Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004952

Physical Location & Seq

Genomic Coordinates Forward (+)

6935085 .. 6938754

Gene Structure 3670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1099600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGTGTCGACGGTGGGAGTAGAGACTAGGATGGAGAACTCGCAGAATCGAATCAGGAAGCGGCCGAGGTCGGCGTGGGACGTCGGCCCATCGCAATCGGAACCGGAGGCGCAACGGGCTGTGATGGCATGTAATGAAGGGAATGGAAGGCGTGGATCGCCTCCTAAACGAGACGATGATCGGGAAGGGCATTATATTTACAATCTCGGCGAGAATCTCACTTCAAGATATAAAATACTTAACAAGATGGGTGAAGGCACATTTGGCCGAGTTTTGGAATGTTGGGACCGTCAAACACGAGAGTATGTGGCAATCAAGGTAGTTCGAAGCATACGAAAATATCGGGAAGCAGCAATGATTGAGGTTGATGTGCTTGAACAGCTTGCTAAGCATGATAAGGGCAACTCACGCTGTGTGCAGATTCGCACTTGGTTTGATTACCGCAATCACATTTGCATTGTGTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTATAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGACTTACGCTTAATTCACACTGACCTGAAGCCAGAAAATATTCTTCTTGTGTCCTCTGAATATGTAAAGCTTCCTGGTTCTAAGAGGTTTTCTTCAGATGAAACGAATTACAGGTGCTTGCCCAAGTCTAGTGCCATTAAGCTGATTGATTTTGGTAGTACAGTGTCTGATGATCAGAACCATAGCTCCATTGTTTCTACCAGGCATTACAGAGCCCCTGAGATTATTCTAGGTCTAGGGTGGACTTACCCCTGTGATCTGTGGAGTATAGGGTGCATTCTTATTGAACTTTGTTCGGGAGAGGCATTATTTCAGACGCACGAGAACTTGGAGCATTTGGCAATGATGGAGAGGATATTGGGACCTCTGCCGCAACATATGACCCAAAAGGCCAACCATGGTGCTGAAAAGTATTTTAGGCGGGGTGCACGACTGAATTGGCCTTTAGGAGCAGTTTCAAGGGAGAGCATTAGAGCTGTAAAGAAGCTCGACTGTTTAAAGGATCTGATATTGCGACTTGTAGGGTCGTCGAAAGCTAGTTCCTACCTGACTGATTTGTTGTATGGGTTGCTGAAATACGATCCGTCTGAACGCCTCACGGCTCGACAGGCACTTGATCACCCCTTCTTCAAGATTCCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046777 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

409

Amino Acids

46.91

Weight (kDa)

9.1

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	77 - 404	8e-52	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	79 - 312	5e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36627 AT4G32660 AT4G32660 AT4G32660 AT4G32660
fragaria_vesca	FvH4_2g36300 FvH4_2g36300 FvH4_2g36300 FvH4_2g36300
malus_domestica	MD15G1099600.v1.1
prunus_persica	Prupe.1G454400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0305581
rosa_laevigata	RLG00000010875
rosa_multiflora	Rmu_co8396459.1_g000001 Rmu_sc0001153.1_g000003 Rmu_sc0001809.1_g000008 Rmu_sc0040964.1_g000001
rosa_roxburghii	Rroxscaffold_4G00291350 Rroxscaffold_4G00291890 Rroxscaffold_7G00162560
rosa_rugosa	Rorug06G0341900
rosa_samantha	Rh1BG043700 Rh2AG235500 Rh2DG242800 Rh6AG453900 Rh6BG447600 Rh6CG467600 Rh6DG454200 Rh7AG230900
rosa_wichuraiana	Rw6G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	497
AatII	GACGTC	1 cut(s)	84
AccI	GTMKAC	1 cut(s)	8
AciI	CCGC	4 cut(s)	61, 442, 953, 1003
AclWI	GGATC	4 cut(s)	163, 537, 1092, 1157
AcoI	YGGCCR	2 cut(s)	62, 265
AcsI	RAATTY	1 cut(s)	542
AcuI	CTGAAG	2 cut(s)	629, 660
AcyI	GRCGYC	1 cut(s)	81
AdeI	CACNNNGTG	1 cut(s)	413
AfaI	GTAC	1 cut(s)	742
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	5 cut(s)	225, 377, 869, 1041, 1213
AjnI	CCWGG	2 cut(s)	655, 782
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AloI	GAACNNNNNNTCC	2 cut(s)	752, 784
Alw21I	GWGCWC	1 cut(s)	1012
Alw26I	GTCTC	2 cut(s)	17, 165
Alw44I	GTGCAC	1 cut(s)	1008
AlwI	GGATC	4 cut(s)	163, 537, 1092, 1157
AlwNI	CAGNNNCTG	1 cut(s)	749
AoxI	GGCC	5 cut(s)	62, 85, 265, 972, 1022
ApaLI	GTGCAC	1 cut(s)	1008
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	542
Asp700I	GAANNNNTTC	1 cut(s)	621
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	4 cut(s)	86, 286, 476, 944
AsuHPI	GGTGA	2 cut(s)	263, 1193
AsuII	TTCGAA	1 cut(s)	325
AvaII	GGWCC	3 cut(s)	286, 476, 944
BaeGI	GKGCMC	1 cut(s)	1012
BanII	GRGCYC	1 cut(s)	799
BauI	CACGAG	2 cut(s)	297, 902
Bbv12I	GWGCWC	1 cut(s)	1012
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	5 cut(s)	25, 97, 118, 241, 922
BceAI	ACGGC	1 cut(s)	1197
BciT130I	CCWGG	2 cut(s)	657, 784
BclI	TGATCA	2 cut(s)	754, 1198
BcoDI	GTCTC	2 cut(s)	17, 165
BfaI	CTAG	5 cut(s)	27, 711, 812, 818, 1119
BfmI	CTRYAG	1 cut(s)	567
BisI	GCNGC	3 cut(s)	62, 351, 953
BlpI	GCTNAGC	1 cut(s)	387
BlsI	GCNGC	3 cut(s)	63, 352, 954
Bme1390I	CCNGG	2 cut(s)	657, 784
Bme18I	GGWCC	3 cut(s)	286, 476, 944
BmgT120I	GGNCC	4 cut(s)	86, 286, 476, 944
BmiI	GGNNCC	3 cut(s)	102, 287, 945
BmrFI	CCNGG	2 cut(s)	657, 784
Bpu1102I	GCTNAGC	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	325
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	65, 979
BsaWI	WCCGGW	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	752, 782
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse3DI	GCAATG	2 cut(s)	360, 930
BseBI	CCWGG	2 cut(s)	657, 784
BseDI	CCNNGG	2 cut(s)	65, 979
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMI	GCAATG	2 cut(s)	360, 930
BseMII	CTCAG	1 cut(s)	792
BseSI	GKGCMC	1 cut(s)	1012
BseX3I	CGGCCG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	362
BsgI	GTGCAG	1 cut(s)	437
Bsh1285I	CGRYCG	1 cut(s)	65
BshFI	GGCC	5 cut(s)	64, 87, 267, 974, 1024
BsiEI	CGRYCG	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	1012
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	3 cut(s)	92, 299, 957
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	2 cut(s)	17, 165
BsmBI	CGTCTC	1 cut(s)	165
BsmFI	GGGAC	3 cut(s)	92, 299, 957
BsmI	GAATGC	1 cut(s)	858
BsnI	GGCC	5 cut(s)	64, 87, 267, 974, 1024
Bsp119I	TTCGAA	1 cut(s)	325
Bsp1286I	GDGCHC	2 cut(s)	799, 1012
Bsp143I	GATC	8 cut(s)	155, 178, 529, 754, 838, 1084, 1162, 1198
Bsp1720I	GCTNAGC	1 cut(s)	387
Bsp19I	CCATGG	1 cut(s)	979
BspACI	CCGC	4 cut(s)	61, 442, 953, 1003
BspANI	GGCC	5 cut(s)	64, 87, 267, 974, 1024
BspCNI	CTCAG	1 cut(s)	793
BspLI	GGNNCC	3 cut(s)	102, 287, 945
BspPI	GGATC	4 cut(s)	163, 537, 1092, 1157
BspT104I	TTCGAA	1 cut(s)	325
BsrDI	GCAATG	2 cut(s)	360, 930
BssECI	CCNNGG	2 cut(s)	65, 979
BssMI	GATC	8 cut(s)	155, 178, 529, 754, 838, 1084, 1162, 1198
BssNI	GRCGYC	1 cut(s)	81
BssSI	CACGAG	2 cut(s)	297, 902
BssT1I	CCWWGG	1 cut(s)	979
Bst2BI	CACGAG	2 cut(s)	297, 902
Bst2UI	CCWGG	2 cut(s)	657, 784
Bst4CI	ACNGT	4 cut(s)	13, 290, 745, 1076
BstACI	GRCGYC	1 cut(s)	81
BstBI	TTCGAA	1 cut(s)	325
BstC8I	GCNNGC	2 cut(s)	384, 701
BstDEI	CTNAG	3 cut(s)	387, 663, 801
BstDSI	CCRYGG	1 cut(s)	979
BstF5I	GGATG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	8 cut(s)	158, 181, 532, 757, 841, 1087, 1165, 1201
BstMAI	GTCTC	2 cut(s)	17, 165
BstMBI	GATC	8 cut(s)	155, 178, 529, 754, 838, 1084, 1162, 1198
BstMCI	CGRYCG	1 cut(s)	65
BstMWI	GCNNNNNNNGC	8 cut(s)	116, 125, 157, 264, 379, 388, 408, 1190
BstNI	CCWGG	2 cut(s)	657, 784
BstNSI	RCATGY	1 cut(s)	132
BstSCI	CCNGG	2 cut(s)	655, 782
BstSFI	CTRYAG	1 cut(s)	567
BstSLI	GKGCMC	1 cut(s)	1012
BstV1I	GCAGC	1 cut(s)	362
BstX2I	RGATCY	2 cut(s)	529, 1084
BstYI	RGATCY	2 cut(s)	529, 1084
BstZI	CGGCCG	1 cut(s)	62
BsuRI	GGCC	5 cut(s)	64, 87, 267, 974, 1024
BtgI	CCRYGG	1 cut(s)	979
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	36
BtsIMutI	CAGTG	2 cut(s)	600, 750
Cac8I	GCNNGC	2 cut(s)	384, 701
CaiI	CAGNNNCTG	1 cut(s)	749
CfoI	GCGC	1 cut(s)	112
Cfr13I	GGNCC	4 cut(s)	86, 286, 476, 944
CseI	GACGC	1 cut(s)	907
Csp6I	GTAC	1 cut(s)	741
CviAII	CATG	4 cut(s)	129, 392, 581, 980
CviQI	GTAC	1 cut(s)	741
DdeI	CTNAG	3 cut(s)	387, 663, 801
DpnI	GATC	8 cut(s)	157, 180, 531, 756, 840, 1086, 1164, 1200
DpnII	GATC	8 cut(s)	155, 178, 529, 754, 838, 1084, 1162, 1198
DraI	TTTAAA	1 cut(s)	1080
DraIII	CACNNNGTG	1 cut(s)	413
EaeI	YGGCCR	2 cut(s)	62, 265
EagI	CGGCCG	1 cut(s)	62
EclXI	CGGCCG	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	979
Eco24I	GRGCYC	1 cut(s)	799
Eco47I	GGWCC	3 cut(s)	286, 476, 944
Eco52I	CGGCCG	1 cut(s)	62
Eco57I	CTGAAG	2 cut(s)	629, 660
EcoO109I	RGGNCCY	1 cut(s)	944
EcoRII	CCWGG	2 cut(s)	655, 782
EcoT14I	CCWWGG	1 cut(s)	979
EcoT22I	ATGCAT	1 cut(s)	582
EcoT38I	GRGCYC	1 cut(s)	799
ErhI	CCWWGG	1 cut(s)	979
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	4 cut(s)	132, 395, 584, 983
FaqI	GGGAC	3 cut(s)	92, 299, 957
FatI	CATG	4 cut(s)	128, 391, 580, 979
FauI	CCCGC	1 cut(s)	996
FauNDI	CATATG	1 cut(s)	960
FbaI	TGATCA	2 cut(s)	754, 1198
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	3 cut(s)	62, 351, 953
FokI	GGATG	1 cut(s)	43
FriOI	GRGCYC	1 cut(s)	799
Fsp4HI	GCNGC	3 cut(s)	62, 351, 953
FspBI	CTAG	5 cut(s)	27, 711, 812, 818, 1119
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	3 cut(s)	62, 351, 953
HaeIII	GGCC	5 cut(s)	64, 87, 267, 974, 1024
HapII	CCGG	1 cut(s)	104
HgaI	GACGC	1 cut(s)	907
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	4 cut(s)	132, 395, 584, 983
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HindIII	AAGCTT	3 cut(s)	470, 481, 650
HinfI	GANTC	6 cut(s)	46, 51, 214, 421, 563, 1216
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	2 cut(s)	263, 1193
Hpy166II	GTNNAC	3 cut(s)	9, 825, 1010
Hpy188I	TCNGA	8 cut(s)	100, 640, 679, 751, 759, 897, 1089, 1171
Hpy188III	TCNNGA	7 cut(s)	55, 182, 225, 344, 539, 879, 1213
Hpy8I	GTNNAC	3 cut(s)	9, 825, 1010
Hpy99I	CGWCG	3 cut(s)	13, 86, 1114
HpyAV	CCTTC	5 cut(s)	131, 141, 179, 248, 1216
HpyCH4III	ACNGT	4 cut(s)	13, 290, 745, 1076
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	5 cut(s)	418, 456, 580, 858, 1010
HpyF10VI	GCNNNNNNNGC	8 cut(s)	116, 125, 157, 264, 379, 388, 408, 1190
HpyF3I	CTNAG	3 cut(s)	387, 663, 801
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	4 cut(s)	132, 395, 584, 983
HspAI	GCGC	1 cut(s)	110
Ksp22I	TGATCA	2 cut(s)	754, 1198
Kzo9I	GATC	8 cut(s)	155, 178, 529, 754, 838, 1084, 1162, 1198
LmnI	GCTCC	3 cut(s)	773, 913, 1031
Lsp1109I	GCAGC	1 cut(s)	362
MaeI	CTAG	5 cut(s)	27, 711, 812, 818, 1119
MaeII	ACGT	1 cut(s)	81
MalI	GATC	8 cut(s)	157, 180, 531, 756, 840, 1086, 1164, 1200
MboI	GATC	8 cut(s)	155, 178, 529, 754, 838, 1084, 1162, 1198
MboII	GAAGA	3 cut(s)	617, 666, 1201
MflI	RGATCY	2 cut(s)	529, 1084
MhlI	GDGCHC	2 cut(s)	799, 1012
MluCI	AATT	4 cut(s)	542, 594, 688, 1018
Mph1103I	ATGCAT	1 cut(s)	582
MroXI	GAANNNNTTC	1 cut(s)	621
MseI	TTAA	4 cut(s)	240, 593, 720, 1079
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	2 cut(s)	657, 784
Mva1269I	GAATGC	1 cut(s)	858
MvaI	CCWGG	2 cut(s)	657, 784
MwoI	GCNNNNNNNGC	8 cut(s)	116, 125, 157, 264, 379, 388, 408, 1190
NcoI	CCATGG	1 cut(s)	979
NdeI	CATATG	1 cut(s)	960
NdeII	GATC	8 cut(s)	155, 178, 529, 754, 838, 1084, 1162, 1198
NlaIII	CATG	4 cut(s)	132, 395, 584, 983
NlaIV	GGNNCC	3 cut(s)	102, 287, 945
NmeAIII	GCCGAG	3 cut(s)	90, 186, 293
NsiI	ATGCAT	1 cut(s)	582
NspI	RCATGY	1 cut(s)	132
NspV	TTCGAA	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	331
PctI	GAATGC	1 cut(s)	858
PdmI	GAANNNNTTC	1 cut(s)	621
PfeI	GAWTC	6 cut(s)	46, 51, 214, 421, 563, 1216
PkrI	GCNGC	3 cut(s)	63, 352, 954
PpuMI	RGGWCCY	1 cut(s)	944
PsiI	TTATAA	1 cut(s)	497
Psp5II	RGGWCCY	1 cut(s)	944
Psp6I	CCWGG	2 cut(s)	655, 782
PspGI	CCWGG	2 cut(s)	655, 782
PspN4I	GGNNCC	3 cut(s)	102, 287, 945
PspPI	GGNCC	4 cut(s)	86, 286, 476, 944
PspPPI	RGGWCCY	1 cut(s)	944
PstNI	CAGNNNCTG	1 cut(s)	749
PsuI	RGATCY	2 cut(s)	529, 1084
RsaI	GTAC	1 cut(s)	742
RsaNI	GTAC	1 cut(s)	741
SalI	GTCGAC	1 cut(s)	7
SaqAI	TTAA	4 cut(s)	240, 593, 720, 1079
SatI	GCNGC	3 cut(s)	62, 351, 953
Sau3AI	GATC	8 cut(s)	155, 178, 529, 754, 838, 1084, 1162, 1198
Sau96I	GGNCC	4 cut(s)	86, 286, 476, 944
ScrFI	CCNGG	2 cut(s)	657, 784
SduI	GDGCHC	2 cut(s)	799, 1012
SfcI	CTRYAG	1 cut(s)	567
SfuI	TTCGAA	1 cut(s)	325
SinI	GGWCC	3 cut(s)	286, 476, 944
Sse9I	AATT	4 cut(s)	542, 594, 688, 1018
SsiI	CCGC	4 cut(s)	61, 442, 953, 1003
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	5 cut(s)	27, 711, 812, 818, 1119
StyD4I	CCNGG	2 cut(s)	655, 782
StyI	CCWWGG	1 cut(s)	979
TaaI	ACNGT	4 cut(s)	13, 290, 745, 1076
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	6 cut(s)	8, 49, 325, 1071, 1112, 1186
TasI	AATT	4 cut(s)	542, 594, 688, 1018
TatI	WGTACW	1 cut(s)	740
TauI	GCSGC	2 cut(s)	64, 955
TfiI	GAWTC	6 cut(s)	46, 51, 214, 421, 563, 1216
Tru1I	TTAA	4 cut(s)	240, 593, 720, 1079
Tru9I	TTAA	4 cut(s)	240, 593, 720, 1079
TscAI	CASTG	2 cut(s)	607, 750
TseI	GCWGC	1 cut(s)	350
TspDTI	ATGAA	2 cut(s)	150, 696
TspGWI	ACGGA	1 cut(s)	1155
TspRI	CASTG	2 cut(s)	607, 750
VneI	GTGCAC	1 cut(s)	1008
VpaK11BI	GGWCC	3 cut(s)	286, 476, 944
XapI	RAATTY	1 cut(s)	542
XceI	RCATGY	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	8
XmnI	GAANNNNTTC	1 cut(s)	621
XspI	CTAG	5 cut(s)	27, 711, 812, 818, 1119
ZraI	GACGTC	1 cut(s)	82
Zsp2I	ATGCAT	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.