Rorug06G0341600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0015876
Physical Location & Seq
Reverse (-)
49223626 .. 49224807
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0341600.1

Sequence Viewer

Length: 558 bp
ATGAAGAATCGAAACCCAAAATACGCTGCAATCAACAGAGAGAAATCCGACGGCTCGAAATCGGTGTACAATAAGAAGAAGAACCCGAGGAGATTTGGTGGGCAAGGCCGTTCTCTCGAGAATTCAACGAACAGCTACTACAACCCAGCCATCATAAAGAAAAAAAGGGAGTTCTACGATAATGCCAAGCACGTGAAGAAGTATAAGAAGTTGGTAAAGCAACAGCCGACCGATGTTCCATCAGCTATAATACCACTCGAGGAAGAAAATGAAACTGAAGATGGTTGCAAGATGAGTAAGAATAACAAGAAGAGAAAAGATAGAGAATCACGTAATTTAATAGAAATATATGAGAAGAAACATGAAGAGATAGAGAAGGCAAGAATGGAGAAGGAGGCTAAATTTCAGGCCAGAAAGGAAGAAAGAGAGAAGTCTGAAGCTCGGAGGAAGGCTATTAGGGAGAAGATGATGAAGAAAACGCATAAAGGTCAGCCTGTTATGAAGTACAGAATTCAACATCTTTTGGAGACTATTCAAGGCTCCATGAATAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

21.99

Weight (kDa)

10.02

Isoelectric Point (pI)

61.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
rRNA_processing PF08524 52 - 179 4.1e-13 rRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32680
fragaria_vesca FvH4_2g36330
malus_domestica MD15G1099900.v1.1
prunus_persica Prupe.1G454700_v2.0.a1
pyrus_communis pycom08g10100 pycom15g09190
rosa_chinensis RchiOBHm_Chr6g0305551
rosa_multiflora Rmu_sc0000841.1_g000003 Rmu_sc0001153.1_g000006
rosa_roxburghii Rroxscaffold_7G00162580
rosa_rugosa Rorug06G0341600
rosa_samantha Rh6AG453600 Rh6BG448000 Rh6CG467400
rosa_wichuraiana Rw6G039530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 121, 401, 510
AcuI CTGAAG 2 cut(s) 297, 456
AcvI CACGTG 1 cut(s) 193
AfaI GTAC 2 cut(s) 68, 506
AgsI TTSAA 3 cut(s) 126, 515, 536
AluBI AGCT 3 cut(s) 135, 245, 440
AluI AGCT 3 cut(s) 135, 245, 440
Alw26I GTCTC 1 cut(s) 521
Ama87I CYCGRG 3 cut(s) 85, 116, 257
AoxI GGCC 2 cut(s) 106, 408
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 3 cut(s) 121, 401, 510
AvaI CYCGRG 3 cut(s) 85, 116, 257
BbrPI CACGTG 1 cut(s) 193
BbvI GCAGC 1 cut(s) 13
BccI CCATC 3 cut(s) 158, 247, 275
BceAI ACGGC 2 cut(s) 67, 93
BcoDI GTCTC 1 cut(s) 521
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
BmeT110I CYCGRG 3 cut(s) 85, 116, 257
BmiI GGNNCC 1 cut(s) 541
BsaAI YACGTR 2 cut(s) 193, 332
BsaJI CCNNGG 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
BseDI CCNNGG 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 13
BseYI CCCAGC 1 cut(s) 145
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 2 cut(s) 108, 410
BsiEI CGRYCG 1 cut(s) 231
BsiHKCI CYCGRG 3 cut(s) 85, 116, 257
BsmAI GTCTC 1 cut(s) 521
BsnI GGCC 2 cut(s) 108, 410
BsoBI CYCGRG 3 cut(s) 85, 116, 257
Bsp1407I TGTACA 1 cut(s) 66
BspANI GGCC 2 cut(s) 108, 410
BspLI GGNNCC 1 cut(s) 541
BsrGI TGTACA 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 86
Bst6I CTCTTC 2 cut(s) 305, 360
BstAUI TGTACA 1 cut(s) 66
BstBAI YACGTR 2 cut(s) 193, 332
BstMAI GTCTC 1 cut(s) 521
BstMCI CGRYCG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 13
BsuRI GGCC 2 cut(s) 108, 410
Csp6I GTAC 2 cut(s) 67, 505
CviAII CATG 2 cut(s) 362, 544
CviQI GTAC 2 cut(s) 67, 505
Eam1104I CTCTTC 2 cut(s) 305, 360
EarI CTCTTC 2 cut(s) 305, 360
Eco57I CTGAAG 2 cut(s) 297, 456
Eco72I CACGTG 1 cut(s) 193
Eco88I CYCGRG 3 cut(s) 85, 116, 257
EcoRI GAATTC 2 cut(s) 121, 510
FaeI CATG 2 cut(s) 365, 547
FatI CATG 2 cut(s) 361, 543
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
GsaI CCCAGC 1 cut(s) 149
HaeIII GGCC 2 cut(s) 108, 410
Hin1II CATG 2 cut(s) 365, 547
HinfI GANTC 2 cut(s) 7, 326
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 3 cut(s) 49, 436, 444
Hpy188III TCNNGA 2 cut(s) 116, 118
Hpy8I GTNNAC 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 3 cut(s) 370, 385, 442
HpyCH4IV ACGT 2 cut(s) 192, 331
HpyCH4V TGCA 2 cut(s) 29, 288
HpySE526I ACGT 2 cut(s) 192, 331
Hsp92II CATG 2 cut(s) 365, 547
LmnI GCTCC 1 cut(s) 545
LpnPI CCDG 4 cut(s) 159, 392, 424, 507
Lsp1109I GCAGC 1 cut(s) 13
MaeII ACGT 2 cut(s) 192, 331
MluCI AATT 4 cut(s) 121, 334, 401, 510
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 4 cut(s) 81, 253, 388, 438
MseI TTAA 1 cut(s) 338
NlaIII CATG 2 cut(s) 365, 547
NlaIV GGNNCC 1 cut(s) 541
PaeR7I CTCGAG 2 cut(s) 116, 257
PfeI GAWTC 2 cut(s) 7, 326
PkrI GCNGC 1 cut(s) 28
PmaCI CACGTG 1 cut(s) 193
PmlI CACGTG 1 cut(s) 193
Ppu21I YACGTR 2 cut(s) 193, 332
PspCI CACGTG 1 cut(s) 193
PspFI CCCAGC 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 541
PspXI VCTCGAGB 1 cut(s) 257
PsrI GAACNNNNNNTAC 2 cut(s) 122, 154
RsaI GTAC 2 cut(s) 68, 506
RsaNI GTAC 2 cut(s) 67, 505
SaqAI TTAA 1 cut(s) 338
SatI GCNGC 1 cut(s) 27
SetI ASST 6 cut(s) 137, 195, 247, 334, 442, 490
Sfr274I CTCGAG 2 cut(s) 116, 257
SlaI CTCGAG 2 cut(s) 116, 257
SmlI CTYRAG 2 cut(s) 116, 257
SmoI CTYRAG 2 cut(s) 116, 257
Sse9I AATT 4 cut(s) 121, 334, 401, 510
TaiI ACGT 2 cut(s) 195, 334
TaqI TCGA 4 cut(s) 10, 56, 117, 258
TaqII GACCGA 1 cut(s) 245
TasI AATT 4 cut(s) 121, 334, 401, 510
TatI WGTACW 2 cut(s) 66, 504
TfiI GAWTC 2 cut(s) 7, 326
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 5 cut(s) 17, 285, 378, 485, 515
XapI RAATTY 3 cut(s) 121, 401, 510
XhoI CTCGAG 2 cut(s) 116, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.