RchiOBHm_Chr6g0305551

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0015876
Physical Location & Seq
Forward (+)
64520496 .. 64521691
1196 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27460

Sequence Viewer

Length: 759 bp
ATGGCCACAAACAGCAGAGAAGCCCGAAGGAGGAGGATCCTGGAGAGAGGGTCCGACCGCCTAGCTCTAATCACGGGTCGGATCCAAACACTACCATCTTCCTCTTCATCACCCGACCCACAAACCCAGTTTGAAGATACAACAACAAACCCATCTTCTCCGCCGCCAACTTCCGATGTTCAGGACCAAATCGCCGAGTTGCCTTCTGAGATTGAAGAAAACGAGTCTGATTCAACATTGCCAAGAAGCCAATCTGATACAAACACTGAAGCCTTGAGGGCCATTGATACCCAAGTCCAGCAACTCCTCTCCTCATTAACAGCTCAAAATGCACCACCACCACCGTCTCAAAATCAAAGGCGGCCGCTTTTTACTGCCAGTGGAGTGAGTAGTGCCATTGCAGAAACAGAAAGAACCCGCCTTTTGTTTTCGGTAGCAGTAGCAATGTTGGTGGTTTTAGTTCATCTGGGTTTTCCTTTGATGGGGACTAGTAACATAGTGAAGACCCTGTTGGGTTTTCGGCCGTTGTACTTGGTTTTGCTGACCAATGTGACATTTGTGCTGGCAAGGATTCTTGGTAAGCAGAGAGCCTCTGAAAGGCCTGGAGAGATTAGAACTTCGGCAGAAGGAATTGAGTGGGTTGCGCAGTTAGGGAGGGCTGTAGAGATAGGCTTGGTAGCGCAGAAGGTACTTGATGCTCTGTTTATGGATTGTGCTGTGTATGCAATAATAGTTGTATGTGGTCTCTCTTCTGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

27.3

Weight (kDa)

5.36

Isoelectric Point (pI)

57.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32680
fragaria_vesca FvH4_2g36330
malus_domestica MD15G1099900.v1.1
prunus_persica Prupe.1G454700_v2.0.a1
pyrus_communis pycom08g10100 pycom15g09190
rosa_chinensis RchiOBHm_Chr6g0305551
rosa_multiflora Rmu_sc0000841.1_g000003 Rmu_sc0001153.1_g000006
rosa_roxburghii Rroxscaffold_7G00162580
rosa_rugosa Rorug06G0341600
rosa_samantha Rh6AG453600 Rh6BG448000 Rh6CG467400
rosa_wichuraiana Rw6G039530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 645
AciI CCGC 6 cut(s) 58, 161, 164, 361, 365, 418
AclWI GGATC 4 cut(s) 31, 44, 76, 89
AcoI YGGCCR 3 cut(s) 3, 362, 521
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 2 cut(s) 530, 690
AfiI CCNNNNNNNGG 3 cut(s) 30, 482, 597
AgsI TTSAA 3 cut(s) 134, 215, 234
AhlI ACTAGT 1 cut(s) 488
AjnI CCWGG 2 cut(s) 39, 601
AjuI GAANNNNNNNTTGG 2 cut(s) 494, 526
AluBI AGCT 2 cut(s) 65, 323
AluI AGCT 2 cut(s) 65, 323
Alw26I GTCTC 2 cut(s) 351, 749
AlwI GGATC 4 cut(s) 31, 44, 76, 89
AoxI GGCC 5 cut(s) 3, 279, 362, 521, 599
AspLEI GCGC 2 cut(s) 646, 682
AspS9I GGNCC 3 cut(s) 51, 184, 279
AsuHPI GGTGA 1 cut(s) 102
AvaII GGWCC 2 cut(s) 51, 184
BaeI ACNNNNGTAYC 2 cut(s) 279, 312
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 2 cut(s) 36, 81
BbsI GAAGAC 1 cut(s) 509
BccI CCATC 3 cut(s) 103, 160, 475
BceAI ACGGC 1 cut(s) 508
BciT130I CCWGG 2 cut(s) 41, 603
BcoDI GTCTC 2 cut(s) 351, 749
BcuI ACTAGT 1 cut(s) 488
BfaI CTAG 2 cut(s) 62, 489
BfmI CTRYAG 1 cut(s) 660
BglI GCCNNNNNGGC 1 cut(s) 278
BisI GCNGC 3 cut(s) 164, 362, 365
BlsI GCNGC 3 cut(s) 165, 363, 366
Bme1390I CCNGG 2 cut(s) 41, 603
Bme18I GGWCC 2 cut(s) 51, 184
BmgT120I GGNCC 3 cut(s) 51, 184, 279
BmiI GGNNCC 3 cut(s) 38, 52, 83
BmrFI CCNGG 2 cut(s) 41, 603
BmrI ACTGGG 1 cut(s) 121
BmsI GCATC 1 cut(s) 685
BmuI ACTGGG 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 509
BpmI CTGGAG 2 cut(s) 62, 624
BpuEI CTTGAG 1 cut(s) 295
BsaI GGTCTC 1 cut(s) 749
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 482, 597
Bse1I ACTGG 2 cut(s) 127, 378
Bse3DI GCAATG 3 cut(s) 236, 396, 450
BseBI CCWGG 2 cut(s) 41, 603
BseLI CCNNNNNNNGG 3 cut(s) 30, 482, 597
BseMI GCAATG 3 cut(s) 236, 396, 450
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 2 cut(s) 127, 378
BseRI GAGGAG 3 cut(s) 46, 296, 301
BseX3I CGGCCG 2 cut(s) 362, 521
Bsh1285I CGRYCG 3 cut(s) 58, 365, 524
BshFI GGCC 5 cut(s) 5, 281, 364, 523, 601
BsiEI CGRYCG 3 cut(s) 58, 365, 524
BslFI GGGAC 1 cut(s) 499
BslI CCNNNNNNNGG 3 cut(s) 30, 482, 597
BsmAI GTCTC 2 cut(s) 351, 749
BsmBI CGTCTC 1 cut(s) 351
BsmFI GGGAC 1 cut(s) 499
BsnI GGCC 5 cut(s) 5, 281, 364, 523, 601
Bso31I GGTCTC 1 cut(s) 749
Bsp143I GATC 2 cut(s) 36, 81
BspACI CCGC 6 cut(s) 58, 161, 164, 361, 365, 418
BspANI GGCC 5 cut(s) 5, 281, 364, 523, 601
BspCNI CTCAG 1 cut(s) 199
BspLI GGNNCC 3 cut(s) 38, 52, 83
BspPI GGATC 4 cut(s) 31, 44, 76, 89
BspTNI GGTCTC 1 cut(s) 749
BsrDI GCAATG 3 cut(s) 236, 396, 450
BsrI ACTGG 2 cut(s) 127, 378
BssMI GATC 2 cut(s) 36, 81
Bst2UI CCWGG 2 cut(s) 41, 603
Bst4CI ACNGT 1 cut(s) 345
Bst6I CTCTTC 2 cut(s) 109, 754
BstC8I GCNNGC 1 cut(s) 564
BstDEI CTNAG 1 cut(s) 207
BstENI CCTNNNNNAGG 1 cut(s) 595
BstHHI GCGC 2 cut(s) 646, 682
BstKTI GATC 2 cut(s) 39, 84
BstMAI GTCTC 2 cut(s) 351, 749
BstMBI GATC 2 cut(s) 36, 81
BstMCI CGRYCG 3 cut(s) 58, 365, 524
BstMWI GCNNNNNNNGC 3 cut(s) 278, 329, 722
BstNI CCWGG 2 cut(s) 41, 603
BstSCI CCNGG 2 cut(s) 39, 601
BstSFI CTRYAG 1 cut(s) 660
BstV2I GAAGAC 1 cut(s) 509
BstX2I RGATCY 2 cut(s) 36, 81
BstYI RGATCY 2 cut(s) 36, 81
BstZI CGGCCG 2 cut(s) 362, 521
BsuRI GGCC 5 cut(s) 5, 281, 364, 523, 601
BtsIMutI CAGTG 2 cut(s) 264, 385
Cac8I GCNNGC 1 cut(s) 564
CciNI GCGGCCGC 1 cut(s) 362
CfoI GCGC 2 cut(s) 646, 682
Cfr13I GGNCC 3 cut(s) 51, 184, 279
Csp6I GTAC 2 cut(s) 529, 689
CspCI CAANNNNNGTGG 2 cut(s) 432, 467
CviQI GTAC 2 cut(s) 529, 689
DdeI CTNAG 1 cut(s) 207
DpnI GATC 2 cut(s) 38, 83
DpnII GATC 2 cut(s) 36, 81
EaeI YGGCCR 3 cut(s) 3, 362, 521
EagI CGGCCG 2 cut(s) 362, 521
Eam1104I CTCTTC 2 cut(s) 109, 754
EarI CTCTTC 2 cut(s) 109, 754
EciI GGCGGA 1 cut(s) 150
EclXI CGGCCG 2 cut(s) 362, 521
Eco147I AGGCCT 1 cut(s) 601
Eco31I GGTCTC 1 cut(s) 749
Eco47I GGWCC 2 cut(s) 51, 184
Eco52I CGGCCG 2 cut(s) 362, 521
Eco57I CTGAAG 1 cut(s) 288
EcoNI CCTNNNNNAGG 1 cut(s) 595
EcoRII CCWGG 2 cut(s) 39, 601
Esp3I CGTCTC 1 cut(s) 351
FaiI YATR 4 cut(s) 497, 707, 723, 739
FaqI GGGAC 1 cut(s) 499
FauI CCCGC 1 cut(s) 425
Fnu4HI GCNGC 3 cut(s) 164, 362, 365
Fsp4HI GCNGC 3 cut(s) 164, 362, 365
FspBI CTAG 2 cut(s) 62, 489
FspI TGCGCA 1 cut(s) 645
GlaI GCGC 2 cut(s) 645, 681
GluI GCNGC 3 cut(s) 164, 362, 365
GsuI CTGGAG 2 cut(s) 62, 624
HaeIII GGCC 5 cut(s) 5, 281, 364, 523, 601
HhaI GCGC 2 cut(s) 646, 682
Hin6I GCGC 2 cut(s) 644, 680
HinP1I GCGC 2 cut(s) 644, 680
HinfI GANTC 3 cut(s) 224, 230, 571
HphI GGTGA 1 cut(s) 102
Hpy188I TCNGA 7 cut(s) 55, 81, 175, 208, 229, 256, 595
Hpy188III TCNNGA 1 cut(s) 182
HpyAV CCTTC 4 cut(s) 21, 213, 620, 679
HpyCH4III ACNGT 1 cut(s) 345
HpyCH4V TGCA 3 cut(s) 332, 401, 725
HpyF10VI GCNNNNNNNGC 3 cut(s) 278, 329, 722
HpyF3I CTNAG 1 cut(s) 207
HspAI GCGC 2 cut(s) 644, 680
Kzo9I GATC 2 cut(s) 36, 81
LweI GCATC 1 cut(s) 685
MaeI CTAG 2 cut(s) 62, 489
MaeIII GTNAC 2 cut(s) 491, 550
MalI GATC 2 cut(s) 38, 83
MboI GATC 2 cut(s) 36, 81
MboII GAAGA 7 cut(s) 90, 96, 146, 147, 227, 514, 741
MflI RGATCY 2 cut(s) 36, 81
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 630
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 2 cut(s) 59, 78
MnlI CCTC 9 cut(s) 24, 27, 41, 112, 270, 317, 322, 601, 648
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 317
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 2 cut(s) 41, 603
MvaI CCWGG 2 cut(s) 41, 603
MwoI GCNNNNNNNGC 3 cut(s) 278, 329, 722
NdeII GATC 2 cut(s) 36, 81
NlaIV GGNNCC 3 cut(s) 38, 52, 83
NmeAIII GCCGAG 1 cut(s) 220
NmuCI GTSAC 1 cut(s) 550
NotI GCGGCCGC 1 cut(s) 362
NsbI TGCGCA 1 cut(s) 645
PceI AGGCCT 1 cut(s) 601
PfeI GAWTC 2 cut(s) 230, 571
PfoI TCCNGGA 1 cut(s) 39
PkrI GCNGC 3 cut(s) 165, 363, 366
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp6I CCWGG 2 cut(s) 39, 601
PspGI CCWGG 2 cut(s) 39, 601
PspN4I GGNNCC 3 cut(s) 38, 52, 83
PspPI GGNCC 3 cut(s) 51, 184, 279
PsuI RGATCY 2 cut(s) 36, 81
RsaI GTAC 2 cut(s) 530, 690
RsaNI GTAC 2 cut(s) 529, 689
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 3 cut(s) 164, 362, 365
Sau3AI GATC 2 cut(s) 36, 81
Sau96I GGNCC 3 cut(s) 51, 184, 279
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 2 cut(s) 41, 603
SetI ASST 3 cut(s) 67, 325, 690
SfaNI GCATC 1 cut(s) 685
SfcI CTRYAG 1 cut(s) 660
SinI GGWCC 2 cut(s) 51, 184
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
SpeI ACTAGT 1 cut(s) 488
Sse9I AATT 1 cut(s) 630
SseBI AGGCCT 1 cut(s) 601
SsiI CCGC 6 cut(s) 58, 161, 164, 361, 365, 418
SspMI CTAG 2 cut(s) 62, 489
StuI AGGCCT 1 cut(s) 601
StyD4I CCNGG 2 cut(s) 39, 601
TaaI ACNGT 1 cut(s) 345
TasI AATT 1 cut(s) 630
TatI WGTACW 1 cut(s) 528
TauI GCSGC 3 cut(s) 166, 364, 367
TfiI GAWTC 2 cut(s) 230, 571
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 2 cut(s) 271, 385
TseFI GTSAC 1 cut(s) 550
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 2 cut(s) 96, 452
TspRI CASTG 2 cut(s) 271, 385
VpaK11BI GGWCC 2 cut(s) 51, 184
XagI CCTNNNNNAGG 1 cut(s) 595
XspI CTAG 2 cut(s) 62, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.