FvH4_2g36330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015876
Physical Location & Seq
Reverse (-)
26611524 .. 26612613
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36330.t1

Sequence Viewer

Length: 786 bp
ATGGCCACAAACAGCAGAGAAGCACGAAGGAGGAAGATCCTGGAGAGAGGATCCGACCGCCTAGGTCTAATCACGGGTCGGATCCAAACACTCCCATCTTCTTCATTACCCGACCCACAAACCCAACTTGAAGACACAACAAACCCATCTTCACCGCCGTCAGTTTCCGATGTTCAGGACCAAATCGCCGAAGTACCTTCTGAAATTGAGGAGAAGGAAAACGAGTCTGATTCAACATCGCCAAGTAGCCAATCTGAAACAACCAGTGAAGCACTGAGAGCCATTGATTCTCAAGTCCACGAACTTATCGCCTCCTTAGCGGCTCAAAATGCACCGCCACCGCAGCAGCCGGTGCCACTACCACGGTTATATCAACAGCAAAGGCAGCCGCTTTTCACTGCCAGTGGATTAACCAATGCCATTGCAGAAACAGAAAGAACTCGTCTTTTGGTTTCGGCAGCAGTAGCGATTTTGGTTGTTCTGGTTCATGTGGGATTTCCTTTTCTGGGGAGGAGTAGCATTGTGAAGACCCTGCTGGGGTTTAGGCCGCTGTATCTGGTTTTGCTGACCAATGTGACATTTGTGCTGGCAAGGATTCTTGGTAAAAAGAGAGTGTTTGAAAGGTTTGAGGAGATTAGAGATTCGAGTGAAGGAGTTGAGTGGTATGCGCAGTTAGGGAAGGCTTTAGAGATATGCTTGGTAGCGCAGAAGGTACTTGATGCTCTGTTTATGGATTGTGCTGTCTATTCAATTATAGTTGTATGTGGTCTCTCATCTTCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

28.54

Weight (kDa)

5.25

Isoelectric Point (pI)

61.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32680
fragaria_vesca FvH4_2g36330
malus_domestica MD15G1099900.v1.1
prunus_persica Prupe.1G454700_v2.0.a1
pyrus_communis pycom08g10100 pycom15g09190
rosa_chinensis RchiOBHm_Chr6g0305551
rosa_multiflora Rmu_sc0000841.1_g000003 Rmu_sc0001153.1_g000006
rosa_roxburghii Rroxscaffold_7G00162580
rosa_rugosa Rorug06G0341600
rosa_samantha Rh6AG453600 Rh6BG448000 Rh6CG467400
rosa_wichuraiana Rw6G039530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 669
AccB1I GGYRCC 1 cut(s) 352
AciI CCGC 7 cut(s) 58, 155, 320, 335, 341, 389, 548
AclWI GGATC 5 cut(s) 31, 45, 58, 76, 89
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 195, 714
AfiI CCNNNNNNNGG 2 cut(s) 506, 537
AgsI TTSAA 4 cut(s) 131, 234, 620, 750
AjnI CCWGG 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 773
AlwI GGATC 5 cut(s) 31, 45, 58, 76, 89
AoxI GGCC 2 cut(s) 3, 545
ApeKI GCWGC 4 cut(s) 343, 346, 385, 458
AspA2I CCTAGG 1 cut(s) 61
AspLEI GCGC 2 cut(s) 670, 706
AspS9I GGNCC 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 144
AvaII GGWCC 1 cut(s) 178
AvrII CCTAGG 1 cut(s) 61
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 2 cut(s) 50, 81
BanI GGYRCC 1 cut(s) 352
BbsI GAAGAC 2 cut(s) 138, 533
BbvI GCAGC 4 cut(s) 355, 358, 397, 470
BccI CCATC 2 cut(s) 103, 154
BceAI ACGGC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 773
BfaI CTAG 1 cut(s) 62
BisI GCNGC 7 cut(s) 321, 344, 347, 386, 389, 459, 548
BlnI CCTAGG 1 cut(s) 61
BlsI GCNGC 7 cut(s) 322, 345, 348, 387, 390, 460, 549
Bme1390I CCNGG 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 3 cut(s) 52, 83, 354
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 709
BpiI GAAGAC 2 cut(s) 138, 533
BpmI CTGGAG 1 cut(s) 62
Bpu10I CCTNAGC 1 cut(s) 316
BpuEI CTTGAG 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 773
BsaJI CCNNGG 2 cut(s) 61, 362
Bsc4I CCNNNNNNNGG 2 cut(s) 506, 537
Bse118I RCCGGY 1 cut(s) 349
Bse1I ACTGG 2 cut(s) 264, 402
Bse3DI GCAATG 1 cut(s) 420
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 2 cut(s) 61, 362
BseLI CCNNNNNNNGG 2 cut(s) 506, 537
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 2 cut(s) 264, 402
BseRI GAGGAG 3 cut(s) 224, 526, 644
BseXI GCAGC 4 cut(s) 355, 358, 397, 470
BseYI CCCAGC 1 cut(s) 535
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 2 cut(s) 5, 547
BshNI GGYRCC 1 cut(s) 352
BsiEI CGRYCG 1 cut(s) 58
BsiSI CCGG 1 cut(s) 350
BslI CCNNNNNNNGG 2 cut(s) 506, 537
BsmAI GTCTC 1 cut(s) 773
BsnI GGCC 2 cut(s) 5, 547
Bso31I GGTCTC 1 cut(s) 773
Bsp143I GATC 3 cut(s) 36, 50, 81
BspACI CCGC 7 cut(s) 58, 155, 320, 335, 341, 389, 548
BspANI GGCC 2 cut(s) 5, 547
BspCNI CTCAG 1 cut(s) 267
BspLI GGNNCC 3 cut(s) 52, 83, 354
BspPI GGATC 5 cut(s) 31, 45, 58, 76, 89
BspT107I GGYRCC 1 cut(s) 352
BspTNI GGTCTC 1 cut(s) 773
BsrDI GCAATG 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 349
BsrI ACTGG 2 cut(s) 264, 402
BssAI RCCGGY 1 cut(s) 349
BssECI CCNNGG 2 cut(s) 61, 362
BssMI GATC 3 cut(s) 36, 50, 81
BssT1I CCWWGG 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 366
BstAPI GCANNNNNTGC 1 cut(s) 352
BstC8I GCNNGC 1 cut(s) 588
BstDEI CTNAG 2 cut(s) 275, 316
BstDSI CCRYGG 1 cut(s) 362
BstHHI GCGC 2 cut(s) 670, 706
BstKTI GATC 3 cut(s) 39, 53, 84
BstMAI GTCTC 1 cut(s) 773
BstMBI GATC 3 cut(s) 36, 50, 81
BstMCI CGRYCG 1 cut(s) 58
BstMWI GCNNNNNNNGC 7 cut(s) 278, 317, 329, 343, 352, 385, 464
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BstV1I GCAGC 4 cut(s) 355, 358, 397, 470
BstV2I GAAGAC 2 cut(s) 138, 533
BstX2I RGATCY 3 cut(s) 36, 50, 81
BstYI RGATCY 3 cut(s) 36, 50, 81
BsuRI GGCC 2 cut(s) 5, 547
BtgI CCRYGG 1 cut(s) 362
BtgZI GCGATG 1 cut(s) 222
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 4 cut(s) 271, 272, 396, 409
Cac8I GCNNGC 1 cut(s) 588
CfoI GCGC 2 cut(s) 670, 706
Cfr10I RCCGGY 1 cut(s) 349
Cfr13I GGNCC 1 cut(s) 178
Csp6I GTAC 2 cut(s) 194, 713
CviAII CATG 1 cut(s) 488
CviJI RGCY 8 cut(s) 5, 249, 281, 323, 349, 388, 547, 683
CviKI_1 RGCY 8 cut(s) 5, 249, 281, 323, 349, 388, 547, 683
CviQI GTAC 2 cut(s) 194, 713
DdeI CTNAG 2 cut(s) 275, 316
DpnI GATC 3 cut(s) 38, 52, 83
DpnII GATC 3 cut(s) 36, 50, 81
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 61
Eco31I GGTCTC 1 cut(s) 773
Eco47I GGWCC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 1 cut(s) 491
FaiI YATR 8 cut(s) 370, 489, 666, 694, 731, 755, 763, 784
FatI CATG 1 cut(s) 487
Fnu4HI GCNGC 7 cut(s) 321, 344, 347, 386, 389, 459, 548
Fsp4HI GCNGC 7 cut(s) 321, 344, 347, 386, 389, 459, 548
FspBI CTAG 1 cut(s) 62
FspI TGCGCA 1 cut(s) 669
GlaI GCGC 2 cut(s) 669, 705
GluI GCNGC 7 cut(s) 321, 344, 347, 386, 389, 459, 548
GsaI CCCAGC 1 cut(s) 539
GsuI CTGGAG 1 cut(s) 62
HaeIII GGCC 2 cut(s) 5, 547
HapII CCGG 1 cut(s) 350
HhaI GCGC 2 cut(s) 670, 706
Hin1II CATG 1 cut(s) 491
Hin6I GCGC 2 cut(s) 668, 704
HinP1I GCGC 2 cut(s) 668, 704
HinfI GANTC 5 cut(s) 224, 230, 287, 595, 641
HpaII CCGG 1 cut(s) 350
HphI GGTGA 1 cut(s) 144
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 6 cut(s) 55, 81, 169, 202, 229, 256
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 1 cut(s) 298
HpyAV CCTTC 6 cut(s) 21, 207, 208, 644, 673, 703
HpyCH4III ACNGT 1 cut(s) 366
HpyCH4V TGCA 3 cut(s) 332, 425, 782
HpyF10VI GCNNNNNNNGC 7 cut(s) 278, 317, 329, 343, 352, 385, 464
HpyF3I CTNAG 2 cut(s) 275, 316
Hsp92II CATG 1 cut(s) 491
HspAI GCGC 2 cut(s) 668, 704
Kzo9I GATC 3 cut(s) 36, 50, 81
Lsp1109I GCAGC 4 cut(s) 355, 358, 397, 470
LweI GCATC 1 cut(s) 709
MaeI CTAG 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 574
MalI GATC 3 cut(s) 38, 52, 83
MboI GATC 3 cut(s) 36, 50, 81
MboII GAAGA 7 cut(s) 46, 90, 93, 141, 143, 538, 768
MflI RGATCY 3 cut(s) 36, 50, 81
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 204, 750
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 2 cut(s) 59, 78
MnlI CCTC 6 cut(s) 24, 41, 202, 322, 504, 622
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 410
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 550
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 41
MwoI GCNNNNNNNGC 7 cut(s) 278, 317, 329, 343, 352, 385, 464
NdeII GATC 3 cut(s) 36, 50, 81
NlaIII CATG 1 cut(s) 491
NlaIV GGNNCC 3 cut(s) 52, 83, 354
NmuCI GTSAC 1 cut(s) 574
NsbI TGCGCA 1 cut(s) 669
PfeI GAWTC 4 cut(s) 230, 287, 595, 641
PfoI TCCNGGA 1 cut(s) 39
PkrI GCNGC 7 cut(s) 322, 345, 348, 387, 390, 460, 549
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 39
PspFI CCCAGC 1 cut(s) 535
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 3 cut(s) 52, 83, 354
PspPI GGNCC 1 cut(s) 178
PsuI RGATCY 3 cut(s) 36, 50, 81
RsaI GTAC 2 cut(s) 195, 714
RsaNI GTAC 2 cut(s) 194, 713
SaqAI TTAA 1 cut(s) 410
SatI GCNGC 7 cut(s) 321, 344, 347, 386, 389, 459, 548
Sau3AI GATC 3 cut(s) 36, 50, 81
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 41
SetI ASST 4 cut(s) 67, 199, 626, 714
SfaNI GCATC 1 cut(s) 709
SinI GGWCC 1 cut(s) 178
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 2 cut(s) 204, 750
SsiI CCGC 7 cut(s) 58, 155, 320, 335, 341, 389, 548
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 39
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 366
TaqI TCGA 1 cut(s) 644
TasI AATT 2 cut(s) 204, 750
TauI GCSGC 3 cut(s) 323, 391, 550
TfiI GAWTC 4 cut(s) 230, 287, 595, 641
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TscAI CASTG 4 cut(s) 271, 279, 403, 409
TseFI GTSAC 1 cut(s) 574
TseI GCWGC 4 cut(s) 343, 346, 385, 458
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 2 cut(s) 93, 476
TspRI CASTG 4 cut(s) 271, 279, 403, 409
VpaK11BI GGWCC 1 cut(s) 178
XmaJI CCTAGG 1 cut(s) 61
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.