g36300 FvH4_2g36300 FvH4_2g36300 FvH4_2g36300
malus_domestica	MD15G1099600.v1.1
prunus_persica	Prupe.1G454400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0305581
rosa_laevigata	RLG00000010875
rosa_multiflora	Rmu_co8396459.1_g000001 Rmu_sc0001153.1_g000003 Rmu_sc0001809.1_g000008 Rmu_sc0040964.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291350 Rroxscaffold_4G00291890 Rroxscaffold_7G00162560
rosa_rugosa	Rorug06G0341900
rosa_samantha	Rh1BG043700 Rh2AG235500 Rh2DG242800 Rh6AG453900 Rh6BG447600 Rh6CG467600 Rh6DG454200 Rh7AG230900
rosa_wichuraiana	Rw6G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	731
Acc16I	TGCGCA	1 cut(s)	615
Acc36I	ACCTGC	1 cut(s)	731
Acc65I	GGTACC	1 cut(s)	50
AccB1I	GGYRCC	2 cut(s)	50, 580
AccI	GTMKAC	2 cut(s)	72, 636
AciI	CCGC	3 cut(s)	388, 578, 773
AfaI	GTAC	4 cut(s)	52, 257, 269, 361
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	3 cut(s)	109, 125, 424
AluBI	AGCT	4 cut(s)	240, 313, 530, 797
AluI	AGCT	4 cut(s)	240, 313, 530, 797
Alw26I	GTCTC	1 cut(s)	433
AlwNI	CAGNNNCTG	1 cut(s)	797
AoxI	GGCC	2 cut(s)	27, 550
ApeKI	GCWGC	4 cut(s)	5, 237, 313, 440
Asp718I	GGTACC	1 cut(s)	50
AspLEI	GCGC	2 cut(s)	167, 616
AsuHPI	GGTGA	1 cut(s)	755
BanI	GGYRCC	2 cut(s)	50, 580
BbvI	GCAGC	4 cut(s)	17, 249, 300, 427
BccI	CCATC	1 cut(s)	62
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BclI	TGATCA	2 cut(s)	682, 802
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	714
BfoI	RGCGCY	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	731
BisI	GCNGC	5 cut(s)	6, 238, 314, 441, 579
BlsI	GCNGC	5 cut(s)	7, 239, 315, 442, 580
BmiI	GGNNCC	2 cut(s)	52, 582
BpuEI	CTTGAG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	4 cut(s)	17, 249, 300, 427
BshFI	GGCC	2 cut(s)	29, 552
BshNI	GGYRCC	2 cut(s)	50, 580
BsmAI	GTCTC	1 cut(s)	433
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	2 cut(s)	29, 552
Bsp143I	GATC	4 cut(s)	13, 348, 682, 802
BspACI	CCGC	3 cut(s)	388, 578, 773
BspANI	GGCC	2 cut(s)	29, 552
BspHI	TCATGA	1 cut(s)	805
BspLI	GGNNCC	2 cut(s)	52, 582
BspMI	ACCTGC	1 cut(s)	731
BspT107I	GGYRCC	2 cut(s)	50, 580
BssMI	GATC	4 cut(s)	13, 348, 682, 802
Bst4CI	ACNGT	3 cut(s)	253, 397, 715
Bst6I	CTCTTC	1 cut(s)	779
BstDEI	CTNAG	4 cut(s)	352, 449, 592, 631
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	167, 616
BstKTI	GATC	4 cut(s)	16, 351, 685, 805
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	4 cut(s)	13, 348, 682, 802
BstNSI	RCATGY	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	714
BstV1I	GCAGC	4 cut(s)	17, 249, 300, 427
BsuRI	GGCC	2 cut(s)	29, 552
BtsIMutI	CAGTG	1 cut(s)	156
BveI	ACCTGC	1 cut(s)	731
CaiI	CAGNNNCTG	1 cut(s)	797
CciI	TCATGA	1 cut(s)	805
CfoI	GCGC	2 cut(s)	167, 616
Csp6I	GTAC	4 cut(s)	51, 256, 268, 360
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	4 cut(s)	20, 169, 493, 806
CviQI	GTAC	4 cut(s)	51, 256, 268, 360
DdeI	CTNAG	4 cut(s)	352, 449, 592, 631
DpnI	GATC	4 cut(s)	15, 350, 684, 804
DpnII	GATC	4 cut(s)	13, 348, 682, 802
Eam1104I	CTCTTC	1 cut(s)	779
EarI	CTCTTC	1 cut(s)	779
FaeI	CATG	4 cut(s)	23, 172, 496, 809
FatI	CATG	4 cut(s)	19, 168, 492, 805
FauI	CCCGC	1 cut(s)	766
FbaI	TGATCA	2 cut(s)	682, 802
FblI	GTMKAC	2 cut(s)	72, 636
Fnu4HI	GCNGC	5 cut(s)	6, 238, 314, 441, 579
Fsp4HI	GCNGC	5 cut(s)	6, 238, 314, 441, 579
FspBI	CTAG	1 cut(s)	381
FspI	TGCGCA	1 cut(s)	615
GlaI	GCGC	2 cut(s)	166, 615
GluI	GCNGC	5 cut(s)	6, 238, 314, 441, 579
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	29, 552
HhaI	GCGC	2 cut(s)	167, 616
Hin1II	CATG	4 cut(s)	23, 172, 496, 809
Hin6I	GCGC	2 cut(s)	165, 614
HinP1I	GCGC	2 cut(s)	165, 614
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HinfI	GANTC	1 cut(s)	811
HphI	GGTGA	1 cut(s)	755
Hpy166II	GTNNAC	4 cut(s)	73, 256, 393, 637
Hpy188I	TCNGA	2 cut(s)	687, 793
Hpy188III	TCNNGA	4 cut(s)	109, 196, 295, 806
Hpy8I	GTNNAC	4 cut(s)	73, 256, 393, 637
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	3 cut(s)	253, 397, 715
HpyCH4V	TGCA	1 cut(s)	281
HpyF3I	CTNAG	4 cut(s)	352, 449, 592, 631
Hsp92II	CATG	4 cut(s)	23, 172, 496, 809
HspAI	GCGC	2 cut(s)	165, 614
KpnI	GGTACC	1 cut(s)	54
Ksp22I	TGATCA	2 cut(s)	682, 802
Kzo9I	GATC	4 cut(s)	13, 348, 682, 802
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	7 cut(s)	32, 280, 335, 449, 678, 688, 726
Lsp1109I	GCAGC	4 cut(s)	17, 249, 300, 427
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	2 cut(s)	507, 733
MalI	GATC	4 cut(s)	15, 350, 684, 804
MboI	GATC	4 cut(s)	13, 348, 682, 802
MboII	GAAGA	5 cut(s)	8, 49, 535, 575, 796
MfeI	CAATTG	1 cut(s)	764
MluCI	AATT	3 cut(s)	210, 226, 764
MnlI	CCTC	4 cut(s)	40, 203, 453, 456
MseI	TTAA	6 cut(s)	173, 209, 327, 471, 518, 557
MslI	CAYNNNNRTG	1 cut(s)	173
MunI	CAATTG	1 cut(s)	764
Mva1269I	GAATGC	1 cut(s)	42
NdeII	GATC	4 cut(s)	13, 348, 682, 802
NlaIII	CATG	4 cut(s)	23, 172, 496, 809
NlaIV	GGNNCC	2 cut(s)	52, 582
NmuCI	GTSAC	1 cut(s)	507
NsbI	TGCGCA	1 cut(s)	615
NspI	RCATGY	1 cut(s)	496
PagI	TCATGA	1 cut(s)	805
PaqCI	CACCTGC	1 cut(s)	731
PciI	ACATGT	1 cut(s)	492
PctI	GAATGC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	811
PflFI	GACNNNGTC	1 cut(s)	115
PkrI	GCNGC	5 cut(s)	7, 239, 315, 442, 580
PscI	ACATGT	1 cut(s)	492
PspN4I	GGNNCC	2 cut(s)	52, 582
PstNI	CAGNNNCTG	1 cut(s)	797
PsyI	GACNNNGTC	1 cut(s)	115
RsaI	GTAC	4 cut(s)	52, 257, 269, 361
RsaNI	GTAC	4 cut(s)	51, 256, 268, 360
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	6 cut(s)	173, 209, 327, 471, 518, 557
SatI	GCNGC	5 cut(s)	6, 238, 314, 441, 579
Sau3AI	GATC	4 cut(s)	13, 348, 682, 802
SetI	ASST	8 cut(s)	78, 130, 242, 261, 315, 532, 745, 799
SfcI	CTRYAG	1 cut(s)	714
SmiMI	CAYNNNNRTG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	3 cut(s)	210, 226, 764
SsiI	CCGC	3 cut(s)	388, 578, 773
SspMI	CTAG	1 cut(s)	381
TaaI	ACNGT	3 cut(s)	253, 397, 715
TaqI	TCGA	1 cut(s)	246
TasI	AATT	3 cut(s)	210, 226, 764
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	1 cut(s)	811
Tru1I	TTAA	6 cut(s)	173, 209, 327, 471, 518, 557
Tru9I	TTAA	6 cut(s)	173, 209, 327, 471, 518, 557
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	507
TseI	GCWGC	4 cut(s)	5, 237, 313, 440
Tsp45I	GTSAC	1 cut(s)	507
TspDTI	ATGAA	3 cut(s)	8, 232, 562
TspRI	CASTG	1 cut(s)	156
Tth111I	GACNNNGTC	1 cut(s)	115
XceI	RCATGY	1 cut(s)	496
XmiI	GTMKAC	2 cut(s)	72, 636
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.